Wall clock time and date at job start Mon Mar 30 2020 06:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86793 * 120.00208 * 2 1 4 4 H 1.48501 * 109.47370 * 239.99900 * 3 2 1 5 5 H 1.48504 * 109.47089 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47565 * 119.99577 * 3 2 1 7 7 C 1.39941 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00022 * 197.75394 * 7 2 1 9 9 C 1.41402 * 119.99816 * 17.74316 * 7 2 1 10 10 C 1.40743 * 120.21234 * 204.35037 * 9 7 2 11 11 C 1.37743 * 119.84368 * 180.02562 * 10 9 7 12 12 Cl 1.73601 * 119.85936 * 180.02562 * 11 10 9 13 13 C 1.38680 * 120.28350 * 359.97438 * 11 10 9 14 14 C 1.39092 * 120.42510 * 359.97438 * 13 11 10 15 15 O 1.35906 * 119.92287 * 180.02562 * 14 13 11 16 16 C 1.42900 * 117.00142 * 0.02562 * 15 14 13 17 17 C 1.53000 * 109.46941 * 179.97438 * 16 15 14 18 18 C 1.53780 * 113.60947 * 185.00016 * 17 16 15 19 19 C 1.53790 * 87.17186 * 219.89322 * 18 17 16 20 20 C 1.53780 * 113.68790 * 87.46709 * 17 16 15 21 21 C 1.38147 * 120.15287 * 0.28499 * 14 13 11 22 22 H 0.97002 * 120.00112 * 0.02562 * 1 2 3 23 23 H 1.08008 * 120.07580 * 0.02846 * 10 9 7 24 24 H 1.07996 * 119.78971 * 180.02562 * 13 11 10 25 25 H 1.08995 * 109.46700 * 59.99761 * 16 15 14 26 26 H 1.09004 * 109.46711 * 300.00103 * 16 15 14 27 27 H 1.08993 * 112.85273 * 316.19630 * 17 16 15 28 28 H 1.08999 * 113.61961 * 334.48134 * 18 17 16 29 29 H 1.09004 * 113.61606 * 105.30757 * 18 17 16 30 30 H 1.08997 * 113.61533 * 140.02773 * 19 18 17 31 31 H 1.08999 * 113.61033 * 270.92971 * 19 18 17 32 32 H 1.09002 * 113.61420 * 254.53644 * 20 17 16 33 33 H 1.08995 * 113.62056 * 25.35443 * 20 17 16 34 34 H 1.07999 * 120.14388 * 179.73849 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0494 -1.2340 0.2857 9 6 1.3514 -2.4075 -0.3721 10 6 1.8269 -3.6497 0.0880 11 6 1.1818 -4.8097 -0.2802 12 17 1.7677 -6.3420 0.2876 13 6 0.0657 -4.7586 -1.1016 14 6 -0.4148 -3.5372 -1.5621 15 8 -1.5097 -3.4991 -2.3662 16 6 -2.1158 -4.7502 -2.6969 17 6 -3.3251 -4.5076 -3.6023 18 6 -4.1233 -5.7833 -3.9187 19 6 -4.2703 -5.2445 -5.3516 20 6 -2.9750 -4.4499 -5.0986 21 6 0.2217 -2.3633 -1.2083 22 1 -0.4850 0.8401 -0.0004 23 1 2.6957 -3.6932 0.7283 24 1 -0.4342 -5.6730 -1.3850 25 1 -2.4401 -5.2493 -1.7839 26 1 -1.3922 -5.3782 -3.2169 27 1 -3.9452 -3.6765 -3.2666 28 1 -3.5313 -6.6962 -3.8542 29 1 -5.0680 -5.8525 -3.3793 30 1 -4.1706 -6.0120 -6.1191 31 1 -5.1484 -4.6145 -5.4932 32 1 -2.9932 -3.4417 -5.5127 33 1 -2.0682 -4.9969 -5.3563 34 1 -0.1490 -1.4153 -1.5693 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216967953.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:03 Heat of formation + Delta-G solvation = -24.939387 kcal Electronic energy + Delta-G solvation = -17355.191880 eV Core-core repulsion = 14471.875634 eV Total energy + Delta-G solvation = -2883.316246 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.34649 -38.19143 -36.41632 -35.44618 -33.45970 -29.67921 -29.52549 -27.61353 -25.59416 -25.53075 -22.91764 -21.19919 -20.53661 -19.34423 -17.89863 -16.20097 -15.92597 -15.31947 -15.04793 -14.72817 -14.64300 -14.09369 -13.49897 -12.91486 -12.60434 -12.48728 -12.44772 -11.96307 -11.74359 -11.52087 -11.27431 -11.03458 -10.91535 -10.64174 -10.47575 -10.40652 -10.24603 -10.14646 -9.88761 -9.77904 -9.68444 -9.11223 -7.55800 -7.06538 -6.82505 -4.54215 2.61551 2.79078 3.02611 3.04172 3.12256 3.16410 3.85757 3.96628 4.46311 4.61814 4.68672 4.80533 4.96601 5.46559 5.49794 5.58022 5.69060 5.72208 5.75341 5.85814 5.93229 6.05437 6.20867 6.25417 6.45430 6.53771 6.59699 6.90362 7.07550 7.22152 7.38367 7.64402 7.75202 7.91439 8.25773 8.62994 8.72499 8.75928 10.05799 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.005875 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.622575 B = 4765.187026 C = 6483.081501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.076 3.924 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.453 4.453 8 H 0.084 0.916 9 C 0.143 3.857 10 C -0.239 4.239 11 C 0.036 3.964 12 Cl -0.124 7.124 13 C -0.318 4.318 14 C 0.146 3.854 15 O -0.319 6.319 16 C 0.074 3.926 17 C -0.109 4.109 18 C -0.132 4.132 19 C -0.142 4.142 20 C -0.134 4.134 21 C -0.196 4.196 22 H 0.285 0.715 23 H 0.105 0.895 24 H 0.104 0.896 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.286 -5.691 -6.102 9.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.481 4.481 8 H 0.102 0.898 9 C 0.140 3.860 10 C -0.259 4.259 11 C 0.010 3.990 12 Cl -0.095 7.095 13 C -0.338 4.338 14 C 0.102 3.898 15 O -0.234 6.234 16 C -0.002 4.002 17 C -0.127 4.127 18 C -0.170 4.170 19 C -0.180 4.180 20 C -0.172 4.172 21 C -0.216 4.216 22 H 0.096 0.904 23 H 0.124 0.876 24 H 0.122 0.878 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.117 0.883 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.547 -5.500 -6.117 9.921 hybrid contribution 0.385 0.288 0.247 0.541 sum -5.162 -5.212 -5.869 9.394 Atomic orbital electron populations 1.69824 1.07688 1.29819 1.32983 1.25975 0.94773 1.01586 0.92049 0.86294 0.80140 0.79788 0.80162 1.18596 1.20183 1.18824 1.19551 0.98257 0.90787 1.39551 0.89793 1.17191 0.89928 0.91424 0.87433 1.20864 1.05122 0.90921 1.08975 1.20255 0.96204 0.83930 0.98623 1.98258 1.88778 1.33567 1.88941 1.20207 1.03974 0.96126 1.13518 1.18677 0.86343 0.93810 0.90985 1.86027 1.41695 1.30732 1.64910 1.22582 0.93633 0.86124 0.97838 1.22557 0.96288 0.99065 0.94827 1.22895 1.00083 0.97249 0.96751 1.22853 0.98456 0.99849 0.96818 1.23009 0.97586 1.00805 0.95774 1.20671 1.00784 0.95440 1.04689 0.90413 0.87640 0.87759 0.92794 0.92774 0.88337 0.90007 0.91309 0.91532 0.90244 0.91277 0.90063 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.75 10.95 55.55 0.61 -19.14 16 2 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 3 Si 0.91 18.07 29.59 -169.99 -5.03 13.04 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.45 -11.67 9.05 -37.74 -0.34 -12.01 16 8 H 0.08 2.05 7.91 -52.49 -0.41 1.64 16 9 C 0.14 3.78 5.57 -106.85 -0.60 3.18 16 10 C -0.24 -5.86 9.56 -38.82 -0.37 -6.23 16 11 C 0.04 0.83 6.31 -39.60 -0.25 0.58 16 12 Cl -0.12 -2.42 28.94 -51.86 -1.50 -3.92 16 13 C -0.32 -7.22 8.83 -39.10 -0.35 -7.56 16 14 C 0.15 3.52 6.67 -39.30 -0.26 3.25 16 15 O -0.32 -6.90 10.13 -19.45 -0.20 -7.09 16 16 C 0.07 1.24 4.58 37.16 0.17 1.41 16 17 C -0.11 -1.47 4.01 -89.81 -0.36 -1.83 16 18 C -0.13 -1.41 7.63 -25.91 -0.20 -1.61 16 19 C -0.14 -1.41 8.10 -25.77 -0.21 -1.62 16 20 C -0.13 -1.63 7.64 -25.78 -0.20 -1.83 16 21 C -0.20 -5.13 8.63 -38.72 -0.33 -5.46 16 22 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 23 H 0.11 2.46 8.06 -52.48 -0.42 2.04 16 24 H 0.10 2.14 6.27 -52.49 -0.33 1.81 16 25 H 0.05 0.89 7.65 -51.93 -0.40 0.49 16 26 H 0.05 0.87 7.36 -51.93 -0.38 0.49 16 27 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.99 7.90 -51.93 -0.41 0.58 16 34 H 0.13 3.55 6.16 -52.49 -0.32 3.23 16 LS Contribution 301.08 15.07 4.54 4.54 Total: -1.00 -26.67 301.08 -9.31 -35.98 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -4.35 Total: 4.55 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: -3.38 Total: -27.96 kcal Atomic # 7 Polarization: -19.75 SS G_CDS: 0.61 Total: -19.14 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.20 Total: -7.09 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 17 Polarization: -2.42 SS G_CDS: -1.50 Total: -3.92 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -26.67 -9.31 -35.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216967953.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.042 kcal (2) G-P(sol) polarization free energy of solvation -26.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds