Wall clock time and date at job start Mon Mar 30 2020 06:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86804 * 120.00119 * 2 1 4 4 H 1.48495 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46965 * 299.99292 * 3 2 1 6 6 H 1.48501 * 109.47385 * 59.99376 * 3 2 1 7 7 C 1.39940 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00208 * 162.65781 * 7 2 1 9 9 C 1.41158 * 119.99786 * 342.66671 * 7 2 1 10 10 C 1.39991 * 120.48464 * 334.51268 * 9 7 2 11 11 C 1.37267 * 120.71803 * 180.73067 * 10 9 7 12 12 C 1.38010 * 120.29864 * 1.07109 * 11 10 9 13 13 C 1.39274 * 119.90086 * 357.91958 * 12 11 10 14 14 Cl 1.73602 * 119.60727 * 181.32488 * 13 12 11 15 15 C 1.38177 * 120.78073 * 1.30661 * 13 12 11 16 16 O 1.35660 * 120.39677 * 180.44667 * 15 13 12 17 17 C 1.50991 * 123.26973 * 177.64645 * 12 11 10 18 18 C 1.52744 * 111.53787 * 29.57970 * 17 12 11 19 19 C 1.52955 * 108.33787 * 268.35691 * 18 17 12 20 20 C 1.52527 * 109.73549 * 60.97047 * 19 18 17 21 21 C 1.50668 * 117.22268 * 181.41145 * 11 10 9 22 22 H 0.96999 * 119.99794 * 0.02562 * 1 2 3 23 23 H 1.08000 * 119.59330 * 0.76378 * 10 9 7 24 24 H 0.96705 * 114.00008 * 90.04710 * 16 15 13 25 25 H 1.09003 * 109.06032 * 269.06519 * 17 12 11 26 26 H 1.09004 * 109.05481 * 150.08816 * 17 12 11 27 27 H 1.08998 * 109.68771 * 28.06775 * 18 17 12 28 28 H 1.09001 * 109.69329 * 148.64166 * 18 17 12 29 29 H 1.08998 * 109.42317 * 181.05832 * 19 18 17 30 30 H 1.09002 * 109.42195 * 300.88969 * 19 18 17 31 31 H 1.09000 * 109.82067 * 152.61512 * 20 19 18 32 32 H 1.08999 * 109.82845 * 273.47734 * 20 19 18 33 33 H 1.09003 * 109.15870 * 109.96672 * 21 11 10 34 34 H 1.08996 * 109.11358 * 350.75898 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7027 1.3464 0.0006 5 1 1.8841 2.3963 -1.2126 6 1 1.8839 2.3966 1.2124 7 6 2.0084 -1.2119 0.0005 8 1 3.0515 -1.2333 -0.2782 9 6 1.3507 -2.4064 0.3653 10 6 0.2320 -2.3729 1.2063 11 6 -0.4022 -3.5328 1.5760 12 6 0.0697 -4.7540 1.1395 13 6 1.1682 -4.8087 0.2851 14 17 1.7342 -6.3470 -0.2869 15 6 1.8127 -3.6531 -0.1130 16 8 2.8764 -3.7148 -0.9527 17 6 -0.5437 -6.0724 1.5461 18 6 -2.0378 -5.9317 1.8307 19 6 -2.2180 -5.6352 3.3204 20 6 -1.5171 -4.3274 3.6737 21 6 -1.6176 -3.4030 2.4569 22 1 -0.4850 0.8401 -0.0004 23 1 -0.1356 -1.4238 1.5672 24 1 2.6412 -3.6677 -1.8895 25 1 -0.0432 -6.4363 2.4434 26 1 -0.4011 -6.7943 0.7419 27 1 -2.4484 -5.1122 1.2408 28 1 -2.5492 -6.8601 1.5765 29 1 -3.2807 -5.5498 3.5470 30 1 -1.7873 -6.4472 3.9063 31 1 -2.0072 -3.8651 4.5305 32 1 -0.4699 -4.5204 3.9069 33 1 -2.5059 -3.6644 1.8817 34 1 -1.7030 -2.3712 2.7976 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216968016.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:09 Heat of formation + Delta-G solvation = -53.983198 kcal Electronic energy + Delta-G solvation = -18337.944763 eV Core-core repulsion = 15453.369083 eV Total energy + Delta-G solvation = -2884.575680 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.18088 -37.11928 -35.56015 -34.87523 -33.46033 -31.68310 -29.86301 -28.15291 -26.13689 -24.12781 -23.17999 -21.07686 -19.72479 -19.17315 -17.29617 -16.63208 -15.81461 -15.03142 -14.79292 -14.46254 -13.74953 -13.74193 -13.12735 -12.79097 -12.74841 -12.50696 -11.92821 -11.68673 -11.41491 -11.36885 -11.16027 -11.01550 -10.54585 -10.47288 -10.42766 -10.26987 -10.13093 -9.91629 -9.71817 -9.55062 -9.16880 -9.05309 -7.40888 -7.22775 -6.89116 -4.47945 2.53102 2.59249 3.01178 3.04547 3.08265 3.23442 3.84473 4.36599 5.20230 5.23643 5.28105 5.35317 5.56885 5.70579 5.88288 6.02094 6.04836 6.13356 6.14358 6.24325 6.43629 6.54988 6.57366 6.67921 6.72520 6.84456 6.89869 7.01207 7.10392 7.18270 7.49644 7.69860 7.87781 8.04562 8.35234 8.63209 8.68419 9.01777 10.02011 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019154 B = 0.007859 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.486627 B = 3561.808840 C = 4831.001048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.443 4.443 8 H 0.087 0.913 9 C 0.099 3.901 10 C -0.155 4.155 11 C -0.053 4.053 12 C -0.180 4.180 13 C -0.019 4.019 14 Cl -0.113 7.113 15 C -0.010 4.010 16 O -0.484 6.484 17 C -0.058 4.058 18 C -0.123 4.123 19 C -0.116 4.116 20 C -0.115 4.115 21 C -0.075 4.075 22 H 0.282 0.718 23 H 0.125 0.875 24 H 0.359 0.641 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.776 -4.750 2.754 6.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.472 4.472 8 H 0.105 0.895 9 C 0.096 3.904 10 C -0.174 4.174 11 C -0.053 4.053 12 C -0.182 4.182 13 C -0.045 4.045 14 Cl -0.084 7.084 15 C -0.057 4.057 16 O -0.291 6.291 17 C -0.096 4.096 18 C -0.160 4.160 19 C -0.154 4.154 20 C -0.152 4.152 21 C -0.112 4.112 22 H 0.093 0.907 23 H 0.143 0.857 24 H 0.211 0.789 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.593 -4.764 3.217 6.779 hybrid contribution 0.153 0.715 -0.631 0.966 sum -3.440 -4.049 2.586 5.909 Atomic orbital electron populations 1.69831 1.07618 1.29502 1.34305 1.25983 0.94779 1.01592 0.92093 0.86200 0.81155 0.80477 0.78645 1.18185 1.19882 1.19585 1.19541 0.98309 0.90406 1.38943 0.89510 1.17611 0.91362 0.91035 0.90402 1.21066 0.99163 0.96928 1.00270 1.18823 0.96350 0.92034 0.98131 1.18626 0.99315 0.93970 1.06296 1.21206 0.97552 0.83534 1.02238 1.98239 1.89125 1.32310 1.88752 1.18171 0.95071 0.90851 1.01565 1.84752 1.30418 1.95743 1.18198 1.20272 0.94097 0.94915 1.00279 1.21719 0.97006 1.01126 0.96195 1.21579 0.99530 0.97673 0.96600 1.21523 1.00974 0.95474 0.97274 1.20622 0.96546 0.99039 0.94956 0.90664 0.85709 0.78882 0.92806 0.92116 0.90666 0.92891 0.92912 0.92686 0.92578 0.91632 0.91235 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.21 10.99 55.55 0.61 -18.60 16 2 C 0.07 1.78 5.14 -17.33 -0.09 1.69 16 3 Si 0.91 18.09 29.59 -169.99 -5.03 13.06 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.44 -11.40 8.72 -37.84 -0.33 -11.73 16 8 H 0.09 2.24 7.69 -52.49 -0.40 1.83 16 9 C 0.10 2.56 5.55 -106.97 -0.59 1.97 16 10 C -0.15 -3.79 8.16 -39.28 -0.32 -4.11 16 11 C -0.05 -1.14 5.11 -105.07 -0.54 -1.68 16 12 C -0.18 -3.83 5.54 -104.18 -0.58 -4.41 16 13 C -0.02 -0.42 6.32 -39.22 -0.25 -0.67 16 14 Cl -0.11 -2.22 26.39 -51.86 -1.37 -3.59 16 15 C -0.01 -0.25 6.73 -38.44 -0.26 -0.51 16 16 O -0.48 -11.06 12.28 -18.68 -0.23 -11.29 16 17 C -0.06 -1.04 4.83 -27.87 -0.13 -1.17 16 18 C -0.12 -1.87 5.62 -26.89 -0.15 -2.02 16 19 C -0.12 -1.59 5.62 -27.00 -0.15 -1.75 16 20 C -0.11 -1.76 5.76 -26.90 -0.15 -1.91 16 21 C -0.07 -1.33 5.16 -27.83 -0.14 -1.47 16 22 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 23 H 0.13 3.14 5.85 -52.49 -0.31 2.83 16 24 H 0.36 6.88 9.06 45.56 0.41 7.29 16 25 H 0.05 0.94 7.68 -51.93 -0.40 0.54 16 26 H 0.06 1.07 6.50 -51.93 -0.34 0.73 16 27 H 0.07 1.23 5.37 -51.93 -0.28 0.95 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.71 8.04 -51.93 -0.42 0.29 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.09 7.80 -51.93 -0.41 0.69 16 33 H 0.07 1.18 5.75 -51.93 -0.30 0.88 16 34 H 0.06 1.07 7.66 -51.93 -0.40 0.67 16 LS Contribution 282.97 15.07 4.26 4.26 Total: -1.00 -26.38 282.97 -8.68 -35.06 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -3.23 Total: 8.88 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -3.69 Total: -27.78 kcal Atomic # 7 Polarization: -19.21 SS G_CDS: 0.61 Total: -18.60 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -0.23 Total: -11.29 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -1.37 Total: -3.59 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -26.38 -8.68 -35.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216968016.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.927 kcal (2) G-P(sol) polarization free energy of solvation -26.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds