Wall clock time and date at job start Mon Mar 30 2020 06:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86804 * 120.00119 * 2 1 4 4 H 1.48495 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46965 * 299.99292 * 3 2 1 6 6 H 1.48501 * 109.47385 * 59.99376 * 3 2 1 7 7 C 1.39940 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00208 * 162.65781 * 7 2 1 9 9 C 1.41158 * 119.99786 * 342.66671 * 7 2 1 10 10 C 1.39991 * 120.48464 * 334.51268 * 9 7 2 11 11 C 1.37267 * 120.71803 * 180.73067 * 10 9 7 12 12 C 1.38010 * 120.29864 * 1.07109 * 11 10 9 13 13 C 1.39274 * 119.90086 * 357.91958 * 12 11 10 14 14 Cl 1.73602 * 119.60727 * 181.32488 * 13 12 11 15 15 C 1.38177 * 120.78073 * 1.30661 * 13 12 11 16 16 O 1.35660 * 120.39677 * 180.44667 * 15 13 12 17 17 C 1.50991 * 123.26973 * 177.64645 * 12 11 10 18 18 C 1.52744 * 111.53787 * 29.57970 * 17 12 11 19 19 C 1.52955 * 108.33787 * 268.35691 * 18 17 12 20 20 C 1.52527 * 109.73549 * 60.97047 * 19 18 17 21 21 C 1.50668 * 117.22268 * 181.41145 * 11 10 9 22 22 H 0.96999 * 119.99794 * 0.02562 * 1 2 3 23 23 H 1.08000 * 119.59330 * 0.76378 * 10 9 7 24 24 H 0.96705 * 114.00008 * 90.04710 * 16 15 13 25 25 H 1.09003 * 109.06032 * 269.06519 * 17 12 11 26 26 H 1.09004 * 109.05481 * 150.08816 * 17 12 11 27 27 H 1.08998 * 109.68771 * 28.06775 * 18 17 12 28 28 H 1.09001 * 109.69329 * 148.64166 * 18 17 12 29 29 H 1.08998 * 109.42317 * 181.05832 * 19 18 17 30 30 H 1.09002 * 109.42195 * 300.88969 * 19 18 17 31 31 H 1.09000 * 109.82067 * 152.61512 * 20 19 18 32 32 H 1.08999 * 109.82845 * 273.47734 * 20 19 18 33 33 H 1.09003 * 109.15870 * 109.96672 * 21 11 10 34 34 H 1.08996 * 109.11358 * 350.75898 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7027 1.3464 0.0006 5 1 1.8841 2.3963 -1.2126 6 1 1.8839 2.3966 1.2124 7 6 2.0084 -1.2119 0.0005 8 1 3.0515 -1.2333 -0.2782 9 6 1.3507 -2.4064 0.3653 10 6 0.2320 -2.3729 1.2063 11 6 -0.4022 -3.5328 1.5760 12 6 0.0697 -4.7540 1.1395 13 6 1.1682 -4.8087 0.2851 14 17 1.7342 -6.3470 -0.2869 15 6 1.8127 -3.6531 -0.1130 16 8 2.8764 -3.7148 -0.9527 17 6 -0.5437 -6.0724 1.5461 18 6 -2.0378 -5.9317 1.8307 19 6 -2.2180 -5.6352 3.3204 20 6 -1.5171 -4.3274 3.6737 21 6 -1.6176 -3.4030 2.4569 22 1 -0.4850 0.8401 -0.0004 23 1 -0.1356 -1.4238 1.5672 24 1 2.6412 -3.6677 -1.8895 25 1 -0.0432 -6.4363 2.4434 26 1 -0.4011 -6.7943 0.7419 27 1 -2.4484 -5.1122 1.2408 28 1 -2.5492 -6.8601 1.5765 29 1 -3.2807 -5.5498 3.5470 30 1 -1.7873 -6.4472 3.9063 31 1 -2.0072 -3.8651 4.5305 32 1 -0.4699 -4.5204 3.9069 33 1 -2.5059 -3.6644 1.8817 34 1 -1.7030 -2.3712 2.7976 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216968016.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:08 Heat of formation + Delta-G solvation = -67.923062 kcal Electronic energy + Delta-G solvation = -18338.549241 eV Core-core repulsion = 15453.369083 eV Total energy + Delta-G solvation = -2885.180158 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.81412 -38.71767 -37.25349 -36.58722 -35.15249 -33.18653 -31.55375 -29.76676 -27.79010 -25.62514 -24.71149 -22.84827 -21.41869 -20.45430 -19.08382 -18.37084 -17.46267 -16.62016 -16.30364 -16.15376 -15.40206 -15.22338 -14.56101 -14.41598 -14.31108 -13.93506 -13.39111 -13.36160 -13.08258 -12.90033 -12.77059 -12.68206 -12.10946 -11.98631 -11.88564 -11.72380 -11.55402 -11.36789 -11.29544 -11.02511 -10.87568 -10.75761 -9.21126 -9.00206 -8.67471 -6.37953 0.74983 0.80668 1.36879 1.44776 1.47760 1.53309 2.18631 2.58123 3.40530 3.80786 4.01061 4.06444 4.16697 4.29748 4.48426 4.62469 4.69272 4.74509 4.78623 5.00720 5.07409 5.14671 5.20067 5.24295 5.26318 5.33214 5.33897 5.50229 5.55374 5.64438 5.75852 5.90417 6.07014 6.23149 6.51376 6.79320 6.82128 7.24220 8.25576 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019154 B = 0.007859 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.486627 B = 3561.808840 C = 4831.001048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.040 3.960 3 Si 0.980 3.020 4 H -0.264 1.264 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.480 4.480 8 H 0.072 0.928 9 C 0.068 3.932 10 C -0.177 4.177 11 C -0.054 4.054 12 C -0.176 4.176 13 C -0.033 4.033 14 Cl -0.087 7.087 15 C -0.031 4.031 16 O -0.492 6.492 17 C -0.057 4.057 18 C -0.121 4.121 19 C -0.111 4.111 20 C -0.110 4.110 21 C -0.073 4.073 22 H 0.291 0.709 23 H 0.111 0.889 24 H 0.372 0.628 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.038 -5.732 3.679 8.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.176 4.176 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.188 1.188 6 H -0.186 1.186 7 C -0.509 4.509 8 H 0.090 0.910 9 C 0.065 3.935 10 C -0.196 4.196 11 C -0.054 4.054 12 C -0.178 4.178 13 C -0.060 4.060 14 Cl -0.059 7.059 15 C -0.077 4.077 16 O -0.300 6.300 17 C -0.094 4.094 18 C -0.158 4.158 19 C -0.149 4.149 20 C -0.148 4.148 21 C -0.110 4.110 22 H 0.102 0.898 23 H 0.128 0.872 24 H 0.226 0.774 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.866 -5.768 4.136 8.605 hybrid contribution 0.536 0.865 -0.946 1.390 sum -4.330 -4.902 3.190 7.277 Atomic orbital electron populations 1.69856 1.08710 1.30781 1.34622 1.26701 0.95523 1.04236 0.91188 0.85179 0.79240 0.76276 0.79192 1.18796 1.18753 1.18592 1.19609 0.97963 0.91844 1.41470 0.90951 1.17967 0.92371 0.91858 0.91270 1.21078 0.99812 0.97473 1.01268 1.19247 0.97074 0.91322 0.97763 1.19151 0.98426 0.95562 1.04672 1.21403 0.97776 0.84338 1.02476 1.98233 1.88931 1.30224 1.88477 1.18373 0.95638 0.91341 1.02369 1.84682 1.30455 1.95732 1.19131 1.20339 0.96013 0.92537 1.00524 1.21708 0.94866 1.01974 0.97238 1.21564 1.00947 0.96879 0.95485 1.21504 1.00550 0.96072 0.96667 1.20670 0.95044 0.99649 0.95634 0.89809 0.87156 0.77375 0.92039 0.91930 0.91999 0.90346 0.90470 0.91235 0.90235 0.93394 0.89950 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.80 10.99 21.83 0.24 -40.56 16 2 C 0.04 1.95 5.14 85.25 0.44 2.39 16 3 Si 0.98 37.79 29.59 68.60 2.03 39.82 16 4 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 5 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 6 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.48 -25.86 8.72 23.40 0.20 -25.65 16 8 H 0.07 3.95 7.69 -2.91 -0.02 3.92 16 9 C 0.07 3.68 5.55 -21.39 -0.12 3.56 16 10 C -0.18 -8.96 8.16 22.47 0.18 -8.77 16 11 C -0.05 -2.33 5.11 -20.16 -0.10 -2.43 16 12 C -0.18 -7.39 5.54 -19.58 -0.11 -7.49 16 13 C -0.03 -1.50 6.32 22.50 0.14 -1.35 16 14 Cl -0.09 -3.35 26.39 -2.72 -0.07 -3.42 16 15 C -0.03 -1.55 6.73 23.01 0.15 -1.40 16 16 O -0.49 -23.09 12.28 -89.76 -1.10 -24.19 16 17 C -0.06 -1.89 4.83 29.85 0.14 -1.74 16 18 C -0.12 -3.25 5.62 30.49 0.17 -3.08 16 19 C -0.11 -2.59 5.62 30.42 0.17 -2.42 16 20 C -0.11 -3.08 5.76 30.48 0.18 -2.91 16 21 C -0.07 -2.52 5.16 29.88 0.15 -2.36 16 22 H 0.29 13.07 8.30 -92.71 -0.77 12.30 16 23 H 0.11 5.81 5.85 -2.91 -0.02 5.79 16 24 H 0.37 14.74 9.06 -74.05 -0.67 14.07 16 25 H 0.06 1.97 7.68 -2.39 -0.02 1.95 16 26 H 0.06 2.04 6.50 -2.39 -0.02 2.03 16 27 H 0.06 1.85 5.37 -2.39 -0.01 1.84 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.47 8.04 -2.39 -0.02 1.45 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.05 1.50 7.80 -2.39 -0.02 1.49 16 33 H 0.08 2.65 5.75 -2.39 -0.01 2.63 16 34 H 0.05 1.89 7.66 -2.39 -0.02 1.87 16 Total: -1.00 -58.19 282.97 3.17 -55.02 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.47 Total: 27.00 kcal Atomic # 6 Polarization: -55.27 SS G_CDS: 1.61 Total: -53.66 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.24 Total: -40.56 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -1.10 Total: -24.19 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Atomic # 17 Polarization: -3.35 SS G_CDS: -0.07 Total: -3.42 kcal Total: -58.19 3.17 -55.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216968016.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.905 kcal (2) G-P(sol) polarization free energy of solvation -58.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds