Wall clock time and date at job start Mon Mar 30 2020 06:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86804 * 120.00042 * 2 1 4 4 H 1.48503 * 109.47192 * 270.00739 * 3 2 1 5 5 H 1.48497 * 109.46803 * 30.00110 * 3 2 1 6 6 H 1.48490 * 109.47109 * 150.00362 * 3 2 1 7 7 C 1.39883 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00027 * 193.49388 * 7 2 1 9 9 C 1.41211 * 120.00232 * 13.49388 * 7 2 1 10 10 C 1.40851 * 120.17456 * 206.37844 * 9 7 2 11 11 C 1.36445 * 119.83071 * 179.74014 * 10 9 7 12 12 C 1.39294 * 120.19139 * 0.55654 * 11 10 9 13 13 O 1.35697 * 119.81931 * 179.71506 * 12 11 10 14 14 C 1.42904 * 116.99789 * 5.48020 * 13 12 11 15 15 C 1.54886 * 110.48785 * 271.67465 * 14 13 12 16 16 C 1.54888 * 102.74653 * 203.38255 * 15 14 13 17 17 C 1.54269 * 104.19929 * 37.94413 * 16 15 14 18 18 C 1.53877 * 106.59716 * 336.38865 * 17 16 15 19 19 C 1.39410 * 120.35722 * 359.44345 * 12 11 10 20 20 Cl 1.73605 * 119.91638 * 180.29312 * 19 12 11 21 21 C 1.36528 * 120.16208 * 0.27416 * 19 12 11 22 22 H 0.96993 * 119.99699 * 359.97438 * 1 2 3 23 23 H 1.07995 * 120.08509 * 0.03110 * 10 9 7 24 24 H 1.07997 * 119.90166 * 180.27227 * 11 10 9 25 25 H 1.09004 * 110.53914 * 34.29232 * 14 13 12 26 26 H 1.08993 * 110.75982 * 85.06479 * 15 14 13 27 27 H 1.08998 * 110.75605 * 321.69325 * 15 14 13 28 28 H 1.09004 * 110.48737 * 279.26350 * 16 15 14 29 29 H 1.09006 * 110.48522 * 156.62004 * 16 15 14 30 30 H 1.08990 * 110.03532 * 95.67530 * 17 16 15 31 31 H 1.09004 * 110.03101 * 217.06106 * 17 16 15 32 32 H 1.08995 * 110.03352 * 119.28590 * 18 17 16 33 33 H 1.08996 * 110.03015 * 240.67184 * 18 17 16 34 34 H 1.07999 * 120.09774 * 179.97438 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4903 2.0466 -1.4001 5 1 1.4403 2.6526 0.7001 6 1 3.5404 1.4402 0.6999 7 6 2.0083 -1.2114 -0.0005 8 1 3.0659 -1.2244 0.2177 9 6 1.3315 -2.4174 -0.2864 10 6 1.8146 -3.6383 0.2233 11 6 1.1522 -4.7987 -0.0529 12 6 0.0075 -4.7801 -0.8463 13 8 -0.6421 -5.9393 -1.1211 14 6 -0.1684 -7.1189 -0.4680 15 6 0.9486 -7.7904 -1.3048 16 6 0.8999 -9.2613 -0.8221 17 6 -0.6037 -9.5457 -0.6264 18 6 -1.2830 -8.1835 -0.4012 19 6 -0.4776 -3.5761 -1.3550 20 17 -1.9097 -3.5652 -2.3364 21 6 0.1705 -2.4057 -1.0830 22 1 -0.4849 0.8400 0.0004 23 1 2.7044 -3.6554 0.8351 24 1 1.5191 -5.7350 0.3410 25 1 0.1940 -6.8827 0.5325 26 1 1.9180 -7.3434 -1.0845 27 1 0.7253 -7.7257 -2.3697 28 1 1.4349 -9.3712 0.1212 29 1 1.3183 -9.9251 -1.5787 30 1 -1.0122 -10.0240 -1.5164 31 1 -0.7525 -10.1861 0.2431 32 1 -2.0212 -8.0007 -1.1820 33 1 -1.7622 -8.1625 0.5776 34 1 -0.2060 -1.4737 -1.4780 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216968125.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:09 Heat of formation + Delta-G solvation = -57.230118 kcal Electronic energy + Delta-G solvation = -17686.148866 eV Core-core repulsion = 14801.432388 eV Total energy + Delta-G solvation = -2884.716477 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.89723 -38.97716 -37.14169 -37.02982 -35.12748 -31.46990 -31.05883 -29.62497 -28.84275 -26.69875 -23.52518 -22.68760 -21.50006 -20.94329 -19.41129 -18.89492 -17.19825 -16.83724 -16.34463 -15.98637 -15.83619 -15.19568 -14.84525 -14.57657 -14.26603 -13.88699 -13.73152 -13.29869 -12.96276 -12.88816 -12.79806 -12.58906 -12.15543 -12.09281 -12.01250 -11.86352 -11.73374 -11.45517 -11.38886 -11.32940 -11.19013 -10.87231 -9.45807 -8.91438 -8.58991 -6.29200 0.76610 0.90732 1.41333 1.50222 1.53880 1.54925 2.22506 2.56494 2.70049 3.57269 3.65135 3.71905 3.99191 4.19075 4.29522 4.51359 4.52910 4.59166 4.61405 4.79030 4.92800 4.95652 5.06106 5.07857 5.14558 5.20508 5.27514 5.28525 5.38866 5.46521 5.48690 5.74625 5.91985 6.13426 6.48626 6.74057 6.90285 6.98582 8.35871 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.030887 B = 0.005125 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.308497 B = 5462.421523 C = 6158.069141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.032 3.968 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.490 4.490 8 H 0.083 0.917 9 C 0.064 3.936 10 C -0.195 4.195 11 C -0.154 4.154 12 C 0.011 3.989 13 O -0.320 6.320 14 C 0.069 3.931 15 C -0.146 4.146 16 C -0.116 4.116 17 C -0.114 4.114 18 C -0.119 4.119 19 C -0.042 4.042 20 Cl -0.096 7.096 21 C -0.148 4.148 22 H 0.288 0.712 23 H 0.116 0.884 24 H 0.138 0.862 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.725 -12.207 -0.228 12.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.182 4.182 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.520 4.520 8 H 0.101 0.899 9 C 0.061 3.939 10 C -0.215 4.215 11 C -0.173 4.173 12 C -0.034 4.034 13 O -0.236 6.236 14 C 0.013 3.987 15 C -0.184 4.184 16 C -0.153 4.153 17 C -0.152 4.152 18 C -0.157 4.157 19 C -0.069 4.069 20 Cl -0.068 7.068 21 C -0.168 4.168 22 H 0.098 0.902 23 H 0.134 0.866 24 H 0.155 0.845 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.223 -12.097 -0.420 12.106 hybrid contribution 0.103 1.072 0.014 1.077 sum 0.326 -11.025 -0.406 11.038 Atomic orbital electron populations 1.69864 1.08935 1.30511 1.36516 1.26752 0.95517 1.04551 0.91377 0.85161 0.79039 0.75900 0.79383 1.18910 1.19562 1.17926 1.19732 0.97046 0.91443 1.43763 0.89880 1.17829 0.91967 0.93771 0.90336 1.20947 1.03049 0.92427 1.05067 1.20701 0.95801 0.99121 1.01647 1.18342 0.95826 0.84774 1.04472 1.85974 1.56633 1.14181 1.66762 1.23482 0.95943 0.83479 0.95843 1.23001 0.98155 0.97166 1.00105 1.22277 0.96768 0.94222 1.02071 1.22074 0.94888 0.95229 1.02976 1.22186 0.97152 0.93646 1.02711 1.19999 0.91725 0.93239 1.01911 1.98238 1.39453 1.98989 1.70122 1.20893 0.99046 0.95228 1.01640 0.90177 0.86576 0.84460 0.91068 0.91610 0.91682 0.90417 0.89936 0.90765 0.89712 0.91588 0.90539 0.86212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.55 10.82 21.82 0.24 -43.31 16 2 C 0.03 1.59 5.21 85.23 0.44 2.03 16 3 Si 0.98 37.79 29.58 68.60 2.03 39.82 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 5 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 6 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 7 C -0.49 -25.69 9.05 23.40 0.21 -25.47 16 8 H 0.08 4.13 7.88 -2.91 -0.02 4.10 16 9 C 0.06 3.37 5.57 -21.28 -0.12 3.25 16 10 C -0.20 -9.15 9.74 22.49 0.22 -8.93 16 11 C -0.15 -6.55 8.72 22.10 0.19 -6.36 16 12 C 0.01 0.49 6.68 22.81 0.15 0.65 16 13 O -0.32 -12.79 9.29 -90.17 -0.84 -13.62 16 14 C 0.07 2.08 2.68 31.67 0.08 2.17 16 15 C -0.15 -3.80 6.33 31.88 0.20 -3.60 16 16 C -0.12 -2.12 6.83 31.67 0.22 -1.91 16 17 C -0.11 -2.02 6.80 31.32 0.21 -1.80 16 18 C -0.12 -2.88 6.56 31.32 0.21 -2.67 16 19 C -0.04 -2.06 6.29 22.15 0.14 -1.92 16 20 Cl -0.10 -4.24 28.48 -2.72 -0.08 -4.32 16 21 C -0.15 -7.88 8.39 22.50 0.19 -7.70 16 22 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 23 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 24 H 0.14 4.85 5.39 -2.91 -0.02 4.84 16 25 H 0.07 2.15 6.31 -2.38 -0.02 2.13 16 26 H 0.07 1.75 7.49 -2.39 -0.02 1.73 16 27 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.08 1.26 8.14 -2.38 -0.02 1.25 16 29 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.07 1.73 8.07 -2.39 -0.02 1.71 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.12 6.74 6.13 -2.91 -0.02 6.73 16 Total: -1.00 -58.27 294.83 4.80 -53.47 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 1.10 Total: 20.23 kcal Atomic # 6 Polarization: -54.62 SS G_CDS: 2.35 Total: -52.27 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.24 Total: -43.31 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.84 Total: -13.62 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Atomic # 17 Polarization: -4.24 SS G_CDS: -0.08 Total: -4.32 kcal Total: -58.27 4.80 -53.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216968125.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.762 kcal (2) G-P(sol) polarization free energy of solvation -58.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds