Wall clock time and date at job start Mon Mar 30 2020 07:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38823 * 119.73017 * 2 1 4 4 C 1.38382 * 120.57830 * 180.02562 * 3 2 1 5 5 Cl 1.73595 * 119.98450 * 179.97438 * 4 3 2 6 6 C 1.38558 * 120.02873 * 359.73580 * 4 3 2 7 7 O 1.35677 * 120.27067 * 180.28181 * 6 4 3 8 8 C 1.42902 * 116.99993 * 270.25874 * 7 6 4 9 9 C 1.52999 * 109.47282 * 179.97438 * 8 7 6 10 10 C 1.52994 * 117.49898 * 243.61963 * 9 8 7 11 11 C 1.52988 * 59.99942 * 252.50978 * 10 9 8 12 12 C 1.41273 * 119.46295 * 0.53651 * 6 4 3 13 13 C 1.41163 * 120.28613 * 179.74528 * 12 6 4 14 14 H 1.07996 * 119.99982 * 28.49741 * 13 12 6 15 15 C 1.39930 * 119.99932 * 208.49441 * 13 12 6 16 16 N 1.30865 * 119.99787 * 197.68262 * 15 13 12 17 17 Si 1.86805 * 120.00279 * 17.68015 * 15 13 12 18 18 H 1.48500 * 109.47080 * 270.00330 * 17 15 13 19 19 H 1.48496 * 109.46593 * 30.00044 * 17 15 13 20 20 H 1.48496 * 109.47135 * 149.99963 * 17 15 13 21 21 C 1.36478 * 119.72041 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.47568 * 269.98413 * 1 2 3 23 23 H 1.09009 * 109.46961 * 29.97852 * 1 2 3 24 24 H 1.08998 * 109.47547 * 149.97498 * 1 2 3 25 25 H 1.07993 * 119.70699 * 359.97438 * 3 2 1 26 26 H 1.09008 * 109.46858 * 300.00051 * 8 7 6 27 27 H 1.09004 * 109.47052 * 59.99553 * 8 7 6 28 28 H 1.08999 * 115.54590 * 29.32401 * 9 8 7 29 29 H 1.09003 * 117.49758 * 0.02562 * 10 9 8 30 30 H 1.09000 * 117.49521 * 145.01468 * 10 9 8 31 31 H 1.09005 * 117.50358 * 252.50887 * 11 10 9 32 32 H 1.09000 * 117.50187 * 107.49112 * 11 10 9 33 33 H 0.97000 * 120.00231 * 355.44410 * 16 15 13 34 34 H 1.07995 * 120.03005 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2055 0.0000 4 6 3.5791 1.2260 -0.0005 5 17 4.4243 2.7423 -0.0012 6 6 4.2902 0.0368 0.0045 7 8 5.6469 0.0512 0.0097 8 6 6.3005 0.0614 -1.2610 9 6 7.8164 0.0776 -1.0547 10 6 8.5842 1.3031 -1.5540 11 6 8.6999 -0.0280 -2.2992 12 6 3.5911 -1.1909 -0.0014 13 6 4.2981 -2.4127 -0.0019 14 1 5.2783 -2.4696 0.4480 15 6 3.7289 -3.5501 -0.5852 16 7 4.1975 -4.7375 -0.2967 17 14 2.3001 -3.3738 -1.7757 18 1 1.0205 -3.4234 -1.0239 19 1 2.4063 -2.0747 -2.4872 20 1 2.3380 -4.4831 -2.7622 21 6 2.1836 -1.1853 -0.0005 22 1 -0.3634 -0.0003 1.0276 23 1 -0.3633 0.8903 -0.5135 24 1 -0.3634 -0.8897 -0.5142 25 1 1.6463 2.1354 -0.0004 26 1 6.0191 -0.8302 -1.8215 27 1 6.0002 0.9497 -1.8169 28 1 8.1718 -0.4024 -0.1429 29 1 8.0094 2.0980 -2.0291 30 1 9.4450 1.6297 -0.9705 31 1 9.6368 -0.5772 -2.2063 32 1 8.2012 -0.1091 -3.2651 33 1 4.9805 -4.8256 0.2690 34 1 1.6396 -2.1182 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216967930.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:34 Heat of formation + Delta-G solvation = -32.897376 kcal Electronic energy + Delta-G solvation = -17991.316172 eV Core-core repulsion = 15107.654841 eV Total energy + Delta-G solvation = -2883.661330 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.66392 -38.86388 -37.40934 -37.31337 -35.81109 -32.80479 -31.91632 -28.64116 -27.23110 -26.26685 -23.49840 -23.28619 -21.67317 -21.59421 -20.12820 -18.71060 -17.34605 -16.98957 -16.42077 -15.98401 -15.60117 -15.30717 -15.03712 -14.64848 -14.41845 -14.30097 -14.11576 -13.31549 -13.19088 -12.91430 -12.76130 -12.48230 -12.44097 -12.20673 -11.93201 -11.86311 -11.68656 -11.43809 -11.37190 -11.24373 -10.95039 -10.39892 -9.71209 -9.34028 -9.15994 -6.64710 0.42768 0.59872 1.31821 1.32625 1.50214 1.71270 2.12057 2.41742 2.70440 2.96966 3.34356 3.87570 3.93070 4.06883 4.14831 4.26824 4.40680 4.56323 4.60184 4.62013 4.70085 4.73846 4.83132 4.92702 4.93628 5.09561 5.15618 5.18958 5.24528 5.31841 5.46971 5.59109 5.78446 5.91701 6.21552 6.33287 6.65789 6.98589 7.89948 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.009444 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.429281 B = 2964.280010 C = 4524.605925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.037 4.037 3 C -0.218 4.218 4 C -0.007 4.007 5 Cl -0.081 7.081 6 C -0.039 4.039 7 O -0.329 6.329 8 C 0.101 3.899 9 C -0.176 4.176 10 C -0.161 4.161 11 C -0.160 4.160 12 C 0.072 3.928 13 C -0.517 4.517 14 H 0.046 0.954 15 C 0.012 3.988 16 N -0.831 5.831 17 Si 1.097 2.903 18 H -0.245 1.245 19 H -0.263 1.263 20 H -0.279 1.279 21 C -0.244 4.244 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.068 0.932 25 H 0.141 0.859 26 H 0.028 0.972 27 H 0.047 0.953 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.279 0.721 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.086 9.395 -4.153 10.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.038 4.038 3 C -0.238 4.238 4 C -0.034 4.034 5 Cl -0.052 7.052 6 C -0.085 4.085 7 O -0.246 6.246 8 C 0.027 3.973 9 C -0.194 4.194 10 C -0.197 4.197 11 C -0.196 4.196 12 C 0.068 3.932 13 C -0.546 4.546 14 H 0.065 0.935 15 C -0.203 4.203 16 N -0.454 5.454 17 Si 0.917 3.083 18 H -0.170 1.170 19 H -0.187 1.187 20 H -0.205 1.205 21 C -0.263 4.263 22 H 0.101 0.899 23 H 0.105 0.895 24 H 0.087 0.913 25 H 0.159 0.841 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.861 8.571 -4.852 10.024 hybrid contribution 1.791 0.468 1.238 2.227 sum -0.071 9.039 -3.614 9.735 Atomic orbital electron populations 1.20857 0.88715 1.03615 1.03351 1.19644 0.97404 0.91539 0.95190 1.20504 0.90413 0.98485 1.14377 1.21324 0.93227 0.84775 1.04032 1.98271 1.78799 1.31106 1.96996 1.18563 0.83014 0.90967 1.15918 1.85917 1.15743 1.94042 1.28910 1.22078 0.91136 0.98710 0.85400 1.22028 0.91265 1.05850 1.00269 1.23116 1.02387 0.91134 1.03093 1.23066 1.00987 1.00534 0.95057 1.18114 0.92789 0.92216 0.90050 1.20393 1.04127 0.95117 1.34968 0.93528 1.28389 1.03682 0.90536 0.97657 1.70607 1.20000 1.25192 1.29552 0.83334 0.73306 0.76940 0.74672 1.17040 1.18740 1.20534 1.20960 0.93070 0.98262 1.14009 0.89884 0.89549 0.91263 0.84139 0.95352 0.93474 0.88551 0.88454 0.87070 0.86790 0.88268 0.91032 0.86583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.99 9.99 71.24 0.71 -2.27 16 2 C -0.04 -1.43 5.84 -20.14 -0.12 -1.54 16 3 C -0.22 -8.32 9.47 22.44 0.21 -8.11 16 4 C -0.01 -0.28 6.33 22.38 0.14 -0.14 16 5 Cl -0.08 -2.94 28.50 -2.72 -0.08 -3.02 16 6 C -0.04 -1.91 5.75 23.09 0.13 -1.78 16 7 O -0.33 -15.86 8.86 -89.94 -0.80 -16.66 16 8 C 0.10 4.18 6.34 71.98 0.46 4.63 16 9 C -0.18 -5.94 6.06 -10.80 -0.07 -6.01 16 10 C -0.16 -4.13 10.18 30.59 0.31 -3.82 16 11 C -0.16 -4.11 10.25 30.59 0.31 -3.80 16 12 C 0.07 3.69 5.15 -21.20 -0.11 3.58 16 13 C -0.52 -28.76 9.07 23.40 0.21 -28.55 16 14 H 0.05 2.85 7.88 -2.91 -0.02 2.83 16 15 C 0.01 0.64 5.42 85.25 0.46 1.10 16 16 N -0.83 -45.28 13.66 21.83 0.30 -44.98 16 17 Si 1.10 46.89 24.90 68.60 1.71 48.60 16 18 H -0.25 -9.32 6.43 99.48 0.64 -8.68 16 19 H -0.26 -11.12 7.03 99.48 0.70 -10.42 16 20 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 21 C -0.24 -11.05 6.84 22.47 0.15 -10.90 16 22 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.09 1.93 8.08 -2.38 -0.02 1.91 16 24 H 0.07 1.80 8.07 -2.39 -0.02 1.78 16 25 H 0.14 4.45 8.06 -2.91 -0.02 4.42 16 26 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.05 1.83 7.87 -2.38 -0.02 1.81 16 28 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 29 H 0.10 2.43 8.03 -2.39 -0.02 2.41 16 30 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 32 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.28 15.24 8.73 -92.71 -0.81 14.43 16 34 H 0.12 5.12 4.38 -2.91 -0.01 5.10 16 Total: -1.00 -59.70 303.13 4.93 -54.77 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.98 Total: 18.90 kcal Atomic # 6 Polarization: -60.43 SS G_CDS: 2.82 Total: -57.61 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.30 Total: -44.98 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.80 Total: -16.66 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.71 Total: 48.60 kcal Atomic # 17 Polarization: -2.94 SS G_CDS: -0.08 Total: -3.02 kcal Total: -59.70 4.93 -54.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216967930.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.872 kcal (2) G-P(sol) polarization free energy of solvation -59.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds