Wall clock time and date at job start Mon Mar 30 2020 06:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40421 * 119.68855 * 2 1 4 4 C 1.41151 * 120.41751 * 359.97438 * 3 2 1 5 5 H 1.08000 * 120.00077 * 37.62814 * 4 3 2 6 6 C 1.39933 * 120.00114 * 217.62979 * 4 3 2 7 7 N 1.30868 * 119.99924 * 24.43806 * 6 4 3 8 8 Si 1.86805 * 120.00201 * 204.44199 * 6 4 3 9 9 H 1.48506 * 109.46938 * 270.00110 * 8 6 4 10 10 H 1.48498 * 109.46986 * 29.99599 * 8 6 4 11 11 H 1.48496 * 109.47198 * 149.99843 * 8 6 4 12 12 C 1.41294 * 119.16585 * 179.72114 * 3 2 1 13 13 O 1.35665 * 120.39832 * 180.44856 * 12 3 2 14 14 C 1.38227 * 119.20421 * 0.42992 * 12 3 2 15 15 Cl 1.73593 * 119.64947 * 179.87021 * 14 12 3 16 16 C 1.39116 * 120.70859 * 359.84765 * 14 12 3 17 17 C 1.37209 * 119.68572 * 180.23696 * 2 1 3 18 18 C 1.50720 * 117.41035 * 359.64987 * 17 2 1 19 19 C 1.52700 * 110.60961 * 162.67796 * 18 17 2 20 20 C 1.53317 * 108.37739 * 51.24624 * 19 18 17 21 21 C 1.50733 * 117.43340 * 179.73076 * 16 14 12 22 22 H 1.08993 * 109.47129 * 90.00504 * 1 2 3 23 23 H 1.09002 * 109.47150 * 210.00622 * 1 2 3 24 24 H 1.08995 * 109.46995 * 329.99984 * 1 2 3 25 25 H 0.96993 * 119.99771 * 5.57573 * 7 6 4 26 26 H 0.96706 * 113.99760 * 90.72705 * 13 12 3 27 27 H 1.08998 * 109.24664 * 42.38473 * 18 17 2 28 28 H 1.09003 * 109.21986 * 282.94585 * 18 17 2 29 29 H 1.08999 * 109.68459 * 291.52269 * 19 18 17 30 30 H 1.09004 * 109.68689 * 170.96721 * 19 18 17 31 31 H 1.08994 * 109.68343 * 170.14231 * 20 19 18 32 32 H 1.08995 * 109.71123 * 49.59612 * 20 19 18 33 33 H 1.09005 * 109.25060 * 282.73245 * 21 16 14 34 34 H 1.08998 * 109.25002 * 42.18610 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.2199 0.0000 4 6 1.4990 2.4436 -0.0005 5 1 0.5875 2.5427 0.5701 6 6 1.9827 3.5283 -0.7405 7 7 2.7605 3.3217 -1.7725 8 14 1.5181 5.2714 -0.2552 9 1 0.2717 5.6658 -0.9597 10 1 1.2986 5.3349 1.2121 11 1 2.6146 6.1991 -0.6323 12 6 3.6154 1.2070 0.0060 13 8 4.3125 2.3708 0.0153 14 6 4.2788 -0.0057 0.0027 15 17 6.0145 -0.0350 0.0066 16 6 3.5705 -1.2030 -0.0033 17 6 2.1866 -1.1920 -0.0049 18 6 1.3678 -2.4574 -0.0020 19 6 2.2191 -3.6494 -0.4334 20 6 3.4975 -3.6619 0.4129 21 6 4.3683 -2.4818 -0.0129 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8899 0.5138 25 1 2.9364 2.4166 -2.0736 26 1 4.5204 2.6977 0.9014 27 1 0.5308 -2.3454 -0.6911 28 1 0.9846 -2.6345 1.0030 29 1 2.4778 -3.5534 -1.4879 30 1 1.6642 -4.5739 -0.2737 31 1 4.0374 -4.5944 0.2487 32 1 3.2410 -3.5669 1.4679 33 1 4.7489 -2.6604 -1.0186 34 1 5.2069 -2.3874 0.6770 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216967989.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:26 Heat of formation + Delta-G solvation = -77.754507 kcal Electronic energy + Delta-G solvation = -18587.432271 eV Core-core repulsion = 15701.825790 eV Total energy + Delta-G solvation = -2885.606482 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.94008 -38.58487 -37.36284 -36.27399 -34.90364 -33.67063 -30.87082 -29.97318 -27.66992 -26.44347 -24.05892 -23.22832 -21.50985 -20.64886 -19.48061 -18.01116 -17.40826 -16.54769 -16.12179 -15.63145 -15.35373 -14.93231 -14.78802 -14.34641 -14.17995 -13.95380 -13.63802 -13.39318 -13.35521 -12.97649 -12.68273 -12.57115 -12.41095 -11.97242 -11.79047 -11.64960 -11.60812 -11.47307 -11.33980 -11.18844 -10.85992 -10.43819 -9.26463 -8.99689 -8.90987 -6.33894 0.61734 0.79507 1.43982 1.53251 1.63545 1.79655 2.39719 2.68168 3.29888 3.72449 3.96770 4.06666 4.10761 4.43578 4.46157 4.60397 4.67461 4.72411 4.78232 4.89876 4.97151 5.03790 5.10220 5.13047 5.15927 5.25971 5.29880 5.46140 5.51418 5.59973 5.78355 5.87195 5.96342 6.21152 6.28420 6.70396 6.98655 7.26823 8.22625 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022108 B = 0.008297 C = 0.006296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.183373 B = 3373.775644 C = 4446.510126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.195 4.195 3 C 0.058 3.942 4 C -0.551 4.551 5 H 0.076 0.924 6 C 0.015 3.985 7 N -0.794 5.794 8 Si 1.114 2.886 9 H -0.266 1.266 10 H -0.264 1.264 11 H -0.279 1.279 12 C -0.013 4.013 13 O -0.477 6.477 14 C -0.038 4.038 15 Cl -0.091 7.091 16 C -0.183 4.183 17 C -0.048 4.048 18 C -0.071 4.071 19 C -0.113 4.113 20 C -0.110 4.110 21 C -0.058 4.058 22 H 0.048 0.952 23 H 0.073 0.927 24 H 0.049 0.951 25 H 0.271 0.729 26 H 0.363 0.637 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.328 -9.017 4.350 10.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.196 4.196 3 C 0.055 3.945 4 C -0.579 4.579 5 H 0.094 0.906 6 C -0.203 4.203 7 N -0.416 5.416 8 Si 0.933 3.067 9 H -0.192 1.192 10 H -0.189 1.189 11 H -0.204 1.204 12 C -0.059 4.059 13 O -0.284 6.284 14 C -0.065 4.065 15 Cl -0.063 7.063 16 C -0.185 4.185 17 C -0.049 4.049 18 C -0.108 4.108 19 C -0.150 4.150 20 C -0.147 4.147 21 C -0.095 4.095 22 H 0.067 0.933 23 H 0.091 0.909 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.216 0.784 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.919 -7.501 3.300 8.247 hybrid contribution 0.360 -1.054 0.665 1.297 sum -0.559 -8.556 3.965 9.447 Atomic orbital electron populations 1.20428 0.91034 1.01443 1.00576 1.20043 0.96653 0.92031 1.10899 1.18024 0.90477 0.94303 0.91703 1.20363 1.10775 0.96977 1.29760 0.90640 1.27992 0.91521 1.08855 0.91933 1.70443 1.25824 1.26196 1.19122 0.83030 0.77012 0.69460 0.77163 1.19154 1.18886 1.20446 1.18486 0.90201 0.83933 1.13313 1.84934 1.74575 1.37729 1.31173 1.21478 0.82557 0.94804 1.07642 1.98241 1.12062 1.98869 1.97087 1.19150 0.92889 0.92998 1.13442 1.19217 0.91932 0.95110 0.98615 1.20491 0.97205 0.91042 1.02061 1.21529 0.96276 0.97794 0.99420 1.21501 0.96151 0.97268 0.99802 1.20217 0.97060 0.91515 1.00692 0.93280 0.90858 0.93175 0.91731 0.78385 0.90765 0.90139 0.92724 0.89120 0.89716 0.91902 0.92558 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.01 8.69 71.24 0.62 -2.39 16 2 C -0.19 -8.82 5.91 -19.57 -0.12 -8.94 16 3 C 0.06 2.99 4.98 -21.28 -0.11 2.89 16 4 C -0.55 -28.67 8.03 23.40 0.19 -28.49 16 5 H 0.08 3.83 6.66 -2.91 -0.02 3.81 16 6 C 0.02 0.79 4.27 85.25 0.36 1.15 16 7 N -0.79 -44.52 12.02 21.83 0.26 -44.26 16 8 Si 1.11 44.28 30.00 68.60 2.06 46.34 16 9 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 10 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 11 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 12 C -0.01 -0.65 5.68 23.02 0.13 -0.52 16 13 O -0.48 -23.95 9.95 -89.81 -0.89 -24.84 16 14 C -0.04 -1.73 6.32 22.48 0.14 -1.59 16 15 Cl -0.09 -3.66 26.75 -2.72 -0.07 -3.74 16 16 C -0.18 -7.54 5.77 -19.60 -0.11 -7.65 16 17 C -0.05 -1.94 5.71 -20.06 -0.11 -2.06 16 18 C -0.07 -2.13 4.40 29.75 0.13 -1.99 16 19 C -0.11 -2.80 5.97 30.60 0.18 -2.62 16 20 C -0.11 -2.79 5.97 30.60 0.18 -2.60 16 21 C -0.06 -1.89 4.98 29.76 0.15 -1.75 16 22 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.07 2.30 6.63 -2.39 -0.02 2.29 16 24 H 0.05 2.00 6.38 -2.39 -0.02 1.98 16 25 H 0.27 16.29 7.11 -92.71 -0.66 15.63 16 26 H 0.36 15.73 9.06 -74.05 -0.67 15.05 16 27 H 0.07 2.12 7.13 -2.39 -0.02 2.10 16 28 H 0.08 2.18 8.07 -2.39 -0.02 2.16 16 29 H 0.05 1.44 8.10 -2.39 -0.02 1.43 16 30 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 33 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.06 2.00 7.20 -2.39 -0.02 1.98 16 Total: -1.00 -60.33 283.72 3.56 -56.77 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.57 Total: 26.28 kcal Atomic # 6 Polarization: -58.19 SS G_CDS: 1.64 Total: -56.55 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.26 Total: -44.26 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.89 Total: -24.84 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.06 Total: 46.34 kcal Atomic # 17 Polarization: -3.66 SS G_CDS: -0.07 Total: -3.74 kcal Total: -60.33 3.56 -56.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216967989.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.988 kcal (2) G-P(sol) polarization free energy of solvation -60.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds