Wall clock time and date at job start Mon Mar 30 2020 07:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00203 * 2 1 4 4 H 1.48498 * 109.47391 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47207 * 119.99799 * 3 2 1 6 6 H 1.48501 * 109.47135 * 239.99765 * 3 2 1 7 7 C 1.37880 * 119.99636 * 179.72105 * 2 1 3 8 8 H 1.07998 * 120.00109 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99887 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46786 * 178.18871 * 9 7 2 11 11 C 1.40013 * 110.99636 * 164.13980 * 10 9 7 12 12 C 1.38664 * 120.09074 * 53.82378 * 11 10 9 13 13 C 1.38357 * 119.98460 * 179.74463 * 12 11 10 14 14 Cl 1.73608 * 119.91344 * 180.25007 * 13 12 11 15 15 C 1.38351 * 120.17345 * 0.50091 * 13 12 11 16 16 C 1.38273 * 120.17443 * 359.77126 * 15 13 12 17 17 C 1.38651 * 120.01197 * 359.97438 * 16 15 13 18 18 N 1.40090 * 120.08243 * 180.02562 * 17 16 15 19 19 C 1.46898 * 111.00185 * 288.09588 * 10 9 7 20 20 C 1.53006 * 117.49566 * 236.10123 * 19 10 9 21 21 C 1.53002 * 117.50039 * 167.47845 * 19 10 9 22 22 H 0.96996 * 120.00681 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47378 * 298.18879 * 9 7 2 24 24 H 1.08996 * 109.47285 * 58.19246 * 9 7 2 25 25 H 1.08003 * 120.00413 * 359.97438 * 12 11 10 26 26 H 1.07999 * 119.91828 * 179.74551 * 15 13 12 27 27 H 1.08006 * 119.99698 * 179.97438 * 16 15 13 28 28 H 0.96996 * 119.99539 * 179.97438 * 18 17 16 29 29 H 0.97003 * 119.99740 * 359.97438 * 18 17 16 30 30 H 1.09001 * 115.55313 * 21.80370 * 19 10 9 31 31 H 1.08997 * 117.50251 * 359.97438 * 20 19 10 32 32 H 1.09005 * 117.49730 * 145.02299 * 20 19 10 33 33 H 1.08994 * 117.49959 * 214.97344 * 21 19 10 34 34 H 1.08995 * 117.49759 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0058 8 1 3.0844 -1.1942 0.0062 9 6 1.2508 -2.4992 0.0128 10 7 2.2048 -3.6156 -0.0257 11 6 1.5849 -4.8178 0.3360 12 6 0.4372 -5.2337 -0.3217 13 6 -0.1705 -6.4246 0.0339 14 17 -1.6037 -6.9467 -0.7952 15 6 0.3580 -7.1981 1.0521 16 6 1.4990 -6.7872 1.7164 17 6 2.1171 -5.5976 1.3625 18 7 3.2734 -5.1803 2.0342 19 6 2.8342 -3.7250 -1.3485 20 6 2.7155 -5.0643 -2.0788 21 6 4.0557 -4.6375 -1.4764 22 1 -0.4851 -0.8400 -0.0004 23 1 0.6491 -2.5665 0.9191 24 1 0.5998 -2.5474 -0.8601 25 1 0.0200 -4.6298 -1.1140 26 1 -0.1221 -8.1250 1.3291 27 1 1.9088 -7.3931 2.5110 28 1 3.7050 -4.3480 1.7854 29 1 3.6424 -5.7236 2.7481 30 1 2.8178 -2.8184 -1.9534 31 1 2.1707 -5.8643 -1.5775 32 1 2.6208 -5.0389 -3.1644 33 1 4.8425 -4.3314 -2.1658 34 1 4.3924 -5.1563 -0.5790 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228408890.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:36 Heat of formation + Delta-G solvation = 33.738612 kcal Electronic energy + Delta-G solvation = -18200.520782 eV Core-core repulsion = 15352.041756 eV Total energy + Delta-G solvation = -2848.479026 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.41236 -38.59146 -37.35772 -35.86252 -35.07428 -34.17738 -30.98266 -29.35159 -27.60514 -24.77810 -23.88368 -23.44067 -22.70475 -21.13759 -18.95286 -18.21238 -17.79822 -17.36481 -17.18264 -16.07216 -15.62876 -15.43275 -15.16734 -14.86080 -14.39792 -14.00105 -13.93370 -13.68725 -13.19298 -13.00298 -12.77853 -12.59769 -12.52208 -12.43862 -11.93537 -11.82442 -11.67779 -11.24541 -11.04198 -10.85060 -10.57491 -9.75835 -9.14575 -8.67694 -8.32587 -6.39077 0.27576 0.44148 1.29798 1.53832 1.62137 1.81404 2.55060 2.70355 2.78883 3.06069 3.12441 3.20235 3.86608 3.87591 4.07184 4.15137 4.22490 4.40200 4.62196 4.70444 4.73903 4.76240 4.87166 4.91583 5.04872 5.12486 5.22848 5.25626 5.35665 5.71031 5.83321 5.97352 6.32001 6.40526 6.53124 6.78571 7.09748 7.41820 8.70510 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.006326 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.325942 B = 4424.865289 C = 4897.446710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.037 4.037 3 Si 1.122 2.878 4 H -0.287 1.287 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.594 4.594 8 H 0.059 0.941 9 C 0.211 3.789 10 N -0.454 5.454 11 C 0.007 3.993 12 C -0.098 4.098 13 C -0.099 4.099 14 Cl -0.087 7.087 15 C -0.062 4.062 16 C -0.181 4.181 17 C 0.236 3.764 18 N -0.853 5.853 19 C 0.014 3.986 20 C -0.208 4.208 21 C -0.149 4.149 22 H 0.251 0.749 23 H -0.010 1.010 24 H -0.039 1.039 25 H 0.099 0.901 26 H 0.159 0.841 27 H 0.166 0.834 28 H 0.405 0.595 29 H 0.409 0.591 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.174 -15.445 1.768 16.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.234 4.234 3 Si 0.943 3.057 4 H -0.212 1.212 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.632 4.632 8 H 0.078 0.922 9 C 0.086 3.914 10 N -0.173 5.173 11 C -0.092 4.092 12 C -0.119 4.119 13 C -0.128 4.128 14 Cl -0.058 7.058 15 C -0.081 4.081 16 C -0.205 4.205 17 C 0.127 3.873 18 N -0.391 5.391 19 C -0.094 4.094 20 C -0.246 4.246 21 C -0.187 4.187 22 H 0.061 0.939 23 H 0.008 0.992 24 H -0.022 1.022 25 H 0.117 0.883 26 H 0.176 0.824 27 H 0.184 0.816 28 H 0.235 0.765 29 H 0.240 0.760 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.242 -13.731 2.054 15.222 hybrid contribution -0.914 -1.401 -0.725 1.824 sum 5.327 -15.133 1.329 16.098 Atomic orbital electron populations 1.70925 1.08064 1.29563 1.48989 1.27409 0.96436 1.06708 0.92874 0.82872 0.73982 0.70842 0.78043 1.21244 1.19352 1.19380 1.22238 0.95010 0.91725 1.54261 0.92242 1.19461 0.90039 0.89496 0.92425 1.59398 1.31321 1.00931 1.25633 1.18508 0.96351 0.94302 1.00020 1.21276 0.95935 0.95324 0.99387 1.20557 0.93135 0.97790 1.01351 1.98317 1.38620 1.90366 1.78504 1.21033 0.95045 0.99425 0.92630 1.20779 0.98221 0.96649 1.04827 1.17889 0.87832 0.92021 0.89545 1.42505 1.27743 1.28247 1.40652 1.22560 1.02460 0.94046 0.90305 1.23558 1.01954 0.98951 1.00163 1.23040 0.90982 1.01975 1.02691 0.93931 0.99217 1.02178 0.88288 0.82392 0.81625 0.76493 0.76009 0.88726 0.88675 0.88393 0.87203 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.56 13.65 21.45 0.29 -58.27 16 2 C -0.04 -2.13 5.46 84.66 0.46 -1.67 16 3 Si 1.12 50.11 29.90 68.60 2.05 52.16 16 4 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.59 -33.56 8.57 25.60 0.22 -33.34 16 8 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 9 C 0.21 11.23 3.38 85.56 0.29 11.52 16 10 N -0.45 -19.20 3.79 -675.03 -2.56 -21.76 16 11 C 0.01 0.27 3.30 38.23 0.13 0.39 16 12 C -0.10 -3.62 6.62 22.40 0.15 -3.47 16 13 C -0.10 -3.07 6.32 22.33 0.14 -2.93 16 14 Cl -0.09 -2.50 28.95 -2.72 -0.08 -2.58 16 15 C -0.06 -1.54 9.82 22.31 0.22 -1.32 16 16 C -0.18 -4.29 9.89 22.38 0.22 -4.07 16 17 C 0.24 7.04 6.78 38.21 0.26 7.30 16 18 N -0.85 -21.32 9.09 -50.93 -0.46 -21.78 16 19 C 0.01 0.55 5.64 44.92 0.25 0.81 16 20 C -0.21 -6.65 9.12 30.60 0.28 -6.37 16 21 C -0.15 -4.44 10.27 30.60 0.31 -4.13 16 22 H 0.25 16.10 7.22 -92.71 -0.67 15.43 16 23 H -0.01 -0.60 7.90 -2.39 -0.02 -0.62 16 24 H -0.04 -2.28 7.20 -2.39 -0.02 -2.30 16 25 H 0.10 4.15 7.35 -2.91 -0.02 4.13 16 26 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 27 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 28 H 0.41 11.67 8.11 -92.71 -0.75 10.92 16 29 H 0.41 7.06 8.85 -92.71 -0.82 6.24 16 30 H 0.09 4.15 7.57 -2.39 -0.02 4.13 16 31 H 0.09 3.15 5.42 -2.39 -0.01 3.14 16 32 H 0.10 2.87 8.14 -2.38 -0.02 2.85 16 33 H 0.11 2.81 8.14 -2.39 -0.02 2.80 16 34 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -66.15 299.84 1.84 -64.31 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -0.34 Total: 25.21 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 2.93 Total: -37.29 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -2.73 Total: -101.81 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.05 Total: 52.16 kcal Atomic # 17 Polarization: -2.50 SS G_CDS: -0.08 Total: -2.58 kcal Total: -66.15 1.84 -64.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228408890.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.049 kcal (2) G-P(sol) polarization free energy of solvation -66.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds