Wall clock time and date at job start Mon Mar 30 2020 07:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99864 * 2 1 4 4 H 1.48497 * 109.47387 * 239.99723 * 3 2 1 5 5 H 1.48507 * 109.47091 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47185 * 119.99467 * 3 2 1 7 7 C 1.37876 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00027 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99991 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.50923 * 59.93763 * 9 7 2 11 11 C 1.53054 * 109.48754 * 299.88862 * 9 7 2 12 12 N 1.46955 * 109.36537 * 181.63475 * 11 9 7 13 13 C 1.46955 * 110.88145 * 59.31595 * 12 11 9 14 14 C 1.53044 * 109.36708 * 300.68281 * 13 12 11 15 15 N 1.46955 * 109.48780 * 180.02562 * 9 7 2 16 16 C 1.39741 * 110.99709 * 303.15005 * 15 9 7 17 17 C 1.38900 * 120.06282 * 292.24923 * 16 15 9 18 18 C 1.38115 * 119.93465 * 179.97438 * 17 16 15 19 19 C 1.38380 * 120.06408 * 359.97438 * 18 17 16 20 20 Cl 1.73594 * 119.93786 * 180.02562 * 19 18 17 21 21 C 1.38377 * 120.12272 * 0.04448 * 19 18 17 22 22 C 1.38108 * 120.06591 * 359.97438 * 21 19 18 23 23 H 0.96996 * 120.00424 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.49134 * 61.66544 * 11 9 7 25 25 H 1.09006 * 109.50663 * 301.60992 * 11 9 7 26 26 H 1.00901 * 110.99625 * 295.45390 * 12 11 9 27 27 H 1.08999 * 109.48921 * 180.71088 * 13 12 11 28 28 H 1.09003 * 109.48813 * 60.65151 * 13 12 11 29 29 H 1.08999 * 109.49153 * 298.43377 * 14 13 12 30 30 H 1.09001 * 109.50790 * 178.37639 * 14 13 12 31 31 H 1.07994 * 120.03165 * 0.25643 * 17 16 15 32 32 H 1.08000 * 119.96157 * 180.02562 * 18 17 16 33 33 H 1.07997 * 119.97046 * 179.97438 * 21 19 18 34 34 H 1.07998 * 120.03653 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6237 -2.5573 -0.8889 11 6 0.3727 -2.5816 1.2512 12 7 -0.3309 -3.8717 1.2683 13 6 0.6238 -4.9889 1.2688 14 6 1.5022 -4.9065 0.0183 15 7 2.2058 -3.6164 0.0018 16 6 3.0743 -3.5341 -1.0899 17 6 2.5908 -3.7176 -2.3790 18 6 3.4515 -3.6352 -3.4561 19 6 4.7941 -3.3695 -3.2519 20 17 5.8728 -3.2660 -4.6080 21 6 5.2785 -3.1867 -1.9686 22 6 4.4226 -3.2684 -0.8878 23 1 -0.4850 0.8400 0.0004 24 1 -0.3554 -1.7705 1.2383 25 1 0.9969 -2.4959 2.1407 26 1 -0.9719 -3.9442 0.4925 27 1 0.0788 -5.9329 1.2689 28 1 1.2511 -4.9308 2.1584 29 1 0.8778 -4.9920 -0.8710 30 1 2.2302 -5.7176 0.0308 31 1 1.5422 -3.9200 -2.5393 32 1 3.0760 -3.7774 -4.4587 33 1 6.3268 -2.9799 -1.8120 34 1 4.8012 -3.1260 0.1136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211577487.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:59 Heat of formation + Delta-G solvation = 15.396326 kcal Electronic energy + Delta-G solvation = -18354.140957 eV Core-core repulsion = 15504.866550 eV Total energy + Delta-G solvation = -2849.274407 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.16394 -39.09463 -37.35726 -35.11006 -34.89457 -32.02945 -31.45302 -30.12526 -27.43125 -25.55201 -23.85271 -23.59004 -22.59415 -20.98537 -18.76012 -18.13689 -17.37014 -16.60025 -16.51748 -15.80301 -15.64864 -15.31237 -15.28085 -14.76933 -14.40309 -14.25642 -13.85403 -13.83495 -13.00671 -12.87180 -12.70167 -12.56206 -12.52146 -12.23098 -12.10181 -12.05705 -11.79786 -11.71062 -11.27722 -10.61409 -9.96440 -9.45964 -9.28637 -9.07127 -8.16179 -6.24625 0.21483 0.37809 1.16487 1.40838 1.41160 1.48439 2.38933 2.67521 3.06566 3.13972 3.62332 3.87020 3.95514 4.19677 4.29870 4.37894 4.48035 4.50671 4.59251 4.69202 4.82659 4.92486 5.01184 5.08987 5.12298 5.20982 5.27036 5.52994 5.65721 5.72300 5.75096 6.03132 6.18985 6.46988 6.59457 6.64252 6.89347 7.42595 8.89601 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.008032 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.668290 B = 3485.103863 C = 4858.000245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.020 3.980 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.206 3.794 10 H -0.029 1.029 11 C 0.079 3.921 12 N -0.695 5.695 13 C 0.065 3.935 14 C 0.022 3.978 15 N -0.512 5.512 16 C 0.125 3.875 17 C -0.151 4.151 18 C -0.102 4.102 19 C -0.055 4.055 20 Cl -0.070 7.070 21 C -0.102 4.102 22 C -0.098 4.098 23 H 0.263 0.737 24 H 0.080 0.920 25 H 0.042 0.958 26 H 0.333 0.667 27 H 0.102 0.898 28 H 0.071 0.929 29 H 0.026 0.974 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.144 0.856 33 H 0.154 0.846 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.740 -8.977 -4.357 12.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.179 4.179 3 Si 0.776 3.224 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.556 4.556 8 H 0.076 0.924 9 C 0.099 3.901 10 H -0.012 1.012 11 C -0.051 4.051 12 N -0.322 5.322 13 C -0.065 4.065 14 C -0.106 4.106 15 N -0.234 5.234 16 C 0.031 3.969 17 C -0.171 4.171 18 C -0.121 4.121 19 C -0.081 4.081 20 Cl -0.041 7.041 21 C -0.121 4.121 22 C -0.117 4.117 23 H 0.072 0.928 24 H 0.098 0.902 25 H 0.061 0.939 26 H 0.149 0.851 27 H 0.120 0.880 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.105 0.895 31 H 0.133 0.867 32 H 0.162 0.838 33 H 0.171 0.829 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.837 -8.818 -3.306 11.637 hybrid contribution 0.050 1.166 -1.817 2.159 sum 6.886 -7.652 -5.123 11.499 Atomic orbital electron populations 1.69942 1.06843 1.27490 1.51153 1.25563 0.95624 1.01962 0.94778 0.85721 0.78493 0.79458 0.78697 1.20293 1.20881 1.19499 1.21259 0.93284 0.90649 1.50428 0.92447 1.19704 0.89157 0.87827 0.93406 1.01202 1.21965 0.96390 0.90347 0.96379 1.60871 1.19257 1.03008 1.49074 1.22133 0.93298 0.94772 0.96298 1.22939 0.97649 0.91239 0.98807 1.59981 1.20467 1.03402 1.39543 1.19032 0.93341 0.95404 0.89145 1.21582 0.99556 1.02701 0.93274 1.20985 0.91446 0.99926 0.99732 1.20879 0.91341 1.07046 0.88866 1.98332 1.64320 1.96904 1.44545 1.21142 1.01187 0.99779 0.89977 1.21104 0.91876 0.99269 0.99484 0.92766 0.90158 0.93915 0.85053 0.87990 0.91068 0.95585 0.89541 0.86728 0.83846 0.82875 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.81 11.35 21.45 0.24 -50.57 16 2 C 0.02 1.09 5.30 84.65 0.45 1.54 16 3 Si 0.95 43.23 29.54 68.60 2.03 45.25 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.52 -27.47 8.05 25.60 0.21 -27.27 16 8 H 0.06 3.07 6.59 -2.91 -0.02 3.05 16 9 C 0.21 9.89 1.75 44.18 0.08 9.96 16 10 H -0.03 -1.59 7.67 -2.39 -0.02 -1.61 16 11 C 0.08 3.69 5.76 86.31 0.50 4.19 16 12 N -0.69 -26.34 6.91 -513.44 -3.55 -29.89 16 13 C 0.06 2.04 6.72 86.31 0.58 2.62 16 14 C 0.02 0.73 5.25 86.31 0.45 1.19 16 15 N -0.51 -20.75 4.50 -675.04 -3.04 -23.79 16 16 C 0.13 4.79 3.69 38.20 0.14 4.93 16 17 C -0.15 -5.42 8.68 22.40 0.19 -5.23 16 18 C -0.10 -3.18 9.82 22.27 0.22 -2.96 16 19 C -0.05 -1.63 6.32 22.34 0.14 -1.49 16 20 Cl -0.07 -1.77 28.95 -2.72 -0.08 -1.85 16 21 C -0.10 -3.05 9.82 22.27 0.22 -2.83 16 22 C -0.10 -3.40 9.11 22.40 0.20 -3.20 16 23 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 24 H 0.08 4.23 6.13 -2.39 -0.01 4.22 16 25 H 0.04 2.08 8.14 -2.38 -0.02 2.06 16 26 H 0.33 12.21 8.89 -89.69 -0.80 11.42 16 27 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.03 0.87 7.05 -2.39 -0.02 0.85 16 30 H 0.09 2.51 8.13 -2.39 -0.02 2.49 16 31 H 0.11 4.16 7.06 -2.91 -0.02 4.14 16 32 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 33 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 34 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -57.07 291.27 -0.70 -57.77 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.32 Total: 21.61 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: 3.38 Total: -18.53 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -6.35 Total: -104.25 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.08 Total: -1.85 kcal Total: -57.07 -0.70 -57.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211577487.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.168 kcal (2) G-P(sol) polarization free energy of solvation -57.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds