Wall clock time and date at job start Mon Mar 30 2020 07:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46986 * 2 1 4 4 H 1.09003 * 109.46708 * 54.14561 * 3 2 1 5 5 C 1.50700 * 109.47034 * 174.14478 * 3 2 1 6 6 H 1.07997 * 119.99311 * 114.79258 * 5 3 2 7 7 C 1.37877 * 119.99996 * 294.51964 * 5 3 2 8 8 N 1.31510 * 120.00452 * 353.25438 * 7 5 3 9 9 Si 1.86802 * 119.99730 * 173.25567 * 7 5 3 10 10 H 1.48506 * 109.46866 * 60.00190 * 9 7 5 11 11 H 1.48498 * 109.47285 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47083 * 299.99995 * 9 7 5 13 13 C 1.50698 * 109.46922 * 294.14923 * 3 2 1 14 14 O 1.21248 * 119.99769 * 269.99480 * 13 3 2 15 15 C 1.47167 * 119.99992 * 90.00029 * 13 3 2 16 16 C 1.39873 * 120.16765 * 179.97438 * 15 13 3 17 17 C 1.37867 * 119.85719 * 179.97438 * 16 15 13 18 18 C 1.38407 * 120.18634 * 359.97438 * 17 16 15 19 19 C 1.50694 * 119.83333 * 180.02562 * 18 17 16 20 20 C 1.38499 * 120.33340 * 359.97438 * 18 17 16 21 21 Cl 1.73601 * 119.92348 * 180.02562 * 20 18 17 22 22 C 1.38028 * 120.14608 * 359.79436 * 20 18 17 23 23 H 1.09000 * 109.47181 * 183.17498 * 1 2 3 24 24 H 1.08997 * 109.47693 * 303.17744 * 1 2 3 25 25 H 1.08997 * 109.47160 * 63.17847 * 1 2 3 26 26 H 1.08998 * 109.47475 * 240.00143 * 2 1 3 27 27 H 1.08996 * 109.46992 * 120.00188 * 2 1 3 28 28 H 0.96998 * 120.00171 * 180.02562 * 8 7 5 29 29 H 1.08002 * 120.06926 * 0.02562 * 16 15 13 30 30 H 1.07997 * 119.90834 * 179.97438 * 17 16 15 31 31 H 1.08998 * 109.47816 * 89.99542 * 19 18 17 32 32 H 1.09004 * 109.46986 * 210.00119 * 19 18 17 33 33 H 1.08998 * 109.47050 * 329.99049 * 19 18 17 34 34 H 1.08004 * 120.09661 * 180.25476 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5935 1.9857 0.8330 5 6 3.5400 1.4451 0.1449 6 1 4.1597 1.8091 -0.6612 7 6 4.1209 0.9879 1.3088 8 7 3.3680 0.6747 2.3406 9 14 5.9774 0.8134 1.4200 10 1 6.6131 2.1369 1.1976 11 1 6.3473 0.3072 2.7662 12 1 6.4477 -0.1420 0.3850 13 6 1.6594 2.1099 -1.2965 14 8 2.4097 2.0590 -2.2476 15 6 0.3770 2.8234 -1.4081 16 6 0.0205 3.4444 -2.6096 17 6 -1.1826 4.1106 -2.7072 18 6 -2.0378 4.1658 -1.6204 19 6 -3.3511 4.8956 -1.7361 20 6 -1.6930 3.5527 -0.4273 21 17 -2.7740 3.6279 0.9291 22 6 -0.4941 2.8779 -0.3158 23 1 -0.3633 -1.0261 0.0569 24 1 -0.3634 0.5623 0.8601 25 1 -0.3633 0.4637 -0.9171 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.7768 0.3534 3.1595 29 1 0.6858 3.4015 -3.4592 30 1 -1.4586 4.5908 -3.6344 31 1 -4.1220 4.2047 -2.0774 32 1 -3.6297 5.2988 -0.7624 33 1 -3.2515 5.7114 -2.4520 34 1 -0.2279 2.3966 0.6137 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233865167.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:07 Heat of formation + Delta-G solvation = -38.296572 kcal Electronic energy + Delta-G solvation = -17907.679365 eV Core-core repulsion = 15023.783908 eV Total energy + Delta-G solvation = -2883.895457 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 5.02 seconds Orbital eigenvalues (eV) -39.80717 -37.99584 -36.26988 -34.51677 -32.83259 -31.66783 -30.56083 -28.06532 -27.23834 -23.88407 -22.72945 -22.28932 -20.82025 -18.76210 -16.87437 -16.17647 -15.61578 -15.16521 -14.78175 -14.39588 -14.14160 -13.91531 -13.66469 -13.41339 -12.72300 -12.46748 -12.30885 -12.28606 -11.91637 -11.60349 -11.44329 -11.24967 -11.17428 -10.88569 -10.77611 -10.68936 -10.24986 -10.01543 -9.85630 -9.05142 -8.73551 -8.51406 -8.50096 -8.34623 -6.09231 -4.11112 0.90319 1.33826 2.21090 2.99117 3.33115 3.36615 3.41728 4.00967 4.40154 4.67602 4.76277 4.94332 5.13064 5.24504 5.41739 5.47926 5.56336 5.62685 5.81526 5.96324 6.07970 6.11435 6.16129 6.29374 6.35697 6.43931 6.69500 6.77431 6.84882 6.88053 7.07029 7.48275 7.65598 7.90121 8.18628 8.56450 8.93465 9.52755 10.99968 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.025955 B = 0.005685 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.536758 B = 4923.783490 C = 5435.264668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.102 4.102 3 C 0.011 3.989 4 H 0.057 0.943 5 C -0.511 4.511 6 H 0.066 0.934 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.401 3.599 14 O -0.460 6.460 15 C -0.147 4.147 16 C -0.065 4.065 17 C -0.128 4.128 18 C -0.062 4.062 19 C -0.119 4.119 20 C -0.053 4.053 21 Cl -0.071 7.071 22 C -0.055 4.055 23 H 0.040 0.960 24 H 0.052 0.948 25 H 0.039 0.961 26 H 0.041 0.959 27 H 0.089 0.911 28 H 0.263 0.737 29 H 0.136 0.864 30 H 0.131 0.869 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.285 5.735 -5.263 15.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.141 4.141 3 C -0.008 4.008 4 H 0.075 0.925 5 C -0.549 4.549 6 H 0.084 0.916 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.201 1.201 13 C 0.279 3.721 14 O -0.335 6.335 15 C -0.148 4.148 16 C -0.084 4.084 17 C -0.146 4.146 18 C -0.063 4.063 19 C -0.176 4.176 20 C -0.080 4.080 21 Cl -0.042 7.042 22 C -0.073 4.073 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.154 0.846 30 H 0.149 0.851 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.973 5.647 -5.447 15.161 hybrid contribution 0.803 -0.106 0.343 0.880 sum -12.170 5.542 -5.104 14.313 Atomic orbital electron populations 1.22123 0.98749 1.00256 1.00308 1.21433 0.91941 0.98136 1.02549 1.19192 0.98143 0.93227 0.90248 0.92474 1.20997 0.89815 1.42916 1.01194 0.91563 1.24921 0.98353 0.95187 0.95250 1.69920 1.35284 1.44528 1.03004 0.86592 0.85384 0.78701 0.77023 1.20193 1.21263 1.20076 1.23338 0.82077 0.75430 0.91235 1.90360 1.50656 1.51852 1.40656 1.21094 0.98199 1.01589 0.93929 1.21557 0.95704 0.93625 0.97485 1.20893 0.94238 1.01410 0.98059 1.19910 0.97148 0.97221 0.91980 1.20891 0.93537 0.99728 1.03434 1.20707 0.93686 1.04246 0.89313 1.98345 1.64168 1.97288 1.44439 1.21750 0.90839 0.94732 1.00014 0.94051 0.92912 0.94156 0.94009 0.89275 0.92741 0.84641 0.85072 0.90648 0.90759 0.91153 0.82879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 8.35 37.16 0.31 -2.59 16 2 C -0.10 -2.31 5.28 -26.73 -0.14 -2.46 16 3 C 0.01 0.26 1.62 -92.92 -0.15 0.11 16 4 H 0.06 1.43 6.45 -51.93 -0.33 1.09 16 5 C -0.51 -14.13 8.28 -34.44 -0.29 -14.41 16 6 H 0.07 1.90 7.09 -52.49 -0.37 1.53 16 7 C 0.06 1.77 5.20 -17.82 -0.09 1.68 16 8 N -0.89 -24.58 12.03 55.43 0.67 -23.91 16 9 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 13 C 0.40 8.95 5.70 -30.69 -0.18 8.77 16 14 O -0.46 -11.25 15.92 5.59 0.09 -11.16 16 15 C -0.15 -2.68 5.00 -105.07 -0.53 -3.21 16 16 C -0.07 -1.02 9.60 -39.11 -0.38 -1.40 16 17 C -0.13 -1.62 9.67 -39.65 -0.38 -2.01 16 18 C -0.06 -0.78 5.89 -104.47 -0.62 -1.40 16 19 C -0.12 -1.13 9.60 36.00 0.35 -0.78 16 20 C -0.05 -0.77 6.31 -39.56 -0.25 -1.02 16 21 Cl -0.07 -0.94 27.27 -51.86 -1.41 -2.35 16 22 C -0.05 -0.92 7.27 -39.07 -0.28 -1.21 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.94 6.58 -51.93 -0.34 0.60 16 25 H 0.04 0.71 6.04 -51.93 -0.31 0.40 16 26 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.09 2.21 6.68 -51.93 -0.35 1.86 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 29 H 0.14 2.05 7.65 -52.49 -0.40 1.64 16 30 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.70 6.88 -51.93 -0.36 0.34 16 33 H 0.07 0.54 8.08 -51.93 -0.42 0.13 16 34 H 0.15 2.71 4.53 -52.48 -0.24 2.47 16 LS Contribution 294.62 15.07 4.44 4.44 Total: -1.00 -28.87 294.62 -7.81 -36.68 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -3.95 Total: -0.12 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -2.62 Total: -19.92 kcal Atomic # 7 Polarization: -24.58 SS G_CDS: 0.67 Total: -23.91 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.41 Total: -2.35 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.87 -7.81 -36.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233865167.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.612 kcal (2) G-P(sol) polarization free energy of solvation -28.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.02 seconds