Wall clock time and date at job start Mon Mar 30 2020 07:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46986 * 2 1 4 4 H 1.09003 * 109.46708 * 54.14561 * 3 2 1 5 5 C 1.50700 * 109.47034 * 174.14478 * 3 2 1 6 6 H 1.07997 * 119.99311 * 114.79258 * 5 3 2 7 7 C 1.37877 * 119.99996 * 294.51964 * 5 3 2 8 8 N 1.31510 * 120.00452 * 353.25438 * 7 5 3 9 9 Si 1.86802 * 119.99730 * 173.25567 * 7 5 3 10 10 H 1.48506 * 109.46866 * 60.00190 * 9 7 5 11 11 H 1.48498 * 109.47285 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47083 * 299.99995 * 9 7 5 13 13 C 1.50698 * 109.46922 * 294.14923 * 3 2 1 14 14 O 1.21248 * 119.99769 * 269.99480 * 13 3 2 15 15 C 1.47167 * 119.99992 * 90.00029 * 13 3 2 16 16 C 1.39873 * 120.16765 * 179.97438 * 15 13 3 17 17 C 1.37867 * 119.85719 * 179.97438 * 16 15 13 18 18 C 1.38407 * 120.18634 * 359.97438 * 17 16 15 19 19 C 1.50694 * 119.83333 * 180.02562 * 18 17 16 20 20 C 1.38499 * 120.33340 * 359.97438 * 18 17 16 21 21 Cl 1.73601 * 119.92348 * 180.02562 * 20 18 17 22 22 C 1.38028 * 120.14608 * 359.79436 * 20 18 17 23 23 H 1.09000 * 109.47181 * 183.17498 * 1 2 3 24 24 H 1.08997 * 109.47693 * 303.17744 * 1 2 3 25 25 H 1.08997 * 109.47160 * 63.17847 * 1 2 3 26 26 H 1.08998 * 109.47475 * 240.00143 * 2 1 3 27 27 H 1.08996 * 109.46992 * 120.00188 * 2 1 3 28 28 H 0.96998 * 120.00171 * 180.02562 * 8 7 5 29 29 H 1.08002 * 120.06926 * 0.02562 * 16 15 13 30 30 H 1.07997 * 119.90834 * 179.97438 * 17 16 15 31 31 H 1.08998 * 109.47816 * 89.99542 * 19 18 17 32 32 H 1.09004 * 109.46986 * 210.00119 * 19 18 17 33 33 H 1.08998 * 109.47050 * 329.99049 * 19 18 17 34 34 H 1.08004 * 120.09661 * 180.25476 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5935 1.9857 0.8330 5 6 3.5400 1.4451 0.1449 6 1 4.1597 1.8091 -0.6612 7 6 4.1209 0.9879 1.3088 8 7 3.3680 0.6747 2.3406 9 14 5.9774 0.8134 1.4200 10 1 6.6131 2.1369 1.1976 11 1 6.3473 0.3072 2.7662 12 1 6.4477 -0.1420 0.3850 13 6 1.6594 2.1099 -1.2965 14 8 2.4097 2.0590 -2.2476 15 6 0.3770 2.8234 -1.4081 16 6 0.0205 3.4444 -2.6096 17 6 -1.1826 4.1106 -2.7072 18 6 -2.0378 4.1658 -1.6204 19 6 -3.3511 4.8956 -1.7361 20 6 -1.6930 3.5527 -0.4273 21 17 -2.7740 3.6279 0.9291 22 6 -0.4941 2.8779 -0.3158 23 1 -0.3633 -1.0261 0.0569 24 1 -0.3634 0.5623 0.8601 25 1 -0.3633 0.4637 -0.9171 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.7768 0.3534 3.1595 29 1 0.6858 3.4015 -3.4592 30 1 -1.4586 4.5908 -3.6344 31 1 -4.1220 4.2047 -2.0774 32 1 -3.6297 5.2988 -0.7624 33 1 -3.2515 5.7114 -2.4520 34 1 -0.2279 2.3966 0.6137 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233865167.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:05 Heat of formation + Delta-G solvation = -52.922103 kcal Electronic energy + Delta-G solvation = -17908.313575 eV Core-core repulsion = 15023.783908 eV Total energy + Delta-G solvation = -2884.529668 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.21777 -39.47411 -37.37750 -36.38205 -34.24266 -33.34942 -31.76124 -29.78230 -28.51767 -25.70786 -23.99355 -23.67871 -22.29695 -20.36934 -18.66856 -17.87745 -17.09237 -16.49384 -16.28770 -15.99649 -15.55902 -15.30229 -14.92896 -14.84213 -14.37904 -14.02804 -13.51870 -13.35368 -13.27451 -13.22626 -12.87466 -12.79330 -12.59340 -12.43654 -12.31521 -12.14785 -11.89904 -11.76362 -11.62260 -11.04843 -10.52288 -10.19899 -9.88654 -9.66887 -8.19684 -6.28268 -0.37835 0.17498 1.10057 1.39296 1.40625 1.47631 1.53017 2.40145 2.68288 3.11303 3.27558 3.71763 3.81982 4.07053 4.22407 4.39516 4.45868 4.48586 4.56944 4.70223 4.73126 4.83009 4.85462 4.99255 5.05937 5.19583 5.22416 5.28105 5.34262 5.38464 5.56896 5.69137 5.73026 5.83734 6.18754 6.75142 6.83170 7.38021 8.88375 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.025955 B = 0.005685 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.536758 B = 4923.783490 C = 5435.264668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C 0.005 3.995 4 H 0.045 0.955 5 C -0.538 4.538 6 H 0.045 0.955 7 C 0.026 3.974 8 N -0.907 5.907 9 Si 0.950 3.050 10 H -0.274 1.274 11 H -0.275 1.275 12 H -0.275 1.275 13 C 0.403 3.597 14 O -0.496 6.496 15 C -0.175 4.175 16 C -0.067 4.067 17 C -0.114 4.114 18 C -0.046 4.046 19 C -0.120 4.120 20 C -0.061 4.061 21 Cl -0.059 7.059 22 C -0.061 4.061 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.029 0.971 27 H 0.063 0.937 28 H 0.266 0.734 29 H 0.136 0.864 30 H 0.174 0.826 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.465 6.907 -6.088 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 C -0.013 4.013 4 H 0.063 0.937 5 C -0.576 4.576 6 H 0.063 0.937 7 C -0.175 4.175 8 N -0.545 5.545 9 Si 0.776 3.224 10 H -0.200 1.200 11 H -0.200 1.200 12 H -0.201 1.201 13 C 0.284 3.716 14 O -0.374 6.374 15 C -0.176 4.176 16 C -0.085 4.085 17 C -0.132 4.132 18 C -0.047 4.047 19 C -0.176 4.176 20 C -0.088 4.088 21 Cl -0.030 7.030 22 C -0.080 4.080 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.154 0.846 30 H 0.191 0.809 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.172 6.820 -6.256 17.772 hybrid contribution 1.376 -0.405 0.613 1.560 sum -13.795 6.415 -5.643 16.227 Atomic orbital electron populations 1.21976 0.95333 1.01780 1.01001 1.21259 0.94949 0.96617 1.00553 1.19152 0.96392 0.94388 0.91410 0.93671 1.21215 0.91772 1.43666 1.00967 0.93707 1.25570 1.02282 0.94750 0.94868 1.69997 1.36692 1.44597 1.03221 0.85731 0.80702 0.78599 0.77390 1.19967 1.19959 1.20059 1.23281 0.83562 0.75001 0.89731 1.90326 1.52279 1.53573 1.41224 1.20633 0.96859 1.04063 0.96073 1.21673 0.97029 0.93539 0.96286 1.21292 0.92440 0.99880 0.99597 1.20401 0.98237 0.95256 0.90762 1.21024 0.91659 1.00468 1.04441 1.20800 0.93180 1.04169 0.90628 1.98349 1.63389 1.97224 1.44019 1.21557 0.91858 0.95607 0.98945 0.91987 0.92450 0.93255 0.95234 0.91841 0.92483 0.84632 0.80895 0.88889 0.90688 0.88569 0.84568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.32 8.35 71.98 0.60 -4.72 16 2 C -0.10 -4.49 5.28 30.60 0.16 -4.32 16 3 C 0.01 0.28 1.62 -12.28 -0.02 0.26 16 4 H 0.05 2.38 6.45 -2.39 -0.02 2.37 16 5 C -0.54 -31.12 8.28 25.60 0.21 -30.91 16 6 H 0.04 2.72 7.09 -2.91 -0.02 2.70 16 7 C 0.03 1.43 5.20 84.66 0.44 1.87 16 8 N -0.91 -51.35 12.03 21.45 0.26 -51.09 16 9 Si 0.95 44.68 29.54 68.60 2.03 46.71 16 10 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 C 0.40 18.73 5.70 28.03 0.16 18.89 16 14 O -0.50 -25.39 15.92 -2.93 -0.05 -25.43 16 15 C -0.18 -6.43 5.00 -20.15 -0.10 -6.53 16 16 C -0.07 -2.00 9.60 22.58 0.22 -1.78 16 17 C -0.11 -2.47 9.67 22.22 0.21 -2.26 16 18 C -0.05 -0.99 5.89 -19.76 -0.12 -1.11 16 19 C -0.12 -1.67 9.60 71.23 0.68 -0.99 16 20 C -0.06 -1.66 6.31 22.28 0.14 -1.52 16 21 Cl -0.06 -1.43 27.27 -2.72 -0.07 -1.50 16 22 C -0.06 -2.04 7.27 22.60 0.16 -1.87 16 23 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.06 2.06 6.58 -2.39 -0.02 2.04 16 25 H 0.05 1.73 6.04 -2.39 -0.01 1.71 16 26 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 3.28 6.68 -2.39 -0.02 3.26 16 28 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.14 3.99 7.65 -2.91 -0.02 3.97 16 30 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 31 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.09 6.88 -2.39 -0.02 1.08 16 33 H 0.10 0.92 8.08 -2.39 -0.02 0.90 16 34 H 0.14 4.94 4.53 -2.91 -0.01 4.93 16 Total: -1.00 -64.88 294.62 6.04 -58.84 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 1.12 Total: 7.47 kcal Atomic # 6 Polarization: -37.75 SS G_CDS: 2.76 Total: -34.99 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.26 Total: -51.09 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.05 Total: -25.43 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.07 Total: -1.50 kcal Total: -64.88 6.04 -58.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233865167.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.918 kcal (2) G-P(sol) polarization free energy of solvation -64.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds