Wall clock time and date at job start Mon Mar 30 2020 07:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38823 * 119.73017 * 2 1 4 4 C 1.38382 * 120.57830 * 180.02562 * 3 2 1 5 5 Cl 1.73595 * 119.98450 * 179.97438 * 4 3 2 6 6 C 1.38558 * 120.02873 * 359.73580 * 4 3 2 7 7 O 1.35677 * 120.27067 * 180.28181 * 6 4 3 8 8 C 1.42902 * 116.99993 * 270.25874 * 7 6 4 9 9 C 1.52999 * 109.47282 * 179.97438 * 8 7 6 10 10 C 1.52994 * 117.49898 * 243.61963 * 9 8 7 11 11 C 1.52988 * 59.99942 * 252.50978 * 10 9 8 12 12 C 1.41273 * 119.46295 * 0.53651 * 6 4 3 13 13 C 1.41163 * 120.28613 * 179.74528 * 12 6 4 14 14 H 1.07996 * 119.99982 * 28.49741 * 13 12 6 15 15 C 1.39930 * 119.99932 * 208.49441 * 13 12 6 16 16 N 1.30865 * 119.99787 * 197.68262 * 15 13 12 17 17 Si 1.86805 * 120.00279 * 17.68015 * 15 13 12 18 18 H 1.48500 * 109.47080 * 270.00330 * 17 15 13 19 19 H 1.48496 * 109.46593 * 30.00044 * 17 15 13 20 20 H 1.48496 * 109.47135 * 149.99963 * 17 15 13 21 21 C 1.36478 * 119.72041 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.47568 * 269.98413 * 1 2 3 23 23 H 1.09009 * 109.46961 * 29.97852 * 1 2 3 24 24 H 1.08998 * 109.47547 * 149.97498 * 1 2 3 25 25 H 1.07993 * 119.70699 * 359.97438 * 3 2 1 26 26 H 1.09008 * 109.46858 * 300.00051 * 8 7 6 27 27 H 1.09004 * 109.47052 * 59.99553 * 8 7 6 28 28 H 1.08999 * 115.54590 * 29.32401 * 9 8 7 29 29 H 1.09003 * 117.49758 * 0.02562 * 10 9 8 30 30 H 1.09000 * 117.49521 * 145.01468 * 10 9 8 31 31 H 1.09005 * 117.50358 * 252.50887 * 11 10 9 32 32 H 1.09000 * 117.50187 * 107.49112 * 11 10 9 33 33 H 0.97000 * 120.00231 * 355.44410 * 16 15 13 34 34 H 1.07995 * 120.03005 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2055 0.0000 4 6 3.5791 1.2260 -0.0005 5 17 4.4243 2.7423 -0.0012 6 6 4.2902 0.0368 0.0045 7 8 5.6469 0.0512 0.0097 8 6 6.3005 0.0614 -1.2610 9 6 7.8164 0.0776 -1.0547 10 6 8.5842 1.3031 -1.5540 11 6 8.6999 -0.0280 -2.2992 12 6 3.5911 -1.1909 -0.0014 13 6 4.2981 -2.4127 -0.0019 14 1 5.2783 -2.4696 0.4480 15 6 3.7289 -3.5501 -0.5852 16 7 4.1975 -4.7375 -0.2967 17 14 2.3001 -3.3738 -1.7757 18 1 1.0205 -3.4234 -1.0239 19 1 2.4063 -2.0747 -2.4872 20 1 2.3380 -4.4831 -2.7622 21 6 2.1836 -1.1853 -0.0005 22 1 -0.3634 -0.0003 1.0276 23 1 -0.3633 0.8903 -0.5135 24 1 -0.3634 -0.8897 -0.5142 25 1 1.6463 2.1354 -0.0004 26 1 6.0191 -0.8302 -1.8215 27 1 6.0002 0.9497 -1.8169 28 1 8.1718 -0.4024 -0.1429 29 1 8.0094 2.0980 -2.0291 30 1 9.4450 1.6297 -0.9705 31 1 9.6368 -0.5772 -2.2063 32 1 8.2012 -0.1091 -3.2651 33 1 4.9805 -4.8256 0.2690 34 1 1.6396 -2.1182 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216967930.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:35 Heat of formation + Delta-G solvation = -20.088914 kcal Electronic energy + Delta-G solvation = -17990.760755 eV Core-core repulsion = 15107.654841 eV Total energy + Delta-G solvation = -2883.105914 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -38.92750 -37.40236 -35.87922 -35.68299 -33.96893 -31.15489 -30.16126 -27.13320 -25.53786 -24.58015 -22.21543 -21.68520 -20.31298 -19.86550 -18.25294 -17.00555 -15.72297 -15.44178 -14.73286 -14.32507 -14.20498 -13.54568 -13.46361 -13.13777 -12.86091 -12.63924 -12.52603 -11.81234 -11.71741 -11.40774 -11.30224 -11.14037 -10.80305 -10.68646 -10.33650 -10.29662 -10.15799 -9.94456 -9.83716 -9.53640 -9.25767 -8.70351 -7.86854 -7.52318 -7.36202 -4.69038 2.17776 2.38861 3.01889 3.07788 3.23530 3.41510 3.88051 3.95455 4.20577 4.53065 5.05593 5.14505 5.16106 5.47027 5.68350 5.71655 5.76057 5.79500 6.02810 6.08985 6.10172 6.16486 6.24754 6.27237 6.31651 6.38452 6.49113 6.67578 6.84224 7.11025 7.37349 7.42361 7.54754 7.64840 8.04992 8.28179 8.52095 8.77367 9.84267 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.009444 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.429281 B = 2964.280010 C = 4524.605925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.037 4.037 3 C -0.236 4.236 4 C 0.009 3.991 5 Cl -0.106 7.106 6 C -0.021 4.021 7 O -0.310 6.310 8 C 0.095 3.905 9 C -0.140 4.140 10 C -0.180 4.180 11 C -0.177 4.177 12 C 0.093 3.907 13 C -0.486 4.486 14 H 0.087 0.913 15 C 0.041 3.959 16 N -0.803 5.803 17 Si 1.069 2.931 18 H -0.273 1.273 19 H -0.262 1.262 20 H -0.287 1.287 21 C -0.234 4.234 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.108 0.892 26 H 0.054 0.946 27 H 0.041 0.959 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.290 0.710 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.571 6.956 -3.243 7.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.037 4.037 3 C -0.256 4.256 4 C -0.018 4.018 5 Cl -0.077 7.077 6 C -0.066 4.066 7 O -0.227 6.227 8 C 0.020 3.980 9 C -0.159 4.159 10 C -0.217 4.217 11 C -0.214 4.214 12 C 0.089 3.911 13 C -0.514 4.514 14 H 0.105 0.895 15 C -0.180 4.180 16 N -0.424 5.424 17 Si 0.895 3.105 18 H -0.200 1.200 19 H -0.186 1.186 20 H -0.214 1.214 21 C -0.253 4.253 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.126 0.874 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.128 0.872 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.209 6.121 -3.958 7.292 hybrid contribution 1.248 0.943 0.908 1.808 sum 1.038 7.064 -3.050 7.764 Atomic orbital electron populations 1.20750 0.92606 1.01705 1.01560 1.19097 0.94560 0.92690 0.97364 1.19989 0.90887 0.97001 1.17715 1.21148 0.92359 0.84157 1.04138 1.98271 1.79045 1.33255 1.97127 1.18243 0.82488 0.90224 1.15668 1.85974 1.15700 1.94000 1.26989 1.22051 0.89247 0.99824 0.86852 1.22107 0.92955 1.02052 0.98751 1.23018 1.02894 0.91709 1.04080 1.22928 1.01392 1.00709 0.96396 1.17866 0.91455 0.92272 0.89528 1.20615 1.05073 0.93390 1.32273 0.89542 1.27361 1.02108 0.91219 0.97320 1.70536 1.19264 1.24733 1.27878 0.83646 0.74230 0.76897 0.75733 1.19969 1.18633 1.21415 1.20776 0.93909 0.96804 1.13794 0.91787 0.92273 0.92201 0.87408 0.92742 0.94070 0.87184 0.88926 0.89076 0.88782 0.88858 0.89882 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 9.99 36.00 0.36 -1.41 16 2 C -0.04 -0.76 5.84 -105.04 -0.61 -1.37 16 3 C -0.24 -4.89 9.47 -39.31 -0.37 -5.27 16 4 C 0.01 0.19 6.33 -39.41 -0.25 -0.06 16 5 Cl -0.11 -2.04 28.50 -51.86 -1.48 -3.51 16 6 C -0.02 -0.50 5.75 -38.31 -0.22 -0.72 16 7 O -0.31 -7.19 8.86 -18.73 -0.17 -7.35 16 8 C 0.10 1.89 6.34 37.16 0.24 2.13 16 9 C -0.14 -2.34 6.06 -90.63 -0.55 -2.89 16 10 C -0.18 -2.48 10.18 -26.74 -0.27 -2.75 16 11 C -0.18 -2.40 10.25 -26.74 -0.27 -2.67 16 12 C 0.09 2.33 5.15 -106.68 -0.55 1.78 16 13 C -0.49 -12.69 9.07 -37.84 -0.34 -13.03 16 14 H 0.09 2.40 7.88 -52.49 -0.41 1.99 16 15 C 0.04 1.03 5.42 -17.33 -0.09 0.94 16 16 N -0.80 -20.74 13.66 55.55 0.76 -19.98 16 17 Si 1.07 23.25 24.90 -169.99 -4.23 19.02 16 18 H -0.27 -5.56 6.43 56.52 0.36 -5.20 16 19 H -0.26 -5.67 7.03 56.52 0.40 -5.27 16 20 H -0.29 -6.07 7.11 56.52 0.40 -5.66 16 21 C -0.23 -5.41 6.84 -39.27 -0.27 -5.68 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.06 0.83 8.08 -51.92 -0.42 0.41 16 24 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 25 H 0.11 1.99 8.06 -52.49 -0.42 1.57 16 26 H 0.05 1.15 8.14 -51.92 -0.42 0.73 16 27 H 0.04 0.79 7.87 -51.93 -0.41 0.38 16 28 H 0.11 1.89 8.14 -51.93 -0.42 1.47 16 29 H 0.09 1.26 8.03 -51.93 -0.42 0.84 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.29 7.32 8.73 -40.82 -0.36 6.96 16 34 H 0.11 2.56 4.38 -52.49 -0.23 2.33 16 LS Contribution 303.13 15.07 4.57 4.57 Total: -1.00 -26.30 303.13 -8.22 -34.52 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.46 Total: 3.74 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: -3.21 Total: -31.00 kcal Atomic # 7 Polarization: -20.74 SS G_CDS: 0.76 Total: -19.98 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.17 Total: -7.35 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -4.23 Total: 19.02 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -1.48 Total: -3.51 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.30 -8.22 -34.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216967930.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.429 kcal (2) G-P(sol) polarization free energy of solvation -26.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds