Wall clock time and date at job start Mon Mar 30 2020 07:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35669 * 116.99947 * 2 1 4 4 C 1.38560 * 120.41702 * 275.14014 * 3 2 1 5 5 Cl 1.73601 * 120.10885 * 0.09594 * 4 3 2 6 6 C 1.38043 * 119.78969 * 180.29182 * 4 3 2 7 7 C 1.39607 * 121.27784 * 359.58678 * 6 4 3 8 8 C 1.35951 * 120.03000 * 0.13506 * 7 6 4 9 9 C 1.40976 * 120.41515 * 95.15325 * 3 2 1 10 10 C 1.41164 * 119.97839 * 0.09140 * 9 3 2 11 11 H 1.07998 * 119.99482 * 217.27451 * 10 9 3 12 12 C 1.39926 * 119.99881 * 37.27506 * 10 9 3 13 13 N 1.30876 * 119.99717 * 212.46769 * 12 10 9 14 14 Si 1.86798 * 120.00290 * 32.47559 * 12 10 9 15 15 H 1.48498 * 109.47521 * 92.04910 * 14 12 10 16 16 H 1.48501 * 109.47067 * 212.04518 * 14 12 10 17 17 H 1.48499 * 109.47006 * 332.04301 * 14 12 10 18 18 C 1.50639 * 122.82412 * 180.32863 * 8 7 6 19 19 C 1.52714 * 110.67754 * 342.34212 * 18 8 7 20 20 C 1.53354 * 108.24446 * 50.85589 * 19 18 8 21 21 C 1.50727 * 117.34182 * 179.86530 * 7 6 4 22 22 H 1.08998 * 109.46925 * 184.82338 * 1 2 3 23 23 H 1.08993 * 109.46701 * 304.82505 * 1 2 3 24 24 H 1.08998 * 109.46687 * 64.82871 * 1 2 3 25 25 H 1.07993 * 119.35769 * 179.97438 * 6 4 3 26 26 H 0.96992 * 119.99753 * 179.97438 * 13 12 10 27 27 H 1.09000 * 109.23282 * 102.65012 * 18 8 7 28 28 H 1.09001 * 109.23643 * 222.03102 * 18 8 7 29 29 H 1.08999 * 109.70625 * 170.54765 * 19 18 8 30 30 H 1.09005 * 109.70817 * 291.16730 * 19 18 8 31 31 H 1.08998 * 109.69955 * 50.27591 * 20 19 18 32 32 H 1.09003 * 109.70044 * 170.83222 * 20 19 18 33 33 H 1.08996 * 109.23425 * 282.87746 * 21 7 6 34 34 H 1.09004 * 109.23223 * 42.25518 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 2.2681 1.8825 -1.1901 5 17 1.7574 1.1840 -2.6951 6 6 2.9014 3.1090 -1.1756 7 6 3.3182 3.6954 0.0208 8 6 3.1056 3.0566 1.2019 9 6 2.4663 1.7952 1.2108 10 6 2.2497 1.1229 2.4330 11 1 1.9865 1.6830 3.3181 12 6 2.3759 -0.2692 2.4977 13 7 1.6260 -0.9567 3.3210 14 14 3.6150 -1.1463 1.4092 15 1 4.9011 -1.2882 2.1379 16 1 3.0965 -2.4917 1.0537 17 1 3.8322 -0.3564 0.1706 18 6 3.5225 3.6342 2.5293 19 6 4.5535 4.7438 2.3346 20 6 4.0079 5.7288 1.2935 21 6 4.0035 5.0350 -0.0667 22 1 -0.3633 -1.0240 0.0864 23 1 -0.3632 0.5868 0.8436 24 1 -0.3633 0.4371 -0.9301 25 1 3.0720 3.6278 -2.1072 26 1 1.7132 -1.9216 3.3655 27 1 2.6469 4.0421 3.0343 28 1 3.9557 2.8453 3.1441 29 1 4.7190 5.2617 3.2793 30 1 5.4913 4.3162 1.9800 31 1 2.9922 6.0205 1.5605 32 1 4.6454 6.6122 1.2539 33 1 5.0314 4.8914 -0.3998 34 1 3.4774 5.6611 -0.7874 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216968061.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:09 Heat of formation + Delta-G solvation = -58.094207 kcal Electronic energy + Delta-G solvation = -18719.062016 eV Core-core repulsion = 15834.308069 eV Total energy + Delta-G solvation = -2884.753947 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.92779 -38.94880 -37.36306 -35.90685 -35.32311 -33.27487 -30.41276 -30.06353 -27.85353 -26.58434 -24.23388 -23.12903 -22.34867 -20.23537 -19.27959 -18.05150 -17.27628 -16.98163 -16.37299 -15.98784 -15.39530 -15.08404 -14.84028 -14.48327 -14.39726 -14.07151 -13.83703 -13.31178 -13.28586 -13.07349 -12.91845 -12.80654 -12.40899 -12.22756 -11.90997 -11.86118 -11.59619 -11.39363 -11.14048 -11.07878 -10.82975 -10.42982 -9.26037 -8.95509 -8.90538 -6.40326 0.59601 0.69869 1.34273 1.37455 1.41196 1.54734 2.29503 2.48995 3.08229 3.53810 4.03841 4.12421 4.19956 4.44372 4.46828 4.54315 4.63096 4.68315 4.78481 4.84400 4.88062 4.89435 5.04818 5.14654 5.16508 5.23655 5.29604 5.35056 5.47849 5.59340 5.63509 5.80197 6.00509 6.14364 6.32990 6.61561 6.80619 7.09713 8.12171 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016016 B = 0.011227 C = 0.007592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.782944 B = 2493.343479 C = 3687.146847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.329 6.329 3 C -0.034 4.034 4 C -0.022 4.022 5 Cl -0.092 7.092 6 C -0.218 4.218 7 C -0.047 4.047 8 C -0.160 4.160 9 C 0.062 3.938 10 C -0.472 4.472 11 H 0.071 0.929 12 C 0.099 3.901 13 N -0.815 5.815 14 Si 0.942 3.058 15 H -0.280 1.280 16 H -0.278 1.278 17 H -0.250 1.250 18 C -0.056 4.056 19 C -0.114 4.114 20 C -0.111 4.111 21 C -0.072 4.072 22 H 0.089 0.911 23 H 0.026 0.974 24 H 0.044 0.956 25 H 0.130 0.870 26 H 0.291 0.709 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.300 7.874 -5.090 9.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.246 6.246 3 C -0.079 4.079 4 C -0.049 4.049 5 Cl -0.063 7.063 6 C -0.238 4.238 7 C -0.047 4.047 8 C -0.161 4.161 9 C 0.058 3.942 10 C -0.499 4.499 11 H 0.089 0.911 12 C -0.121 4.121 13 N -0.439 5.439 14 Si 0.767 3.233 15 H -0.207 1.207 16 H -0.203 1.203 17 H -0.174 1.174 18 C -0.093 4.093 19 C -0.151 4.151 20 C -0.149 4.149 21 C -0.109 4.109 22 H 0.107 0.893 23 H 0.045 0.955 24 H 0.063 0.937 25 H 0.147 0.853 26 H 0.102 0.898 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.202 7.413 -5.058 9.528 hybrid contribution -0.320 -1.008 -0.287 1.096 sum 2.882 6.404 -5.345 8.825 Atomic orbital electron populations 1.22811 0.81143 1.02196 0.99301 1.85895 1.19312 1.25719 1.93683 1.18319 1.06756 0.91402 0.91457 1.21244 1.03130 0.95662 0.84875 1.98259 1.90127 1.85008 1.32932 1.20589 1.09174 0.95412 0.98613 1.19341 0.97597 0.96664 0.91102 1.19691 1.03722 0.97163 0.95498 1.18077 0.91640 0.92892 0.91549 1.19071 1.43451 0.91723 0.95688 0.91114 1.26347 0.94475 0.97607 0.93685 1.69857 1.30654 1.09772 1.33657 0.85563 0.78619 0.78091 0.81017 1.20682 1.20292 1.17448 1.20122 0.98290 0.97495 0.93395 1.21567 0.97724 0.95919 0.99917 1.21517 1.01515 0.98016 0.93831 1.20476 1.00200 0.91400 0.98784 0.89273 0.95501 0.93715 0.85250 0.89840 0.92992 0.92739 0.90265 0.92008 0.92428 0.89113 0.90041 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.67 11.05 113.37 1.25 2.92 16 2 O -0.33 -15.84 5.64 -89.86 -0.51 -16.34 16 3 C -0.03 -1.65 3.74 23.02 0.09 -1.57 16 4 C -0.02 -0.97 6.32 22.30 0.14 -0.83 16 5 Cl -0.09 -3.51 28.05 -2.72 -0.08 -3.58 16 6 C -0.22 -8.52 9.37 22.55 0.21 -8.31 16 7 C -0.05 -1.76 5.71 -20.06 -0.11 -1.87 16 8 C -0.16 -6.86 5.76 -19.63 -0.11 -6.97 16 9 C 0.06 3.05 4.81 -21.11 -0.10 2.95 16 10 C -0.47 -25.01 8.01 23.40 0.19 -24.82 16 11 H 0.07 3.95 7.54 -2.91 -0.02 3.93 16 12 C 0.10 5.20 4.50 85.24 0.38 5.58 16 13 N -0.82 -43.02 13.93 21.83 0.30 -42.71 16 14 Si 0.94 44.93 25.57 68.60 1.75 46.68 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.25 -12.65 5.76 99.48 0.57 -12.08 16 18 C -0.06 -2.09 4.75 29.73 0.14 -1.95 16 19 C -0.11 -3.16 5.99 30.62 0.18 -2.97 16 20 C -0.11 -2.71 5.99 30.61 0.18 -2.53 16 21 C -0.07 -1.96 5.65 29.76 0.17 -1.79 16 22 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 23 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.04 1.69 7.73 -2.39 -0.02 1.67 16 25 H 0.13 4.34 8.05 -2.91 -0.02 4.32 16 26 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 27 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.05 2.22 7.34 -2.39 -0.02 2.20 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 1.70 8.10 -2.38 -0.02 1.68 16 31 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.08 1.98 8.12 -2.38 -0.02 1.96 16 Total: -1.00 -57.10 286.95 5.05 -52.05 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 0.96 Total: 6.06 kcal Atomic # 6 Polarization: -44.77 SS G_CDS: 2.61 Total: -42.16 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.30 Total: -42.71 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.51 Total: -16.34 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.75 Total: 46.68 kcal Atomic # 17 Polarization: -3.51 SS G_CDS: -0.08 Total: -3.58 kcal Total: -57.10 5.05 -52.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216968061.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.041 kcal (2) G-P(sol) polarization free energy of solvation -57.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds