Wall clock time and date at job start Mon Mar 30 2020 07:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47091 * 2 1 4 4 H 1.09006 * 109.47397 * 305.91320 * 3 2 1 5 5 C 1.50695 * 109.47254 * 185.91118 * 3 2 1 6 6 H 1.07997 * 120.00416 * 275.19503 * 5 3 2 7 7 C 1.37880 * 120.00312 * 95.19145 * 5 3 2 8 8 N 1.31508 * 120.00350 * 184.64493 * 7 5 3 9 9 Si 1.86802 * 119.99511 * 4.64551 * 7 5 3 10 10 H 1.48504 * 109.46929 * 84.86105 * 9 7 5 11 11 H 1.48505 * 109.47045 * 204.85522 * 9 7 5 12 12 H 1.48495 * 109.47147 * 324.85878 * 9 7 5 13 13 C 1.50700 * 109.47206 * 65.91260 * 3 2 1 14 14 O 1.21251 * 120.00030 * 94.99481 * 13 3 2 15 15 C 1.47171 * 120.00058 * 275.00023 * 13 3 2 16 16 C 1.39875 * 120.16518 * 359.71860 * 15 13 3 17 17 C 1.37869 * 119.85493 * 180.29744 * 16 15 13 18 18 C 1.38409 * 120.18580 * 359.97438 * 17 16 15 19 19 C 1.50693 * 119.83012 * 179.97438 * 18 17 16 20 20 C 1.38489 * 120.33436 * 0.02562 * 18 17 16 21 21 Cl 1.73605 * 119.92745 * 179.97438 * 20 18 17 22 22 C 1.38039 * 120.14790 * 0.02562 * 20 18 17 23 23 H 1.08997 * 109.47520 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46981 * 300.00149 * 1 2 3 25 25 H 1.09009 * 109.47159 * 59.99606 * 1 2 3 26 26 H 1.08997 * 109.47202 * 240.00357 * 2 1 3 27 27 H 1.08996 * 109.47139 * 120.00091 * 2 1 3 28 28 H 0.97002 * 120.00558 * 180.02562 * 8 7 5 29 29 H 1.08005 * 120.07052 * 0.25857 * 16 15 13 30 30 H 1.07998 * 119.90771 * 179.97438 * 17 16 15 31 31 H 1.09003 * 109.47396 * 270.02340 * 19 18 17 32 32 H 1.08996 * 109.47375 * 30.02116 * 19 18 17 33 33 H 1.08995 * 109.47252 * 150.02752 * 19 18 17 34 34 H 1.08000 * 120.09628 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5928 1.9861 -0.8323 5 6 3.5398 1.4451 -0.1463 6 1 4.1676 1.3294 0.7248 7 6 4.1107 1.5950 -1.3924 8 7 5.4152 1.5060 -1.5331 9 14 3.0311 1.9247 -2.8807 10 1 2.7605 3.3813 -2.9830 11 1 3.7268 1.4631 -4.1089 12 1 1.7479 1.1920 -2.7335 13 6 1.6607 2.1094 1.2971 14 8 2.4490 2.1365 2.2180 15 6 0.3335 2.7277 1.4461 16 6 -0.5764 2.7036 0.3840 17 6 -1.8156 3.2901 0.5285 18 6 -2.1613 3.9018 1.7210 19 6 -3.5178 4.5409 1.8699 20 6 -1.2665 3.9303 2.7776 21 17 -1.7109 4.7009 4.2684 22 6 -0.0216 3.3482 2.6476 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 5.8169 1.6119 -2.4096 29 1 -0.3084 2.2269 -0.5474 30 1 -2.5187 3.2723 -0.2912 31 1 -3.4639 5.5845 1.5597 32 1 -4.2387 4.0132 1.2456 33 1 -3.8321 4.4876 2.9122 34 1 0.6754 3.3705 3.4723 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234028253.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:20 Heat of formation + Delta-G solvation = -32.510393 kcal Electronic energy + Delta-G solvation = -17928.619828 eV Core-core repulsion = 15044.975279 eV Total energy + Delta-G solvation = -2883.644550 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -39.97099 -38.10324 -36.42158 -34.69651 -32.88126 -32.04315 -30.67510 -28.42076 -27.50881 -23.81222 -22.92874 -22.21007 -21.07966 -18.72969 -17.40765 -16.29413 -15.87255 -15.30854 -14.88620 -14.41052 -14.34672 -13.83910 -13.74826 -13.69144 -12.91109 -12.62685 -12.42563 -12.41385 -12.07891 -12.04249 -11.79680 -11.44851 -11.29414 -10.98700 -10.89978 -10.78825 -10.36612 -10.03788 -9.86173 -9.19146 -8.88360 -8.75535 -8.56012 -8.51959 -6.13590 -4.14418 0.80310 1.22958 2.07916 2.89014 3.20372 3.25649 3.29908 3.89885 4.32560 4.52682 4.68628 4.81162 5.05876 5.15477 5.24056 5.40844 5.42997 5.52648 5.74016 5.78869 5.79413 5.87466 5.92256 6.01903 6.29551 6.32149 6.35962 6.45342 6.49873 6.67966 6.74205 6.96744 7.15325 7.54861 8.32931 8.51367 9.01057 9.45727 10.99336 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026904 B = 0.005720 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.505342 B = 4894.044924 C = 5233.184112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.109 4.109 3 C -0.020 4.020 4 H 0.053 0.947 5 C -0.509 4.509 6 H 0.087 0.913 7 C 0.075 3.925 8 N -0.892 5.892 9 Si 0.866 3.134 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.261 1.261 13 C 0.402 3.598 14 O -0.445 6.445 15 C -0.148 4.148 16 C -0.066 4.066 17 C -0.127 4.127 18 C -0.059 4.059 19 C -0.120 4.120 20 C -0.053 4.053 21 Cl -0.073 7.073 22 C -0.058 4.058 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.266 0.734 29 H 0.146 0.854 30 H 0.134 0.866 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.558 3.950 3.832 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.147 4.147 3 C -0.039 4.039 4 H 0.071 0.929 5 C -0.546 4.546 6 H 0.105 0.895 7 C -0.128 4.128 8 N -0.529 5.529 9 Si 0.693 3.307 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.186 1.186 13 C 0.278 3.722 14 O -0.318 6.318 15 C -0.149 4.149 16 C -0.084 4.084 17 C -0.145 4.145 18 C -0.060 4.060 19 C -0.177 4.177 20 C -0.079 4.079 21 Cl -0.044 7.044 22 C -0.077 4.077 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.163 0.837 30 H 0.152 0.848 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.001 4.040 4.326 18.950 hybrid contribution -0.513 0.325 -0.831 1.029 sum -18.515 4.364 3.495 19.341 Atomic orbital electron populations 1.22333 0.98256 1.00884 1.00961 1.21708 0.92638 0.97916 1.02438 1.19598 0.99254 0.93252 0.91821 0.92921 1.20836 0.87812 1.50342 0.95646 0.89513 1.25033 0.94845 0.94484 0.98423 1.69882 1.09824 1.49191 1.24015 0.87015 0.81418 0.79289 0.82975 1.19915 1.21140 1.18580 1.23130 0.83092 0.75538 0.90441 1.90402 1.50715 1.48931 1.41779 1.21106 0.98185 1.01617 0.94019 1.21957 0.92514 0.94847 0.99100 1.20960 0.97308 0.99504 0.96755 1.19922 0.95995 0.97605 0.92510 1.20900 0.92586 1.00719 1.03445 1.20663 0.95882 1.02967 0.88404 1.98341 1.92734 1.80110 1.33260 1.21356 0.94215 0.93937 0.98160 0.93494 0.92778 0.92992 0.91402 0.92308 0.92435 0.83654 0.84780 0.90550 0.91002 0.90811 0.84027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 8.25 37.16 0.31 -2.29 16 2 C -0.11 -2.15 5.37 -26.73 -0.14 -2.29 16 3 C -0.02 -0.45 1.42 -92.93 -0.13 -0.58 16 4 H 0.05 1.13 3.89 -51.93 -0.20 0.93 16 5 C -0.51 -14.18 8.55 -34.44 -0.29 -14.47 16 6 H 0.09 2.75 7.51 -52.49 -0.39 2.35 16 7 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 8 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 9 Si 0.87 20.17 26.98 -169.99 -4.59 15.59 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.26 -5.52 6.82 56.52 0.39 -5.14 16 13 C 0.40 8.66 5.90 -30.68 -0.18 8.48 16 14 O -0.44 -10.92 15.93 5.58 0.09 -10.83 16 15 C -0.15 -2.58 4.94 -105.07 -0.52 -3.09 16 16 C -0.07 -0.97 7.07 -39.10 -0.28 -1.25 16 17 C -0.13 -1.52 9.68 -39.65 -0.38 -1.91 16 18 C -0.06 -0.71 5.89 -104.47 -0.62 -1.33 16 19 C -0.12 -1.06 9.60 36.00 0.35 -0.71 16 20 C -0.05 -0.72 6.31 -39.56 -0.25 -0.97 16 21 Cl -0.07 -0.89 27.27 -51.86 -1.41 -2.30 16 22 C -0.06 -0.93 9.38 -39.07 -0.37 -1.30 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.82 5.29 -51.93 -0.27 0.54 16 25 H 0.05 0.73 6.54 -51.92 -0.34 0.40 16 26 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.15 2.08 4.25 -52.48 -0.22 1.86 16 30 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 33 H 0.07 0.64 6.88 -51.93 -0.36 0.28 16 34 H 0.14 2.32 7.65 -52.49 -0.40 1.92 16 LS Contribution 292.00 15.07 4.40 4.40 Total: -1.00 -30.60 292.00 -7.22 -37.82 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -3.88 Total: 1.13 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -2.61 Total: -19.71 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.77 Total: -26.10 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.59 Total: 15.59 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.41 Total: -2.30 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.60 -7.22 -37.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234028253.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.314 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds