Wall clock time and date at job start Mon Mar 30 2020 07:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52990 * 109.47418 * 2 1 4 4 H 1.09000 * 109.47116 * 306.47561 * 3 2 1 5 5 C 1.50706 * 109.47261 * 66.47276 * 3 2 1 6 6 H 1.07995 * 119.99406 * 35.08226 * 5 3 2 7 7 C 1.37876 * 119.99951 * 215.08379 * 5 3 2 8 8 N 1.31517 * 119.99564 * 184.34484 * 7 5 3 9 9 Si 1.86796 * 120.00096 * 4.33994 * 7 5 3 10 10 H 1.48500 * 109.47263 * 84.88739 * 9 7 5 11 11 H 1.48503 * 109.47049 * 204.88570 * 9 7 5 12 12 H 1.48494 * 109.47406 * 324.88497 * 9 7 5 13 13 C 1.50699 * 109.47195 * 186.47172 * 3 2 1 14 14 O 1.21259 * 120.00189 * 269.99956 * 13 3 2 15 15 C 1.47088 * 120.00096 * 90.00368 * 13 3 2 16 16 C 1.39930 * 120.15567 * 354.01418 * 15 13 3 17 17 C 1.37791 * 119.83674 * 179.97438 * 16 15 13 18 18 C 1.38591 * 120.15877 * 359.97438 * 17 16 15 19 19 Cl 1.73605 * 119.83628 * 180.02562 * 18 17 16 20 20 C 1.38542 * 120.32288 * 0.02629 * 18 17 16 21 21 C 1.37832 * 120.15791 * 359.69444 * 20 18 17 22 22 C 1.50707 * 120.08211 * 180.27518 * 21 20 18 23 23 H 1.09002 * 109.47356 * 184.27784 * 1 2 3 24 24 H 1.08998 * 109.47301 * 304.28209 * 1 2 3 25 25 H 1.09006 * 109.47249 * 64.27875 * 1 2 3 26 26 H 1.09005 * 109.47133 * 239.99674 * 2 1 3 27 27 H 1.09003 * 109.47171 * 120.00490 * 2 1 3 28 28 H 0.96993 * 119.99715 * 180.02562 * 8 7 5 29 29 H 1.07995 * 120.07926 * 359.97438 * 16 15 13 30 30 H 1.07999 * 119.92173 * 180.02562 * 17 16 15 31 31 H 1.07995 * 119.92089 * 179.97438 * 20 18 17 32 32 H 1.09000 * 109.47022 * 262.88428 * 22 21 20 33 33 H 1.08997 * 109.46679 * 22.88243 * 22 21 20 34 34 H 1.08999 * 109.46662 * 142.88467 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5852 1.9886 -0.8263 5 6 1.6728 2.1051 1.3027 6 1 1.6693 1.5318 2.2180 7 6 1.3412 3.4432 1.3260 8 7 1.1041 4.0420 2.4727 9 14 1.2290 4.4056 -0.2710 10 1 -0.1205 4.2253 -0.8639 11 1 1.4611 5.8467 0.0022 12 1 2.2572 3.9101 -1.2209 13 6 3.5385 1.4453 -0.1601 14 8 4.2529 1.4071 0.8189 15 6 4.1344 1.4947 -1.5040 16 6 3.3188 1.4129 -2.6381 17 6 3.8840 1.4603 -3.8938 18 6 5.2566 1.5894 -4.0352 19 17 5.9598 1.6490 -5.6213 20 6 6.0703 1.6710 -2.9169 21 6 5.5184 1.6306 -1.6545 22 6 6.4046 1.7258 -0.4392 23 1 -0.3634 -1.0248 0.0767 24 1 -0.3634 0.5788 0.8491 25 1 -0.3634 0.4460 -0.9259 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.8705 4.9832 2.4891 29 1 2.2490 1.3127 -2.5293 30 1 3.2558 1.3977 -4.7701 31 1 7.1392 1.7710 -3.0345 32 1 6.6120 0.7246 -0.0615 33 1 7.3412 2.2132 -0.7099 34 1 5.9015 2.3084 0.3325 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233865208.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:57 Heat of formation + Delta-G solvation = -50.797905 kcal Electronic energy + Delta-G solvation = -18066.932563 eV Core-core repulsion = 15182.495007 eV Total energy + Delta-G solvation = -2884.437556 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 5.06 seconds Orbital eigenvalues (eV) -41.29453 -39.28998 -37.47090 -36.36953 -34.10616 -33.62554 -32.17270 -29.76527 -28.22439 -26.05969 -24.60814 -22.99814 -21.98871 -20.43007 -19.17165 -17.87239 -17.17491 -16.83426 -16.33205 -15.79164 -15.60521 -15.17596 -15.01047 -14.65092 -14.38127 -14.20408 -13.79272 -13.53372 -13.35645 -13.28837 -12.91863 -12.80486 -12.50403 -12.44343 -12.29079 -12.14488 -11.85054 -11.77315 -11.39361 -11.17939 -10.81007 -10.07482 -9.93259 -9.72859 -8.30476 -6.34262 -0.43481 0.22133 0.99802 1.29933 1.33487 1.40643 1.53914 2.30785 2.63586 2.94033 3.44168 3.67314 3.76713 4.10067 4.19729 4.25106 4.38567 4.43901 4.52814 4.66113 4.71987 4.74834 4.82102 4.99642 5.05944 5.08396 5.14298 5.19720 5.25584 5.42951 5.50017 5.59815 5.68538 5.71093 6.25062 6.71595 6.92509 7.28275 8.86758 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021183 B = 0.006293 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.506211 B = 4448.172002 C = 4484.864255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 C -0.028 4.028 4 H 0.070 0.930 5 C -0.489 4.489 6 H 0.027 0.973 7 C 0.012 3.988 8 N -0.946 5.946 9 Si 0.923 3.077 10 H -0.245 1.245 11 H -0.293 1.293 12 H -0.241 1.241 13 C 0.382 3.618 14 O -0.477 6.477 15 C -0.184 4.184 16 C -0.061 4.061 17 C -0.126 4.126 18 C -0.010 4.010 19 Cl -0.054 7.054 20 C -0.125 4.125 21 C -0.035 4.035 22 C -0.118 4.118 23 H 0.067 0.933 24 H 0.037 0.963 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.037 0.963 28 H 0.265 0.735 29 H 0.154 0.846 30 H 0.167 0.833 31 H 0.158 0.842 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.787 -5.828 -18.246 20.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.133 4.133 3 C -0.047 4.047 4 H 0.088 0.912 5 C -0.527 4.527 6 H 0.046 0.954 7 C -0.186 4.186 8 N -0.586 5.586 9 Si 0.745 3.255 10 H -0.169 1.169 11 H -0.220 1.220 12 H -0.164 1.164 13 C 0.261 3.739 14 O -0.354 6.354 15 C -0.185 4.185 16 C -0.080 4.080 17 C -0.144 4.144 18 C -0.037 4.037 19 Cl -0.025 7.025 20 C -0.143 4.143 21 C -0.035 4.035 22 C -0.174 4.174 23 H 0.086 0.914 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.172 0.828 30 H 0.184 0.816 31 H 0.176 0.824 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.167 -5.684 -17.787 20.002 hybrid contribution -0.091 0.851 0.189 0.877 sum 7.077 -4.833 -17.598 19.574 Atomic orbital electron populations 1.21631 0.94403 1.01411 1.01955 1.21307 0.97404 0.93912 1.00696 1.19745 0.90087 0.97388 0.97498 0.91236 1.20796 1.44320 0.94645 0.92930 0.95447 1.25976 0.94504 0.98532 0.99541 1.70055 1.49130 1.11759 1.27627 0.86082 0.81105 0.77603 0.80671 1.16911 1.21991 1.16413 1.23781 0.93581 0.69645 0.86887 1.90341 1.64601 1.36995 1.43424 1.20982 0.94724 1.06860 0.95961 1.21684 1.01050 0.94536 0.90702 1.21277 0.93144 1.01505 0.98463 1.21289 0.93785 1.01888 0.86719 1.98374 1.84188 1.96528 1.23403 1.21070 1.01302 1.02463 0.89456 1.20355 0.92978 0.94231 0.95960 1.21012 0.98393 1.03191 0.94784 0.91443 0.94334 0.91734 0.90663 0.94391 0.92594 0.82847 0.81552 0.82394 0.90486 0.89474 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 9.81 71.98 0.71 -3.85 16 2 C -0.10 -3.52 5.36 30.59 0.16 -3.36 16 3 C -0.03 -1.22 1.07 -12.29 -0.01 -1.24 16 4 H 0.07 2.81 3.89 -2.39 -0.01 2.80 16 5 C -0.49 -27.59 7.29 25.60 0.19 -27.40 16 6 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 7 C 0.01 0.68 5.47 84.65 0.46 1.14 16 8 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 9 Si 0.92 42.17 26.98 68.60 1.85 44.03 16 10 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 12 H -0.24 -10.03 6.84 99.48 0.68 -9.35 16 13 C 0.38 16.64 6.09 28.01 0.17 16.81 16 14 O -0.48 -23.84 13.36 -2.97 -0.04 -23.88 16 15 C -0.18 -6.42 5.87 -20.15 -0.12 -6.53 16 16 C -0.06 -1.72 9.32 22.57 0.21 -1.51 16 17 C -0.13 -2.82 9.81 22.25 0.22 -2.60 16 18 C -0.01 -0.23 6.33 22.43 0.14 -0.08 16 19 Cl -0.05 -1.01 28.95 -2.72 -0.08 -1.09 16 20 C -0.12 -3.04 9.44 22.25 0.21 -2.83 16 21 C -0.03 -1.07 5.92 -19.56 -0.12 -1.19 16 22 C -0.12 -3.63 8.70 71.24 0.62 -3.01 16 23 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.04 1.54 7.30 -2.39 -0.02 1.52 16 25 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 26 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 27 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 29 H 0.15 3.83 6.53 -2.91 -0.02 3.82 16 30 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.16 3.01 8.05 -2.91 -0.02 2.99 16 32 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.09 2.06 8.03 -2.39 -0.02 2.05 16 34 H 0.06 2.44 5.93 -2.39 -0.01 2.43 16 Total: -1.00 -69.07 299.62 5.95 -63.11 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 1.08 Total: 12.72 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: 2.84 Total: -35.65 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.30 Total: -59.23 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.04 Total: -23.88 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.85 Total: 44.03 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.09 kcal Total: -69.07 5.95 -63.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233865208.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.316 kcal (2) G-P(sol) polarization free energy of solvation -69.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.06 seconds