Wall clock time and date at job start Mon Mar 30 2020 07:50:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42908 * 1
3 3 C 1.35669 * 116.99947 * 2 1
4 4 C 1.38560 * 120.41702 * 275.14014 * 3 2 1
5 5 Cl 1.73601 * 120.10885 * 0.09594 * 4 3 2
6 6 C 1.38043 * 119.78969 * 180.29182 * 4 3 2
7 7 C 1.39607 * 121.27784 * 359.58678 * 6 4 3
8 8 C 1.35951 * 120.03000 * 0.13506 * 7 6 4
9 9 C 1.40976 * 120.41515 * 95.15325 * 3 2 1
10 10 C 1.41164 * 119.97839 * 0.09140 * 9 3 2
11 11 H 1.07998 * 119.99482 * 217.27451 * 10 9 3
12 12 C 1.39926 * 119.99881 * 37.27506 * 10 9 3
13 13 N 1.30876 * 119.99717 * 212.46769 * 12 10 9
14 14 Si 1.86798 * 120.00290 * 32.47559 * 12 10 9
15 15 H 1.48498 * 109.47521 * 92.04910 * 14 12 10
16 16 H 1.48501 * 109.47067 * 212.04518 * 14 12 10
17 17 H 1.48499 * 109.47006 * 332.04301 * 14 12 10
18 18 C 1.50639 * 122.82412 * 180.32863 * 8 7 6
19 19 C 1.52714 * 110.67754 * 342.34212 * 18 8 7
20 20 C 1.53354 * 108.24446 * 50.85589 * 19 18 8
21 21 C 1.50727 * 117.34182 * 179.86530 * 7 6 4
22 22 H 1.08998 * 109.46925 * 184.82338 * 1 2 3
23 23 H 1.08993 * 109.46701 * 304.82505 * 1 2 3
24 24 H 1.08998 * 109.46687 * 64.82871 * 1 2 3
25 25 H 1.07993 * 119.35769 * 179.97438 * 6 4 3
26 26 H 0.96992 * 119.99753 * 179.97438 * 13 12 10
27 27 H 1.09000 * 109.23282 * 102.65012 * 18 8 7
28 28 H 1.09001 * 109.23643 * 222.03102 * 18 8 7
29 29 H 1.08999 * 109.70625 * 170.54765 * 19 18 8
30 30 H 1.09005 * 109.70817 * 291.16730 * 19 18 8
31 31 H 1.08998 * 109.69955 * 50.27591 * 20 19 18
32 32 H 1.09003 * 109.70044 * 170.83222 * 20 19 18
33 33 H 1.08996 * 109.23425 * 282.87746 * 21 7 6
34 34 H 1.09004 * 109.23223 * 42.25518 * 21 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0450 1.2088 0.0000
4 6 2.2681 1.8825 -1.1901
5 17 1.7574 1.1840 -2.6951
6 6 2.9014 3.1090 -1.1756
7 6 3.3182 3.6954 0.0208
8 6 3.1056 3.0566 1.2019
9 6 2.4663 1.7952 1.2108
10 6 2.2497 1.1229 2.4330
11 1 1.9865 1.6830 3.3181
12 6 2.3759 -0.2692 2.4977
13 7 1.6260 -0.9567 3.3210
14 14 3.6150 -1.1463 1.4092
15 1 4.9011 -1.2882 2.1379
16 1 3.0965 -2.4917 1.0537
17 1 3.8322 -0.3564 0.1706
18 6 3.5225 3.6342 2.5293
19 6 4.5535 4.7438 2.3346
20 6 4.0079 5.7288 1.2935
21 6 4.0035 5.0350 -0.0667
22 1 -0.3633 -1.0240 0.0864
23 1 -0.3632 0.5868 0.8436
24 1 -0.3633 0.4371 -0.9301
25 1 3.0720 3.6278 -2.1072
26 1 1.7132 -1.9216 3.3655
27 1 2.6469 4.0421 3.0343
28 1 3.9557 2.8453 3.1441
29 1 4.7190 5.2617 3.2793
30 1 5.4913 4.3162 1.9800
31 1 2.9922 6.0205 1.5605
32 1 4.6454 6.6122 1.2539
33 1 5.0314 4.8914 -0.3998
34 1 3.4774 5.6611 -0.7874
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000216968061.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:50:10
Heat of formation + Delta-G solvation = -45.464668 kcal
Electronic energy + Delta-G solvation = -18718.514358 eV
Core-core repulsion = 15834.308069 eV
Total energy + Delta-G solvation = -2884.206289 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 266.081 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-39.26363 -37.33068 -35.69877 -34.30241 -33.58152 -31.62509 -28.84475 -28.50900
-26.14389 -24.83045 -22.79191 -21.64823 -20.62193 -18.74716 -17.45831 -16.32371
-15.64169 -15.17875 -14.74536 -14.30487 -13.89145 -13.58932 -13.23584 -12.96507
-12.72840 -12.37275 -12.28921 -11.81264 -11.64594 -11.51929 -11.28989 -11.09120
-10.80092 -10.53231 -10.38382 -10.29151 -9.97775 -9.76642 -9.73318 -9.55627
-9.03763 -8.67066 -7.48321 -7.28042 -7.01363 -4.51164 2.32640 2.46551
3.10817 3.23031 3.29473 3.47322 4.19034 4.27599 4.87986 5.23113
5.36555 5.37831 5.41784 5.86535 5.99601 6.08646 6.10529 6.16027
6.20414 6.24788 6.28960 6.44044 6.46272 6.48371 6.56769 6.72689
6.78934 6.85899 6.97278 7.14070 7.31510 7.53431 7.74307 7.81806
8.19531 8.40398 8.67665 8.89249 9.95447
Molecular weight = 266.08amu
Principal moments of inertia in cm(-1)
A = 0.016016 B = 0.011227 C = 0.007592
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1747.782944 B = 2493.343479 C = 3687.146847
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 O -0.313 6.313
3 C -0.020 4.020
4 C 0.000 4.000
5 Cl -0.111 7.111
6 C -0.232 4.232
7 C -0.042 4.042
8 C -0.151 4.151
9 C 0.082 3.918
10 C -0.446 4.446
11 H 0.095 0.905
12 C 0.117 3.883
13 N -0.783 5.783
14 Si 0.907 3.093
15 H -0.287 1.287
16 H -0.280 1.280
17 H -0.230 1.230
18 C -0.056 4.056
19 C -0.119 4.119
20 C -0.116 4.116
21 C -0.072 4.072
22 H 0.071 0.929
23 H 0.044 0.956
24 H 0.030 0.970
25 H 0.103 0.897
26 H 0.286 0.714
27 H 0.056 0.944
28 H 0.073 0.927
29 H 0.055 0.945
30 H 0.060 0.940
31 H 0.061 0.939
32 H 0.055 0.945
33 H 0.064 0.936
34 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.169 5.840 -3.476 7.134
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 O -0.229 6.229
3 C -0.065 4.065
4 C -0.027 4.027
5 Cl -0.083 7.083
6 C -0.252 4.252
7 C -0.043 4.043
8 C -0.152 4.152
9 C 0.078 3.922
10 C -0.471 4.471
11 H 0.113 0.887
12 C -0.107 4.107
13 N -0.404 5.404
14 Si 0.732 3.268
15 H -0.214 1.214
16 H -0.206 1.206
17 H -0.153 1.153
18 C -0.093 4.093
19 C -0.156 4.156
20 C -0.153 4.153
21 C -0.109 4.109
22 H 0.089 0.911
23 H 0.062 0.938
24 H 0.048 0.952
25 H 0.121 0.879
26 H 0.096 0.904
27 H 0.074 0.926
28 H 0.092 0.908
29 H 0.074 0.926
30 H 0.078 0.922
31 H 0.080 0.920
32 H 0.074 0.926
33 H 0.083 0.917
34 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 2.068 5.378 -3.444 6.713
hybrid contribution 0.041 -0.518 -0.609 0.801
sum 2.109 4.859 -4.053 6.670
Atomic orbital electron populations
1.22748 0.82463 1.01173 0.99359 1.85974 1.18003 1.25345 1.93579
1.18064 1.06378 0.91307 0.90765 1.21048 1.02352 0.94945 0.84326
1.98263 1.90289 1.85120 1.34610 1.20100 1.11660 0.96296 0.97160
1.18792 0.98500 0.94813 0.92188 1.19255 1.04494 0.97969 0.93443
1.17780 0.91139 0.91555 0.91695 1.19228 1.40528 0.91536 0.95840
0.88723 1.26075 0.94070 0.97401 0.93197 1.69847 1.29391 1.09325
1.31864 0.86061 0.79139 0.78927 0.82682 1.21400 1.20581 1.15313
1.20120 0.97367 0.96717 0.95121 1.21577 0.99128 0.96867 0.98056
1.21510 1.00971 0.97405 0.95443 1.20361 0.99686 0.93762 0.97107
0.91067 0.93761 0.95183 0.87863 0.90399 0.92556 0.90825 0.92592
0.92172 0.92015 0.92635 0.91718 0.91936
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.78 11.05 101.05 1.12 1.89 16
2 O -0.31 -7.48 5.64 -18.71 -0.11 -7.58 16
3 C -0.02 -0.48 3.74 -38.43 -0.14 -0.62 16
4 C 0.00 0.00 6.32 -39.53 -0.25 -0.25 16
5 Cl -0.11 -2.23 28.05 -51.86 -1.45 -3.68 16
6 C -0.23 -4.85 9.37 -39.14 -0.37 -5.22 16
7 C -0.04 -0.85 5.71 -104.92 -0.60 -1.45 16
8 C -0.15 -3.27 5.76 -104.26 -0.60 -3.88 16
9 C 0.08 2.00 4.81 -106.54 -0.51 1.48 16
10 C -0.45 -11.31 8.01 -37.84 -0.30 -11.62 16
11 H 0.10 2.48 7.54 -52.49 -0.40 2.08 16
12 C 0.12 2.95 4.50 -17.33 -0.08 2.88 16
13 N -0.78 -19.93 13.93 55.55 0.77 -19.16 16
14 Si 0.91 21.49 25.57 -169.99 -4.35 17.15 16
15 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16
16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
17 H -0.23 -5.77 5.76 56.52 0.33 -5.44 16
18 C -0.06 -1.06 4.75 -28.06 -0.13 -1.20 16
19 C -0.12 -1.82 5.99 -26.69 -0.16 -1.98 16
20 C -0.12 -1.66 5.99 -26.70 -0.16 -1.82 16
21 C -0.07 -1.14 5.65 -28.03 -0.16 -1.30 16
22 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16
23 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16
24 H 0.03 0.58 7.73 -51.93 -0.40 0.17 16
25 H 0.10 1.95 8.05 -52.49 -0.42 1.53 16
26 H 0.29 6.71 8.30 -40.82 -0.34 6.37 16
27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16
28 H 0.07 1.46 7.34 -51.93 -0.38 1.08 16
29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
30 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16
31 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16
32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16
34 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16
LS Contribution 286.95 15.07 4.32 4.32
Total: -1.00 -26.20 286.95 -7.77 -33.97
By element:
Atomic # 1 Polarization: 2.68 SS G_CDS: -4.61 Total: -1.93 kcal
Atomic # 6 Polarization: -20.73 SS G_CDS: -2.35 Total: -23.08 kcal
Atomic # 7 Polarization: -19.93 SS G_CDS: 0.77 Total: -19.16 kcal
Atomic # 8 Polarization: -7.48 SS G_CDS: -0.11 Total: -7.58 kcal
Atomic # 14 Polarization: 21.49 SS G_CDS: -4.35 Total: 17.15 kcal
Atomic # 17 Polarization: -2.23 SS G_CDS: -1.45 Total: -3.68 kcal
Total LS contribution 4.32 Total: 4.32 kcal
Total: -26.20 -7.77 -33.97 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000216968061.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.499 kcal
(2) G-P(sol) polarization free energy of solvation -26.197 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.697 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.965 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.465 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds