Wall clock time and date at job start Mon Mar 30 2020 07:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52990 * 109.47418 * 2 1 4 4 H 1.09000 * 109.47116 * 306.47561 * 3 2 1 5 5 C 1.50706 * 109.47261 * 66.47276 * 3 2 1 6 6 H 1.07995 * 119.99406 * 35.08226 * 5 3 2 7 7 C 1.37876 * 119.99951 * 215.08379 * 5 3 2 8 8 N 1.31517 * 119.99564 * 184.34484 * 7 5 3 9 9 Si 1.86796 * 120.00096 * 4.33994 * 7 5 3 10 10 H 1.48500 * 109.47263 * 84.88739 * 9 7 5 11 11 H 1.48503 * 109.47049 * 204.88570 * 9 7 5 12 12 H 1.48494 * 109.47406 * 324.88497 * 9 7 5 13 13 C 1.50699 * 109.47195 * 186.47172 * 3 2 1 14 14 O 1.21259 * 120.00189 * 269.99956 * 13 3 2 15 15 C 1.47088 * 120.00096 * 90.00368 * 13 3 2 16 16 C 1.39930 * 120.15567 * 354.01418 * 15 13 3 17 17 C 1.37791 * 119.83674 * 179.97438 * 16 15 13 18 18 C 1.38591 * 120.15877 * 359.97438 * 17 16 15 19 19 Cl 1.73605 * 119.83628 * 180.02562 * 18 17 16 20 20 C 1.38542 * 120.32288 * 0.02629 * 18 17 16 21 21 C 1.37832 * 120.15791 * 359.69444 * 20 18 17 22 22 C 1.50707 * 120.08211 * 180.27518 * 21 20 18 23 23 H 1.09002 * 109.47356 * 184.27784 * 1 2 3 24 24 H 1.08998 * 109.47301 * 304.28209 * 1 2 3 25 25 H 1.09006 * 109.47249 * 64.27875 * 1 2 3 26 26 H 1.09005 * 109.47133 * 239.99674 * 2 1 3 27 27 H 1.09003 * 109.47171 * 120.00490 * 2 1 3 28 28 H 0.96993 * 119.99715 * 180.02562 * 8 7 5 29 29 H 1.07995 * 120.07926 * 359.97438 * 16 15 13 30 30 H 1.07999 * 119.92173 * 180.02562 * 17 16 15 31 31 H 1.07995 * 119.92089 * 179.97438 * 20 18 17 32 32 H 1.09000 * 109.47022 * 262.88428 * 22 21 20 33 33 H 1.08997 * 109.46679 * 22.88243 * 22 21 20 34 34 H 1.08999 * 109.46662 * 142.88467 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5852 1.9886 -0.8263 5 6 1.6728 2.1051 1.3027 6 1 1.6693 1.5318 2.2180 7 6 1.3412 3.4432 1.3260 8 7 1.1041 4.0420 2.4727 9 14 1.2290 4.4056 -0.2710 10 1 -0.1205 4.2253 -0.8639 11 1 1.4611 5.8467 0.0022 12 1 2.2572 3.9101 -1.2209 13 6 3.5385 1.4453 -0.1601 14 8 4.2529 1.4071 0.8189 15 6 4.1344 1.4947 -1.5040 16 6 3.3188 1.4129 -2.6381 17 6 3.8840 1.4603 -3.8938 18 6 5.2566 1.5894 -4.0352 19 17 5.9598 1.6490 -5.6213 20 6 6.0703 1.6710 -2.9169 21 6 5.5184 1.6306 -1.6545 22 6 6.4046 1.7258 -0.4392 23 1 -0.3634 -1.0248 0.0767 24 1 -0.3634 0.5788 0.8491 25 1 -0.3634 0.4460 -0.9259 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.8705 4.9832 2.4891 29 1 2.2490 1.3127 -2.5293 30 1 3.2558 1.3977 -4.7701 31 1 7.1392 1.7710 -3.0345 32 1 6.6120 0.7246 -0.0615 33 1 7.3412 2.2132 -0.7099 34 1 5.9015 2.3084 0.3325 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233865208.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:59 Heat of formation + Delta-G solvation = -34.780899 kcal Electronic energy + Delta-G solvation = -18066.238013 eV Core-core repulsion = 15182.495007 eV Total energy + Delta-G solvation = -2883.743006 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -39.91603 -37.87202 -36.42982 -34.65839 -32.50292 -32.02817 -30.92142 -28.13664 -26.91334 -24.29500 -23.25541 -21.73198 -20.56917 -18.81606 -17.22430 -16.57589 -15.86386 -15.48953 -14.53737 -14.31693 -14.18691 -13.69198 -13.47066 -13.12783 -13.05812 -12.74498 -12.48804 -12.15736 -12.06025 -11.87246 -11.37628 -11.23503 -11.15099 -11.07900 -10.95926 -10.76291 -10.52672 -9.85802 -9.67770 -9.31046 -8.83733 -8.75995 -8.54248 -8.35539 -6.16424 -4.15835 0.82306 1.34154 2.02753 2.97876 3.18769 3.26255 3.29758 3.94122 4.30989 4.65598 4.79239 4.84656 5.18991 5.27505 5.35444 5.54591 5.75723 5.82785 5.89016 5.95256 6.00028 6.05912 6.17618 6.23341 6.34052 6.37838 6.49083 6.59200 6.72607 6.82194 6.92561 7.02769 7.12834 7.57071 8.34319 8.59065 8.92376 9.43495 10.96404 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021183 B = 0.006293 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.506211 B = 4448.172002 C = 4484.864255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 C -0.024 4.024 4 H 0.053 0.947 5 C -0.493 4.493 6 H 0.081 0.919 7 C 0.075 3.925 8 N -0.889 5.889 9 Si 0.860 3.140 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.263 1.263 13 C 0.384 3.616 14 O -0.436 6.436 15 C -0.153 4.153 16 C -0.059 4.059 17 C -0.134 4.134 18 C -0.014 4.014 19 Cl -0.078 7.078 20 C -0.130 4.130 21 C -0.024 4.024 22 C -0.121 4.121 23 H 0.038 0.962 24 H 0.074 0.926 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.059 0.941 28 H 0.265 0.735 29 H 0.143 0.857 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.242 -5.405 -13.573 15.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.136 4.136 3 C -0.043 4.043 4 H 0.071 0.929 5 C -0.530 4.530 6 H 0.099 0.901 7 C -0.128 4.128 8 N -0.526 5.526 9 Si 0.687 3.313 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.188 1.188 13 C 0.260 3.740 14 O -0.310 6.310 15 C -0.155 4.155 16 C -0.077 4.077 17 C -0.153 4.153 18 C -0.041 4.041 19 Cl -0.049 7.049 20 C -0.148 4.148 21 C -0.025 4.025 22 C -0.177 4.177 23 H 0.057 0.943 24 H 0.093 0.907 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.160 0.840 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.629 -5.229 -13.082 15.570 hybrid contribution -0.005 0.817 -1.234 1.480 sum 6.624 -4.412 -14.317 16.380 Atomic orbital electron populations 1.21669 0.95679 0.99957 1.02451 1.21319 0.96287 0.95961 0.99986 1.19701 0.88955 0.95696 0.99970 0.92913 1.20657 1.45171 0.94752 0.92405 0.90121 1.25063 0.94635 0.97329 0.95771 1.69878 1.46587 1.11381 1.24760 0.87094 0.79368 0.79952 0.84881 1.19552 1.21187 1.18786 1.23767 0.94095 0.70748 0.85386 1.90339 1.64072 1.34879 1.41708 1.21291 0.93446 1.03194 0.97521 1.21532 1.00643 0.94785 0.90747 1.20969 0.92745 1.03205 0.98352 1.21103 0.93541 1.03687 0.85760 1.98354 1.84510 1.96796 1.25225 1.20880 0.99925 1.03558 0.90456 1.20271 0.93561 0.93839 0.94831 1.21096 0.97444 1.03513 0.95618 0.94297 0.90747 0.93925 0.94314 0.92239 0.92460 0.83982 0.84733 0.84865 0.90425 0.92490 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.81 37.16 0.36 -2.07 16 2 C -0.10 -1.83 5.36 -26.74 -0.14 -1.98 16 3 C -0.02 -0.52 1.07 -92.93 -0.10 -0.62 16 4 H 0.05 1.12 3.89 -51.93 -0.20 0.92 16 5 C -0.49 -13.22 7.29 -34.44 -0.25 -13.47 16 6 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.89 -26.54 13.96 55.43 0.77 -25.77 16 9 Si 0.86 20.50 26.98 -169.99 -4.59 15.92 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.26 -5.95 6.84 56.52 0.39 -5.57 16 13 C 0.38 8.30 6.09 -30.72 -0.19 8.11 16 14 O -0.44 -10.39 13.36 5.58 0.07 -10.31 16 15 C -0.15 -2.80 5.87 -105.06 -0.62 -3.42 16 16 C -0.06 -0.93 9.32 -39.11 -0.36 -1.29 16 17 C -0.13 -1.83 9.81 -39.61 -0.39 -2.22 16 18 C -0.01 -0.19 6.33 -39.34 -0.25 -0.44 16 19 Cl -0.08 -0.91 28.95 -51.86 -1.50 -2.41 16 20 C -0.13 -1.82 9.44 -39.62 -0.37 -2.19 16 21 C -0.02 -0.40 5.92 -104.15 -0.62 -1.02 16 22 C -0.12 -1.89 8.70 36.01 0.31 -1.57 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 1.47 7.30 -51.93 -0.38 1.09 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.14 2.09 6.53 -52.49 -0.34 1.74 16 30 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.13 1.56 8.05 -52.49 -0.42 1.14 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.72 8.03 -51.93 -0.42 0.31 16 34 H 0.10 1.85 5.93 -51.93 -0.31 1.54 16 LS Contribution 299.62 15.07 4.52 4.52 Total: -1.00 -29.52 299.62 -7.61 -37.13 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -4.18 Total: 1.13 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -2.71 Total: -20.20 kcal Atomic # 7 Polarization: -26.54 SS G_CDS: 0.77 Total: -25.77 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.07 Total: -10.31 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.59 Total: 15.92 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.52 -7.61 -37.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233865208.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.352 kcal (2) G-P(sol) polarization free energy of solvation -29.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds