Wall clock time and date at job start Mon Mar 30 2020 06:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86793 * 119.99956 * 2 1 4 4 H 1.48497 * 109.47274 * 240.00341 * 3 2 1 5 5 H 1.48506 * 109.47048 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47232 * 119.99871 * 3 2 1 7 7 C 1.39930 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99946 * 197.71852 * 7 2 1 9 9 C 1.41149 * 120.00348 * 17.71859 * 7 2 1 10 10 C 1.40738 * 120.27992 * 24.62268 * 9 7 2 11 11 C 1.37569 * 119.79555 * 180.02562 * 10 9 7 12 12 Cl 1.73602 * 119.80857 * 180.02562 * 11 10 9 13 13 C 1.38961 * 120.38275 * 359.97438 * 11 10 9 14 14 C 1.38275 * 120.57538 * 0.04267 * 13 11 10 15 15 C 1.38404 * 120.19148 * 0.25650 * 14 13 11 16 16 O 1.35654 * 120.19178 * 179.71730 * 15 14 13 17 17 C 1.42909 * 116.99946 * 0.02562 * 16 15 14 18 18 C 1.53005 * 109.46833 * 179.97438 * 17 16 15 19 19 C 1.53782 * 113.61224 * 274.13108 * 18 17 16 20 20 C 1.53950 * 87.01915 * 220.05218 * 19 18 17 21 21 C 1.53778 * 113.60894 * 176.52940 * 18 17 16 22 22 H 0.97005 * 120.00350 * 359.97438 * 1 2 3 23 23 H 1.07996 * 120.10133 * 0.04054 * 10 9 7 24 24 H 1.07993 * 119.70926 * 180.02562 * 13 11 10 25 25 H 1.08006 * 119.90330 * 179.97438 * 14 13 11 26 26 H 1.08994 * 109.46482 * 299.99027 * 17 16 15 27 27 H 1.08992 * 109.47378 * 59.99623 * 17 16 15 28 28 H 1.08996 * 112.85337 * 45.32515 * 18 17 16 29 29 H 1.09006 * 113.61344 * 334.57398 * 19 18 17 30 30 H 1.09000 * 113.61613 * 105.47086 * 19 18 17 31 31 H 1.08999 * 113.53941 * 270.80868 * 20 19 18 32 32 H 1.08998 * 113.66711 * 139.93113 * 20 19 18 33 33 H 1.09003 * 113.61060 * 254.52140 * 21 18 17 34 34 H 1.08991 * 113.62214 * 25.34162 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.0963 1.6964 -1.2125 5 1 1.2776 2.7464 0.0006 6 1 3.0963 1.6964 1.2125 7 6 2.0083 -1.2119 -0.0005 8 1 3.0499 -1.2342 0.2841 9 6 1.3528 -2.4051 -0.3731 10 6 0.2225 -2.3622 -1.2106 11 6 -0.4090 -3.5312 -1.5670 12 17 -1.8028 -3.4787 -2.6006 13 6 0.0630 -4.7540 -1.1054 14 6 1.1719 -4.8143 -0.2815 15 6 1.8218 -3.6524 0.0969 16 8 2.9062 -3.7111 0.9098 17 6 3.3257 -5.0080 1.3392 18 6 4.5543 -4.8739 2.2412 19 6 5.8829 -4.8208 1.4685 20 6 6.4701 -5.7143 2.5761 21 6 5.0367 -6.2111 2.8276 22 1 -0.4851 0.8401 0.0004 23 1 -0.1477 -1.4144 -1.5725 24 1 -0.4409 -5.6650 -1.3923 25 1 1.5292 -5.7705 0.0713 26 1 2.5181 -5.4859 1.8935 27 1 3.5783 -5.6146 0.4696 28 1 4.4496 -4.0835 2.9843 29 1 5.8404 -5.3055 0.4931 30 1 6.3253 -3.8254 1.4286 31 1 6.8906 -5.1533 3.4108 32 1 7.1415 -6.4882 2.2041 33 1 4.7971 -6.3365 3.8836 34 1 4.7613 -7.0768 2.2254 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216967972.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:10 Heat of formation + Delta-G solvation = -33.197018 kcal Electronic energy + Delta-G solvation = -17558.644643 eV Core-core repulsion = 14674.970319 eV Total energy + Delta-G solvation = -2883.674324 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.73256 -39.48893 -37.91418 -36.86609 -35.46460 -31.87202 -30.59184 -29.27813 -27.15414 -26.46291 -24.34527 -22.75442 -22.23299 -20.32356 -19.38614 -18.37576 -17.41172 -16.75920 -16.51985 -16.32368 -15.88760 -15.42665 -14.86329 -14.52545 -14.09377 -13.97275 -13.34418 -13.31571 -13.23125 -13.15608 -12.84119 -12.72926 -12.28329 -12.18987 -12.00688 -11.82838 -11.49369 -11.35842 -11.23198 -11.20907 -11.02921 -10.93291 -9.53101 -8.86615 -8.59240 -6.29312 0.79150 0.88461 1.37884 1.47726 1.51264 1.55137 2.20726 2.62769 2.68177 3.53675 3.70020 3.76148 3.91377 4.01265 4.22967 4.35580 4.41776 4.56027 4.58909 4.84899 4.86021 4.86981 4.97388 5.07206 5.10616 5.13748 5.25746 5.28610 5.35915 5.58961 5.67297 5.69149 5.85920 6.13475 6.35865 6.69098 6.83307 7.14375 8.30647 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.013744 B = 0.006770 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.744556 B = 4134.762569 C = 5984.699867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.035 3.965 3 Si 0.979 3.021 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.261 1.261 7 C -0.475 4.475 8 H 0.076 0.924 9 C 0.069 3.931 10 C -0.163 4.163 11 C -0.038 4.038 12 Cl -0.102 7.102 13 C -0.200 4.200 14 C -0.169 4.169 15 C 0.013 3.987 16 O -0.326 6.326 17 C 0.066 3.934 18 C -0.118 4.118 19 C -0.141 4.141 20 C -0.129 4.129 21 C -0.121 4.121 22 H 0.290 0.710 23 H 0.117 0.883 24 H 0.129 0.871 25 H 0.137 0.863 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.370 -7.949 3.003 11.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.180 4.180 3 Si 0.800 3.200 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.185 1.185 7 C -0.504 4.504 8 H 0.094 0.906 9 C 0.066 3.934 10 C -0.184 4.184 11 C -0.064 4.064 12 Cl -0.074 7.074 13 C -0.220 4.220 14 C -0.188 4.188 15 C -0.032 4.032 16 O -0.241 6.241 17 C -0.009 4.009 18 C -0.137 4.137 19 C -0.178 4.178 20 C -0.167 4.167 21 C -0.158 4.158 22 H 0.101 0.899 23 H 0.135 0.865 24 H 0.147 0.853 25 H 0.155 0.845 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.154 -7.638 3.008 10.889 hybrid contribution -0.324 0.711 -0.212 0.810 sum 6.831 -6.927 2.796 10.122 Atomic orbital electron populations 1.69862 1.08869 1.30820 1.35170 1.26727 0.95476 1.04398 0.91404 0.85287 0.78876 0.75765 0.80067 1.18439 1.18939 1.18507 1.19521 0.98243 0.91870 1.40761 0.90618 1.17279 0.92778 0.91378 0.91931 1.20904 0.99344 0.96334 1.01771 1.20757 0.91260 0.95496 0.98935 1.98241 1.42825 1.98995 1.67327 1.20338 1.00506 0.95401 1.05744 1.20860 0.98484 0.96665 1.02779 1.19402 0.91829 0.94296 0.97681 1.85949 1.43743 1.31263 1.63109 1.22894 0.96779 0.83774 0.97488 1.22648 0.92557 1.00391 0.98092 1.23031 0.95765 1.00502 0.98544 1.22796 0.96227 0.99267 0.98365 1.22884 0.96013 0.95221 1.01668 0.89922 0.86506 0.85344 0.84547 0.92726 0.92250 0.89673 0.90161 0.92331 0.89497 0.89792 0.90142 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.40 10.96 21.83 0.24 -43.16 16 2 C 0.04 1.79 5.14 85.25 0.44 2.23 16 3 Si 0.98 38.94 29.59 68.60 2.03 40.97 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 6 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.47 -26.15 8.72 23.39 0.20 -25.94 16 8 H 0.08 4.15 7.65 -2.91 -0.02 4.13 16 9 C 0.07 3.80 5.58 -21.20 -0.12 3.68 16 10 C -0.16 -8.68 8.45 22.72 0.19 -8.49 16 11 C -0.04 -1.80 6.31 22.28 0.14 -1.66 16 12 Cl -0.10 -4.16 28.94 -2.72 -0.08 -4.24 16 13 C -0.20 -8.62 9.82 22.45 0.22 -8.40 16 14 C -0.17 -7.23 9.03 22.32 0.20 -7.03 16 15 C 0.01 0.64 6.72 23.06 0.15 0.79 16 16 O -0.33 -14.71 9.42 -89.70 -0.85 -15.56 16 17 C 0.07 2.17 4.57 71.98 0.33 2.50 16 18 C -0.12 -3.19 4.00 -10.27 -0.04 -3.24 16 19 C -0.14 -3.42 7.65 31.18 0.24 -3.19 16 20 C -0.13 -2.31 8.09 31.18 0.25 -2.06 16 21 C -0.12 -2.30 7.65 31.12 0.24 -2.06 16 22 H 0.29 13.89 8.30 -92.70 -0.77 13.12 16 23 H 0.12 6.54 6.17 -2.91 -0.02 6.52 16 24 H 0.13 4.76 8.06 -2.91 -0.02 4.73 16 25 H 0.14 4.82 6.29 -2.91 -0.02 4.80 16 26 H 0.05 1.71 7.66 -2.39 -0.02 1.69 16 27 H 0.06 1.81 7.39 -2.39 -0.02 1.79 16 28 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.08 1.93 7.92 -2.38 -0.02 1.91 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 1.57 8.10 -2.39 -0.02 1.55 16 Total: -1.00 -59.53 300.20 4.89 -54.64 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 1.10 Total: 20.21 kcal Atomic # 6 Polarization: -55.31 SS G_CDS: 2.45 Total: -52.86 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.24 Total: -43.16 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.85 Total: -15.56 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Atomic # 17 Polarization: -4.16 SS G_CDS: -0.08 Total: -4.24 kcal Total: -59.53 4.89 -54.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216967972.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.443 kcal (2) G-P(sol) polarization free energy of solvation -59.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds