Wall clock time and date at job start Mon Mar 30 2020 07:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35670 * 117.00260 * 2 1 4 4 C 1.41324 * 120.40081 * 269.97820 * 3 2 1 5 5 C 1.41168 * 120.41214 * 0.21038 * 4 3 2 6 6 H 1.07999 * 120.00039 * 334.65751 * 5 4 3 7 7 C 1.39937 * 119.99915 * 154.65875 * 5 4 3 8 8 N 1.30869 * 119.99748 * 342.94987 * 7 5 4 9 9 Si 1.86801 * 119.99894 * 162.95082 * 7 5 4 10 10 H 1.48500 * 109.47112 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.46826 * 120.00045 * 9 7 5 12 12 H 1.48500 * 109.46783 * 240.00104 * 9 7 5 13 13 C 1.40386 * 119.17335 * 180.34848 * 4 3 2 14 14 C 1.37242 * 120.62128 * 359.62540 * 13 4 3 15 15 C 1.38355 * 120.13846 * 0.13009 * 14 13 4 16 16 C 1.38186 * 120.40262 * 89.99480 * 3 2 1 17 17 Cl 1.73594 * 119.64384 * 359.91092 * 16 3 2 18 18 C 1.50743 * 122.41544 * 180.23766 * 15 14 13 19 19 C 1.52711 * 110.60307 * 342.27038 * 18 15 14 20 20 C 1.53320 * 108.37005 * 51.28791 * 19 18 15 21 21 C 1.50717 * 117.40232 * 179.86284 * 14 13 4 22 22 H 1.08997 * 109.46844 * 60.00333 * 1 2 3 23 23 H 1.08994 * 109.46658 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47045 * 300.00587 * 1 2 3 25 25 H 0.97001 * 119.99292 * 180.02562 * 8 7 5 26 26 H 1.07994 * 119.69025 * 179.97438 * 13 4 3 27 27 H 1.09000 * 109.24849 * 102.55737 * 18 15 14 28 28 H 1.08990 * 109.24932 * 221.97831 * 18 15 14 29 29 H 1.09002 * 109.68183 * 171.01126 * 19 18 15 30 30 H 1.08998 * 109.68108 * 291.57071 * 19 18 15 31 31 H 1.09000 * 109.68245 * 49.57193 * 20 19 18 32 32 H 1.09000 * 109.68365 * 170.09046 * 20 19 18 33 33 H 1.09001 * 109.25170 * 282.92861 * 21 14 13 34 34 H 1.09005 * 109.25129 * 42.34099 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 2.3701 1.8458 -1.2189 5 6 2.0540 1.2342 -2.4514 6 1 1.9526 0.1607 -2.5112 7 6 1.8720 2.0191 -3.5956 8 7 1.6620 3.3056 -3.4799 9 14 1.9289 1.2303 -5.2879 10 1 2.1794 -0.2266 -5.1468 11 1 0.6319 1.4455 -5.9781 12 1 3.0214 1.8451 -6.0840 13 6 3.0140 3.0929 -1.1889 14 6 3.3190 3.6935 0.0069 15 6 2.9954 3.0711 1.1994 16 6 2.3624 1.8319 1.1918 17 17 1.9667 1.0608 2.6959 18 6 3.3015 3.6863 2.5411 19 6 4.3512 4.7865 2.4008 20 6 3.8978 5.7491 1.2969 21 6 4.0131 5.0303 -0.0455 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.5355 3.8495 -4.2731 26 1 3.2667 3.5869 -2.1153 27 1 2.3887 4.1116 2.9580 28 1 3.6772 2.9147 3.2129 29 1 4.4453 5.3265 3.3431 30 1 5.3113 4.3458 2.1322 31 1 2.8623 6.0428 1.4685 32 1 4.5350 6.6335 1.2964 33 1 5.0662 4.8794 -0.2831 34 1 3.5546 5.6432 -0.8217 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216968036.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:17 Heat of formation + Delta-G solvation = -52.887798 kcal Electronic energy + Delta-G solvation = -18359.393878 eV Core-core repulsion = 15474.865698 eV Total energy + Delta-G solvation = -2884.528180 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.03380 -37.20558 -35.54723 -34.91336 -33.13368 -31.16878 -29.42002 -27.81011 -25.83056 -25.32616 -22.42555 -21.48335 -20.94192 -18.84802 -17.23962 -16.07784 -15.78363 -14.93976 -14.57960 -14.37654 -13.97581 -13.54502 -13.27245 -12.93965 -12.76874 -12.31991 -12.15017 -11.88558 -11.56867 -11.27385 -11.18813 -10.97997 -10.91886 -10.53680 -10.36595 -10.35581 -10.08710 -9.88106 -9.76988 -9.46710 -9.18612 -8.68568 -7.40376 -7.23133 -6.89768 -4.48142 2.49432 2.57645 3.00608 3.04245 3.07637 3.23747 3.83680 4.33127 4.90329 5.34089 5.39669 5.40130 5.49388 5.92152 6.01670 6.14288 6.14780 6.17604 6.22483 6.27933 6.40312 6.43086 6.48170 6.53299 6.60345 6.80463 6.87417 6.93406 7.09689 7.12796 7.45787 7.67676 7.86366 8.03786 8.29636 8.58508 8.67646 8.96111 10.00971 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018191 B = 0.008551 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.852809 B = 3273.870677 C = 4625.605787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.319 6.319 3 C -0.022 4.022 4 C 0.107 3.893 5 C -0.439 4.439 6 H 0.087 0.913 7 C 0.074 3.926 8 N -0.786 5.786 9 Si 0.911 3.089 10 H -0.258 1.258 11 H -0.273 1.273 12 H -0.270 1.270 13 C -0.156 4.156 14 C -0.052 4.052 15 C -0.186 4.186 16 C -0.007 4.007 17 Cl -0.112 7.112 18 C -0.057 4.057 19 C -0.114 4.114 20 C -0.115 4.115 21 C -0.071 4.071 22 H 0.043 0.957 23 H 0.072 0.928 24 H 0.029 0.971 25 H 0.283 0.717 26 H 0.125 0.875 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.311 2.329 4.358 5.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.235 6.235 3 C -0.068 4.068 4 C 0.103 3.897 5 C -0.468 4.468 6 H 0.105 0.895 7 C -0.145 4.145 8 N -0.411 5.411 9 Si 0.735 3.265 10 H -0.181 1.181 11 H -0.199 1.199 12 H -0.195 1.195 13 C -0.175 4.175 14 C -0.053 4.053 15 C -0.188 4.188 16 C -0.034 4.034 17 Cl -0.084 7.084 18 C -0.094 4.094 19 C -0.152 4.152 20 C -0.153 4.153 21 C -0.108 4.108 22 H 0.062 0.938 23 H 0.090 0.910 24 H 0.048 0.952 25 H 0.094 0.906 26 H 0.143 0.857 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.294 2.290 4.341 5.075 hybrid contribution -0.392 -0.168 -0.716 0.834 sum 0.902 2.121 3.624 4.295 Atomic orbital electron populations 1.22753 0.82481 1.00751 0.99780 1.85957 1.17825 1.25618 1.94098 1.18306 1.07002 0.90933 0.90514 1.17657 0.89590 0.91171 0.91263 1.19555 1.40180 0.95508 0.91533 0.89471 1.25992 0.92105 0.94616 1.01788 1.69838 1.32609 1.06447 1.32202 0.86204 0.78688 0.80928 0.80711 1.18115 1.19876 1.19540 1.21065 1.02135 0.97801 0.96511 1.18921 0.99031 0.95103 0.92243 1.18580 1.11032 0.95018 0.94126 1.21080 1.04325 0.94098 0.83886 1.98241 1.93084 1.81955 1.35097 1.20137 0.97737 0.96815 0.94679 1.21493 0.99047 0.96809 0.97815 1.21501 1.01042 0.97304 0.95425 1.20355 0.99504 0.93985 0.96936 0.93842 0.90977 0.95220 0.90636 0.85685 0.92792 0.92201 0.92753 0.92136 0.92081 0.92684 0.91962 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 11.13 101.05 1.12 1.88 16 2 O -0.32 -7.58 9.19 -18.71 -0.17 -7.75 16 3 C -0.02 -0.55 5.74 -38.43 -0.22 -0.77 16 4 C 0.11 2.77 5.57 -106.80 -0.59 2.17 16 5 C -0.44 -11.30 8.73 -37.83 -0.33 -11.63 16 6 H 0.09 2.25 7.67 -52.49 -0.40 1.85 16 7 C 0.07 1.77 5.15 -17.33 -0.09 1.68 16 8 N -0.79 -19.18 10.98 55.55 0.61 -18.57 16 9 Si 0.91 18.05 29.59 -169.99 -5.03 13.02 16 10 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 11 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 12 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 13 C -0.16 -3.83 8.19 -39.14 -0.32 -4.15 16 14 C -0.05 -1.15 5.71 -104.93 -0.60 -1.75 16 15 C -0.19 -4.03 5.77 -104.22 -0.60 -4.63 16 16 C -0.01 -0.17 6.32 -39.26 -0.25 -0.41 16 17 Cl -0.11 -2.25 26.74 -51.86 -1.39 -3.64 16 18 C -0.06 -1.02 4.98 -28.01 -0.14 -1.16 16 19 C -0.11 -1.75 5.97 -26.71 -0.16 -1.91 16 20 C -0.12 -1.77 5.97 -26.72 -0.16 -1.93 16 21 C -0.07 -1.27 5.64 -28.02 -0.16 -1.43 16 22 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 23 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 26 H 0.13 3.14 6.15 -52.49 -0.32 2.82 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 1.06 7.20 -51.93 -0.37 0.68 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 31 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 LS Contribution 293.30 15.07 4.42 4.42 Total: -1.00 -26.34 293.30 -8.51 -34.85 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.46 Total: 1.72 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -2.50 Total: -24.04 kcal Atomic # 7 Polarization: -19.18 SS G_CDS: 0.61 Total: -18.57 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.17 Total: -7.75 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -1.39 Total: -3.64 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -26.34 -8.51 -34.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216968036.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.035 kcal (2) G-P(sol) polarization free energy of solvation -26.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds