Wall clock time and date at job start Mon Mar 30 2020 07:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00203 * 2 1 4 4 H 1.48498 * 109.47391 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47207 * 119.99799 * 3 2 1 6 6 H 1.48501 * 109.47135 * 239.99765 * 3 2 1 7 7 C 1.37880 * 119.99636 * 179.72105 * 2 1 3 8 8 H 1.07998 * 120.00109 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99887 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46786 * 178.18871 * 9 7 2 11 11 C 1.40013 * 110.99636 * 164.13980 * 10 9 7 12 12 C 1.38664 * 120.09074 * 53.82378 * 11 10 9 13 13 C 1.38357 * 119.98460 * 179.74463 * 12 11 10 14 14 Cl 1.73608 * 119.91344 * 180.25007 * 13 12 11 15 15 C 1.38351 * 120.17345 * 0.50091 * 13 12 11 16 16 C 1.38273 * 120.17443 * 359.77126 * 15 13 12 17 17 C 1.38651 * 120.01197 * 359.97438 * 16 15 13 18 18 N 1.40090 * 120.08243 * 180.02562 * 17 16 15 19 19 C 1.46898 * 111.00185 * 288.09588 * 10 9 7 20 20 C 1.53006 * 117.49566 * 236.10123 * 19 10 9 21 21 C 1.53002 * 117.50039 * 167.47845 * 19 10 9 22 22 H 0.96996 * 120.00681 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47378 * 298.18879 * 9 7 2 24 24 H 1.08996 * 109.47285 * 58.19246 * 9 7 2 25 25 H 1.08003 * 120.00413 * 359.97438 * 12 11 10 26 26 H 1.07999 * 119.91828 * 179.74551 * 15 13 12 27 27 H 1.08006 * 119.99698 * 179.97438 * 16 15 13 28 28 H 0.96996 * 119.99539 * 179.97438 * 18 17 16 29 29 H 0.97003 * 119.99740 * 359.97438 * 18 17 16 30 30 H 1.09001 * 115.55313 * 21.80370 * 19 10 9 31 31 H 1.08997 * 117.50251 * 359.97438 * 20 19 10 32 32 H 1.09005 * 117.49730 * 145.02299 * 20 19 10 33 33 H 1.08994 * 117.49959 * 214.97344 * 21 19 10 34 34 H 1.08995 * 117.49759 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0058 8 1 3.0844 -1.1942 0.0062 9 6 1.2508 -2.4992 0.0128 10 7 2.2048 -3.6156 -0.0257 11 6 1.5849 -4.8178 0.3360 12 6 0.4372 -5.2337 -0.3217 13 6 -0.1705 -6.4246 0.0339 14 17 -1.6037 -6.9467 -0.7952 15 6 0.3580 -7.1981 1.0521 16 6 1.4990 -6.7872 1.7164 17 6 2.1171 -5.5976 1.3625 18 7 3.2734 -5.1803 2.0342 19 6 2.8342 -3.7250 -1.3485 20 6 2.7155 -5.0643 -2.0788 21 6 4.0557 -4.6375 -1.4764 22 1 -0.4851 -0.8400 -0.0004 23 1 0.6491 -2.5665 0.9191 24 1 0.5998 -2.5474 -0.8601 25 1 0.0200 -4.6298 -1.1140 26 1 -0.1221 -8.1250 1.3291 27 1 1.9088 -7.3931 2.5110 28 1 3.7050 -4.3480 1.7854 29 1 3.6424 -5.7236 2.7481 30 1 2.8178 -2.8184 -1.9534 31 1 2.1707 -5.8643 -1.5775 32 1 2.6208 -5.0389 -3.1644 33 1 4.8425 -4.3314 -2.1658 34 1 4.3924 -5.1563 -0.5790 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228408890.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:36 Heat of formation + Delta-G solvation = 51.516617 kcal Electronic energy + Delta-G solvation = -18199.749870 eV Core-core repulsion = 15352.041756 eV Total energy + Delta-G solvation = -2847.708114 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.06581 -37.24877 -36.14965 -34.04044 -33.90068 -32.40396 -29.57634 -28.00344 -25.78395 -23.00852 -22.35217 -22.11095 -21.42035 -19.70470 -17.04708 -16.92103 -16.53988 -16.02490 -15.59999 -14.73773 -14.13944 -13.77137 -13.62789 -13.58754 -13.05561 -12.45253 -12.18372 -12.10684 -11.74021 -11.69193 -11.29172 -11.17781 -10.88209 -10.74231 -10.59938 -10.18968 -10.11409 -9.89522 -9.77651 -8.83590 -8.48062 -8.39670 -7.52748 -7.14064 -6.40470 -4.11150 1.51992 1.67573 2.50984 3.42071 3.43772 3.62701 3.93664 4.16094 4.23540 4.47933 4.61568 5.07240 5.20040 5.30932 5.38407 5.45526 5.52990 5.61607 5.90588 5.99085 6.01020 6.19075 6.29314 6.34731 6.51260 6.53436 6.59056 6.79899 6.93053 7.03808 7.61034 7.80506 7.89510 8.12207 8.28802 8.53474 8.81388 9.59601 10.98059 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.006326 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.325942 B = 4424.865289 C = 4897.446710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.016 3.984 3 Si 1.073 2.927 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.591 4.591 8 H 0.059 0.941 9 C 0.191 3.809 10 N -0.461 5.461 11 C 0.042 3.958 12 C -0.084 4.084 13 C -0.088 4.088 14 Cl -0.092 7.092 15 C -0.073 4.073 16 C -0.195 4.195 17 C 0.240 3.760 18 N -0.863 5.863 19 C 0.051 3.949 20 C -0.223 4.223 21 C -0.179 4.179 22 H 0.267 0.733 23 H 0.021 0.979 24 H -0.010 1.010 25 H 0.129 0.871 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.412 0.588 29 H 0.391 0.609 30 H 0.124 0.876 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.291 -13.673 0.831 14.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.188 4.188 3 Si 0.901 3.099 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.629 4.629 8 H 0.077 0.923 9 C 0.068 3.932 10 N -0.181 5.181 11 C -0.057 4.057 12 C -0.105 4.105 13 C -0.118 4.118 14 Cl -0.064 7.064 15 C -0.092 4.092 16 C -0.219 4.219 17 C 0.132 3.868 18 N -0.401 5.401 19 C -0.057 4.057 20 C -0.262 4.262 21 C -0.217 4.217 22 H 0.078 0.922 23 H 0.039 0.961 24 H 0.008 0.992 25 H 0.147 0.853 26 H 0.144 0.856 27 H 0.144 0.856 28 H 0.243 0.757 29 H 0.218 0.782 30 H 0.142 0.858 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.328 -11.903 1.104 12.713 hybrid contribution -0.302 -1.829 -0.437 1.905 sum 4.025 -13.732 0.666 14.325 Atomic orbital electron populations 1.70790 1.06900 1.30521 1.46489 1.25841 0.96449 1.02667 0.93875 0.83484 0.74787 0.75142 0.76524 1.20852 1.21413 1.21465 1.21931 0.94900 0.90642 1.55460 0.92289 1.19915 0.90070 0.87833 0.95419 1.59500 1.32845 1.01060 1.24653 1.18393 0.95139 0.94268 0.97930 1.21484 0.95264 0.94410 0.99388 1.20447 0.92759 0.98090 1.00473 1.98320 1.38998 1.90617 1.78443 1.20630 0.95406 0.98975 0.94231 1.20351 0.99081 0.97643 1.04785 1.17736 0.87180 0.91572 0.90301 1.42543 1.28563 1.28423 1.40539 1.22648 0.98981 0.93694 0.90415 1.23599 1.01652 1.01141 0.99775 1.22988 0.91506 1.04826 1.02420 0.92225 0.96064 0.99193 0.85345 0.85622 0.85615 0.75664 0.78156 0.85837 0.88399 0.89544 0.89320 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.33 13.65 55.43 0.76 -26.57 16 2 C 0.02 0.44 5.46 -17.82 -0.10 0.35 16 3 Si 1.07 24.80 29.90 -169.99 -5.08 19.71 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.59 -16.13 8.57 -34.44 -0.30 -16.42 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.19 4.79 3.38 -4.97 -0.02 4.77 16 10 N -0.46 -9.44 3.79 -164.71 -0.62 -10.07 16 11 C 0.04 0.76 3.30 -83.51 -0.28 0.49 16 12 C -0.08 -1.51 6.62 -39.38 -0.26 -1.77 16 13 C -0.09 -1.40 6.32 -39.50 -0.25 -1.65 16 14 Cl -0.09 -1.36 28.95 -51.86 -1.50 -2.86 16 15 C -0.07 -1.01 9.82 -39.53 -0.39 -1.40 16 16 C -0.19 -2.66 9.89 -39.42 -0.39 -3.05 16 17 C 0.24 3.79 6.78 -83.47 -0.57 3.23 16 18 N -0.86 -11.74 9.09 32.55 0.30 -11.44 16 19 C 0.05 0.96 5.64 -67.71 -0.38 0.58 16 20 C -0.22 -3.62 9.12 -26.72 -0.24 -3.87 16 21 C -0.18 -2.82 10.27 -26.73 -0.27 -3.09 16 22 H 0.27 8.04 7.22 -40.82 -0.29 7.75 16 23 H 0.02 0.58 7.90 -51.93 -0.41 0.17 16 24 H -0.01 -0.26 7.20 -51.93 -0.37 -0.63 16 25 H 0.13 2.47 7.35 -52.48 -0.39 2.09 16 26 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 27 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 28 H 0.41 6.23 8.11 -40.82 -0.33 5.90 16 29 H 0.39 4.02 8.85 -40.82 -0.36 3.65 16 30 H 0.12 2.56 7.57 -51.93 -0.39 2.17 16 31 H 0.10 1.65 5.42 -51.93 -0.28 1.37 16 32 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 299.84 15.07 4.52 4.52 Total: -1.00 -29.18 299.84 -9.23 -38.41 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -4.15 Total: 10.14 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -3.44 Total: -21.84 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.43 Total: -48.08 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.71 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -1.50 Total: -2.86 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.18 -9.23 -38.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228408890.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.924 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds