Wall clock time and date at job start Mon Mar 30 2020 06:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86793 * 120.00208 * 2 1 4 4 H 1.48501 * 109.47370 * 239.99900 * 3 2 1 5 5 H 1.48504 * 109.47089 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47565 * 119.99577 * 3 2 1 7 7 C 1.39941 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00022 * 197.75394 * 7 2 1 9 9 C 1.41402 * 119.99816 * 17.74316 * 7 2 1 10 10 C 1.40743 * 120.21234 * 204.35037 * 9 7 2 11 11 C 1.37743 * 119.84368 * 180.02562 * 10 9 7 12 12 Cl 1.73601 * 119.85936 * 180.02562 * 11 10 9 13 13 C 1.38680 * 120.28350 * 359.97438 * 11 10 9 14 14 C 1.39092 * 120.42510 * 359.97438 * 13 11 10 15 15 O 1.35906 * 119.92287 * 180.02562 * 14 13 11 16 16 C 1.42900 * 117.00142 * 0.02562 * 15 14 13 17 17 C 1.53000 * 109.46941 * 179.97438 * 16 15 14 18 18 C 1.53780 * 113.60947 * 185.00016 * 17 16 15 19 19 C 1.53790 * 87.17186 * 219.89322 * 18 17 16 20 20 C 1.53780 * 113.68790 * 87.46709 * 17 16 15 21 21 C 1.38147 * 120.15287 * 0.28499 * 14 13 11 22 22 H 0.97002 * 120.00112 * 0.02562 * 1 2 3 23 23 H 1.08008 * 120.07580 * 0.02846 * 10 9 7 24 24 H 1.07996 * 119.78971 * 180.02562 * 13 11 10 25 25 H 1.08995 * 109.46700 * 59.99761 * 16 15 14 26 26 H 1.09004 * 109.46711 * 300.00103 * 16 15 14 27 27 H 1.08993 * 112.85273 * 316.19630 * 17 16 15 28 28 H 1.08999 * 113.61961 * 334.48134 * 18 17 16 29 29 H 1.09004 * 113.61606 * 105.30757 * 18 17 16 30 30 H 1.08997 * 113.61533 * 140.02773 * 19 18 17 31 31 H 1.08999 * 113.61033 * 270.92971 * 19 18 17 32 32 H 1.09002 * 113.61420 * 254.53644 * 20 17 16 33 33 H 1.08995 * 113.62056 * 25.35443 * 20 17 16 34 34 H 1.07999 * 120.14388 * 179.73849 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0494 -1.2340 0.2857 9 6 1.3514 -2.4075 -0.3721 10 6 1.8269 -3.6497 0.0880 11 6 1.1818 -4.8097 -0.2802 12 17 1.7677 -6.3420 0.2876 13 6 0.0657 -4.7586 -1.1016 14 6 -0.4148 -3.5372 -1.5621 15 8 -1.5097 -3.4991 -2.3662 16 6 -2.1158 -4.7502 -2.6969 17 6 -3.3251 -4.5076 -3.6023 18 6 -4.1233 -5.7833 -3.9187 19 6 -4.2703 -5.2445 -5.3516 20 6 -2.9750 -4.4499 -5.0986 21 6 0.2217 -2.3633 -1.2083 22 1 -0.4850 0.8401 -0.0004 23 1 2.6957 -3.6932 0.7283 24 1 -0.4342 -5.6730 -1.3850 25 1 -2.4401 -5.2493 -1.7839 26 1 -1.3922 -5.3782 -3.2169 27 1 -3.9452 -3.6765 -3.2666 28 1 -3.5313 -6.6962 -3.8542 29 1 -5.0680 -5.8525 -3.3793 30 1 -4.1706 -6.0120 -6.1191 31 1 -5.1484 -4.6145 -5.4932 32 1 -2.9932 -3.4417 -5.5127 33 1 -2.0682 -4.9969 -5.3563 34 1 -0.1490 -1.4153 -1.5693 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216967953.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:02 Heat of formation + Delta-G solvation = -36.809921 kcal Electronic energy + Delta-G solvation = -17355.706625 eV Core-core repulsion = 14471.875634 eV Total energy + Delta-G solvation = -2883.830991 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.82830 -39.51598 -38.09005 -37.18748 -35.30264 -31.55442 -31.11818 -29.12091 -27.40058 -26.49353 -24.17117 -23.02519 -22.26592 -20.34546 -19.67496 -18.01459 -17.30301 -16.80397 -16.62849 -16.46542 -15.96505 -15.51375 -15.19015 -14.59535 -14.14210 -14.01404 -13.41918 -13.34479 -13.25134 -13.06339 -12.83980 -12.71812 -12.30484 -12.14863 -12.05643 -11.78737 -11.62132 -11.49205 -11.43921 -11.24510 -11.05738 -10.89360 -9.45118 -8.91905 -8.66509 -6.49520 0.76621 0.90789 1.34731 1.40620 1.50816 1.54484 2.19289 2.47400 2.62289 3.54625 3.64741 3.71970 3.86910 3.96890 4.26623 4.40461 4.43429 4.51796 4.65035 4.73149 4.83341 4.84536 4.92943 5.01066 5.08797 5.10357 5.17156 5.29495 5.35863 5.53506 5.58629 5.75388 5.86461 5.98436 6.36947 6.76732 6.81543 6.88897 8.24812 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.005875 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.622575 B = 4765.187026 C = 6483.081501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.037 3.963 3 Si 0.987 3.013 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.255 1.255 7 C -0.485 4.485 8 H 0.088 0.912 9 C 0.120 3.880 10 C -0.256 4.256 11 C 0.034 3.966 12 Cl -0.089 7.089 13 C -0.316 4.316 14 C 0.147 3.853 15 O -0.334 6.334 16 C 0.067 3.933 17 C -0.118 4.118 18 C -0.122 4.122 19 C -0.129 4.129 20 C -0.141 4.141 21 C -0.227 4.227 22 H 0.292 0.708 23 H 0.111 0.889 24 H 0.129 0.871 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.650 -6.588 -6.634 10.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.179 1.179 7 C -0.513 4.513 8 H 0.106 0.894 9 C 0.117 3.883 10 C -0.276 4.276 11 C 0.008 3.992 12 Cl -0.060 7.060 13 C -0.336 4.336 14 C 0.102 3.898 15 O -0.249 6.249 16 C -0.008 4.008 17 C -0.137 4.137 18 C -0.160 4.160 19 C -0.166 4.166 20 C -0.178 4.178 21 C -0.247 4.247 22 H 0.103 0.897 23 H 0.129 0.871 24 H 0.146 0.854 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.923 -6.428 -6.651 10.984 hybrid contribution 0.445 0.424 0.404 0.735 sum -5.478 -6.004 -6.247 10.251 Atomic orbital electron populations 1.69889 1.09297 1.31168 1.33317 1.26879 0.95457 1.04875 0.90853 0.85174 0.78757 0.75037 0.80347 1.18270 1.19156 1.17911 1.19872 0.98717 0.91817 1.40936 0.89391 1.17521 0.90376 0.92587 0.87823 1.20972 1.05777 0.91131 1.09708 1.20377 0.95813 0.85157 0.97883 1.98261 1.88374 1.30911 1.88485 1.20440 1.03805 0.96483 1.12899 1.18755 0.86635 0.93686 0.90697 1.86024 1.40908 1.33800 1.64195 1.22953 0.94665 0.84463 0.98682 1.22678 0.95340 1.00789 0.94881 1.22902 1.00066 0.95874 0.97141 1.22815 0.97259 0.99757 0.96787 1.23067 0.99053 1.01007 0.94717 1.20599 1.02158 0.95531 1.06459 0.89712 0.87087 0.85364 0.92536 0.92047 0.89241 0.89178 0.90071 0.89802 0.89285 0.91992 0.90161 0.87281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.41 10.95 21.83 0.24 -42.17 16 2 C 0.04 1.81 5.14 85.26 0.44 2.25 16 3 Si 0.99 37.18 29.59 68.60 2.03 39.21 16 4 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 5 H -0.27 -9.54 7.11 99.48 0.71 -8.84 16 6 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 7 C -0.49 -25.73 9.05 23.46 0.21 -25.51 16 8 H 0.09 4.41 7.91 -2.91 -0.02 4.38 16 9 C 0.12 6.53 5.57 -21.31 -0.12 6.41 16 10 C -0.26 -12.74 9.56 22.77 0.22 -12.52 16 11 C 0.03 1.56 6.31 22.26 0.14 1.70 16 12 Cl -0.09 -3.31 28.94 -2.72 -0.08 -3.39 16 13 C -0.32 -14.19 8.83 22.58 0.20 -13.99 16 14 C 0.15 7.22 6.67 22.45 0.15 7.37 16 15 O -0.33 -14.69 10.13 -92.49 -0.94 -15.63 16 16 C 0.07 2.20 4.58 71.98 0.33 2.53 16 17 C -0.12 -3.07 4.01 -10.27 -0.04 -3.12 16 18 C -0.12 -2.29 7.63 31.12 0.24 -2.06 16 19 C -0.13 -2.20 8.10 31.22 0.25 -1.95 16 20 C -0.14 -3.25 7.64 31.21 0.24 -3.01 16 21 C -0.23 -12.40 8.63 22.83 0.20 -12.20 16 22 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 23 H 0.11 5.24 8.06 -2.91 -0.02 5.22 16 24 H 0.13 5.03 6.27 -2.91 -0.02 5.01 16 25 H 0.06 1.80 7.65 -2.39 -0.02 1.78 16 26 H 0.06 1.91 7.36 -2.38 -0.02 1.89 16 27 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.09 1.56 8.10 -2.39 -0.02 1.54 16 29 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.85 7.90 -2.39 -0.02 1.83 16 34 H 0.11 6.30 6.16 -2.91 -0.02 6.28 16 Total: -1.00 -58.34 301.08 4.80 -53.53 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 1.10 Total: 22.53 kcal Atomic # 6 Polarization: -56.55 SS G_CDS: 2.45 Total: -54.09 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.24 Total: -42.17 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.94 Total: -15.63 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Atomic # 17 Polarization: -3.31 SS G_CDS: -0.08 Total: -3.39 kcal Total: -58.34 4.80 -53.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216967953.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.722 kcal (2) G-P(sol) polarization free energy of solvation -58.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds