Wall clock time and date at job start Mon Mar 30 2020 07:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35670 * 117.00260 * 2 1 4 4 C 1.41324 * 120.40081 * 269.97820 * 3 2 1 5 5 C 1.41168 * 120.41214 * 0.21038 * 4 3 2 6 6 H 1.07999 * 120.00039 * 334.65751 * 5 4 3 7 7 C 1.39937 * 119.99915 * 154.65875 * 5 4 3 8 8 N 1.30869 * 119.99748 * 342.94987 * 7 5 4 9 9 Si 1.86801 * 119.99894 * 162.95082 * 7 5 4 10 10 H 1.48500 * 109.47112 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.46826 * 120.00045 * 9 7 5 12 12 H 1.48500 * 109.46783 * 240.00104 * 9 7 5 13 13 C 1.40386 * 119.17335 * 180.34848 * 4 3 2 14 14 C 1.37242 * 120.62128 * 359.62540 * 13 4 3 15 15 C 1.38355 * 120.13846 * 0.13009 * 14 13 4 16 16 C 1.38186 * 120.40262 * 89.99480 * 3 2 1 17 17 Cl 1.73594 * 119.64384 * 359.91092 * 16 3 2 18 18 C 1.50743 * 122.41544 * 180.23766 * 15 14 13 19 19 C 1.52711 * 110.60307 * 342.27038 * 18 15 14 20 20 C 1.53320 * 108.37005 * 51.28791 * 19 18 15 21 21 C 1.50717 * 117.40232 * 179.86284 * 14 13 4 22 22 H 1.08997 * 109.46844 * 60.00333 * 1 2 3 23 23 H 1.08994 * 109.46658 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47045 * 300.00587 * 1 2 3 25 25 H 0.97001 * 119.99292 * 180.02562 * 8 7 5 26 26 H 1.07994 * 119.69025 * 179.97438 * 13 4 3 27 27 H 1.09000 * 109.24849 * 102.55737 * 18 15 14 28 28 H 1.08990 * 109.24932 * 221.97831 * 18 15 14 29 29 H 1.09002 * 109.68183 * 171.01126 * 19 18 15 30 30 H 1.08998 * 109.68108 * 291.57071 * 19 18 15 31 31 H 1.09000 * 109.68245 * 49.57193 * 20 19 18 32 32 H 1.09000 * 109.68365 * 170.09046 * 20 19 18 33 33 H 1.09001 * 109.25170 * 282.92861 * 21 14 13 34 34 H 1.09005 * 109.25129 * 42.34099 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 2.3701 1.8458 -1.2189 5 6 2.0540 1.2342 -2.4514 6 1 1.9526 0.1607 -2.5112 7 6 1.8720 2.0191 -3.5956 8 7 1.6620 3.3056 -3.4799 9 14 1.9289 1.2303 -5.2879 10 1 2.1794 -0.2266 -5.1468 11 1 0.6319 1.4455 -5.9781 12 1 3.0214 1.8451 -6.0840 13 6 3.0140 3.0929 -1.1889 14 6 3.3190 3.6935 0.0069 15 6 2.9954 3.0711 1.1994 16 6 2.3624 1.8319 1.1918 17 17 1.9667 1.0608 2.6959 18 6 3.3015 3.6863 2.5411 19 6 4.3512 4.7865 2.4008 20 6 3.8978 5.7491 1.2969 21 6 4.0131 5.0303 -0.0455 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.5355 3.8495 -4.2731 26 1 3.2667 3.5869 -2.1153 27 1 2.3887 4.1116 2.9580 28 1 3.6772 2.9147 3.2129 29 1 4.4453 5.3265 3.3431 30 1 5.3113 4.3458 2.1322 31 1 2.8623 6.0428 1.4685 32 1 4.5350 6.6335 1.2964 33 1 5.0662 4.8794 -0.2831 34 1 3.5546 5.6432 -0.8217 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216968036.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:15 Heat of formation + Delta-G solvation = -65.037162 kcal Electronic energy + Delta-G solvation = -18359.920714 eV Core-core repulsion = 15474.865698 eV Total energy + Delta-G solvation = -2885.055016 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.73843 -38.86002 -37.24857 -36.60408 -34.81984 -32.74507 -31.12763 -29.46762 -27.49013 -27.03350 -23.98477 -23.04771 -22.66632 -20.40168 -19.04937 -17.82265 -17.47699 -16.62328 -16.20363 -16.10188 -15.43573 -15.14240 -14.66513 -14.63485 -14.40866 -13.88747 -13.62768 -13.49866 -13.25350 -12.88164 -12.72249 -12.57984 -12.57769 -12.20654 -11.96762 -11.69975 -11.67283 -11.51105 -11.21129 -11.05870 -10.92981 -10.45089 -9.21332 -9.01343 -8.68030 -6.37748 0.69566 0.80047 1.36502 1.44203 1.47227 1.53010 2.18155 2.55136 3.13834 3.62620 4.03623 4.07994 4.15092 4.45402 4.52640 4.54819 4.66736 4.76827 4.78765 4.83128 4.85889 4.95506 5.08974 5.12341 5.18217 5.19356 5.29645 5.33822 5.43238 5.55525 5.71124 5.88911 6.06395 6.21969 6.45333 6.73080 6.81449 7.13440 8.24844 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018191 B = 0.008551 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.852809 B = 3273.870677 C = 4625.605787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.335 6.335 3 C -0.042 4.042 4 C 0.076 3.924 5 C -0.473 4.473 6 H 0.072 0.928 7 C 0.039 3.961 8 N -0.813 5.813 9 Si 0.979 3.021 10 H -0.263 1.263 11 H -0.264 1.264 12 H -0.260 1.260 13 C -0.177 4.177 14 C -0.057 4.057 15 C -0.184 4.184 16 C -0.024 4.024 17 Cl -0.088 7.088 18 C -0.057 4.057 19 C -0.110 4.110 20 C -0.110 4.110 21 C -0.071 4.071 22 H 0.026 0.974 23 H 0.106 0.894 24 H 0.035 0.965 25 H 0.291 0.709 26 H 0.112 0.888 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.861 3.280 5.327 6.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.252 6.252 3 C -0.087 4.087 4 C 0.072 3.928 5 C -0.502 4.502 6 H 0.090 0.910 7 C -0.177 4.177 8 N -0.439 5.439 9 Si 0.800 3.200 10 H -0.186 1.186 11 H -0.188 1.188 12 H -0.185 1.185 13 C -0.197 4.197 14 C -0.057 4.057 15 C -0.186 4.186 16 C -0.051 4.051 17 Cl -0.059 7.059 18 C -0.094 4.094 19 C -0.147 4.147 20 C -0.147 4.147 21 C -0.108 4.108 22 H 0.045 0.955 23 H 0.124 0.876 24 H 0.053 0.947 25 H 0.102 0.898 26 H 0.130 0.870 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.841 3.249 5.332 6.510 hybrid contribution -0.592 -0.481 -0.869 1.156 sum 1.249 2.768 4.462 5.398 Atomic orbital electron populations 1.22882 0.80724 1.02815 0.99173 1.85886 1.19558 1.25541 1.94174 1.18542 1.07787 0.91322 0.91094 1.18017 0.90470 0.92227 0.92038 1.19598 1.42698 0.94997 0.92885 0.90971 1.26712 0.91154 0.95007 1.04817 1.69863 1.32940 1.07479 1.33585 0.85192 0.79194 0.79513 0.76102 1.18643 1.18835 1.18468 1.21087 1.03450 0.97951 0.97179 1.19395 0.98203 0.96636 0.91485 1.19132 1.09105 0.94453 0.95939 1.21290 1.04430 0.94765 0.84582 1.98232 1.92909 1.81633 1.33127 1.20218 0.99111 0.97828 0.92216 1.21504 0.97833 0.95987 0.99397 1.21499 1.01644 0.98131 0.93441 1.20421 0.99500 0.91954 0.98908 0.95524 0.87582 0.94669 0.89776 0.86996 0.92114 0.91795 0.89466 0.92091 0.92520 0.89373 0.90758 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 11.13 113.37 1.26 2.82 16 2 O -0.33 -16.28 9.19 -89.87 -0.83 -17.10 16 3 C -0.04 -2.15 5.74 23.02 0.13 -2.02 16 4 C 0.08 4.09 5.57 -21.28 -0.12 3.97 16 5 C -0.47 -25.48 8.73 23.40 0.20 -25.28 16 6 H 0.07 3.94 7.67 -2.91 -0.02 3.92 16 7 C 0.04 1.93 5.15 85.25 0.44 2.37 16 8 N -0.81 -40.78 10.98 21.83 0.24 -40.54 16 9 Si 0.98 37.67 29.59 68.60 2.03 39.70 16 10 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 11 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 12 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 13 C -0.18 -9.02 8.19 22.56 0.18 -8.83 16 14 C -0.06 -2.49 5.71 -20.07 -0.11 -2.61 16 15 C -0.18 -7.87 5.77 -19.60 -0.11 -7.99 16 16 C -0.02 -1.10 6.32 22.48 0.14 -0.96 16 17 Cl -0.09 -3.43 26.74 -2.72 -0.07 -3.50 16 18 C -0.06 -1.89 4.98 29.77 0.15 -1.75 16 19 C -0.11 -2.95 5.97 30.61 0.18 -2.77 16 20 C -0.11 -3.01 5.97 30.60 0.18 -2.82 16 21 C -0.07 -2.44 5.64 29.76 0.17 -2.28 16 22 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 26 H 0.11 5.88 6.15 -2.91 -0.02 5.86 16 27 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.06 2.09 7.20 -2.39 -0.02 2.07 16 29 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.06 1.65 8.09 -2.39 -0.02 1.63 16 31 H 0.06 1.61 8.09 -2.39 -0.02 1.59 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 33 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.06 2.21 8.12 -2.38 -0.02 2.20 16 Total: -1.00 -58.48 293.30 5.17 -53.31 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 1.10 Total: 16.26 kcal Atomic # 6 Polarization: -50.82 SS G_CDS: 2.70 Total: -48.12 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.24 Total: -40.54 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.83 Total: -17.10 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.70 kcal Atomic # 17 Polarization: -3.43 SS G_CDS: -0.07 Total: -3.50 kcal Total: -58.48 5.17 -53.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216968036.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.727 kcal (2) G-P(sol) polarization free energy of solvation -58.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds