Wall clock time and date at job start Mon Mar 30 2020 07:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47091 * 2 1 4 4 H 1.09006 * 109.47397 * 305.91320 * 3 2 1 5 5 C 1.50695 * 109.47254 * 185.91118 * 3 2 1 6 6 H 1.07997 * 120.00416 * 275.19503 * 5 3 2 7 7 C 1.37880 * 120.00312 * 95.19145 * 5 3 2 8 8 N 1.31508 * 120.00350 * 184.64493 * 7 5 3 9 9 Si 1.86802 * 119.99511 * 4.64551 * 7 5 3 10 10 H 1.48504 * 109.46929 * 84.86105 * 9 7 5 11 11 H 1.48505 * 109.47045 * 204.85522 * 9 7 5 12 12 H 1.48495 * 109.47147 * 324.85878 * 9 7 5 13 13 C 1.50700 * 109.47206 * 65.91260 * 3 2 1 14 14 O 1.21251 * 120.00030 * 94.99481 * 13 3 2 15 15 C 1.47171 * 120.00058 * 275.00023 * 13 3 2 16 16 C 1.39875 * 120.16518 * 359.71860 * 15 13 3 17 17 C 1.37869 * 119.85493 * 180.29744 * 16 15 13 18 18 C 1.38409 * 120.18580 * 359.97438 * 17 16 15 19 19 C 1.50693 * 119.83012 * 179.97438 * 18 17 16 20 20 C 1.38489 * 120.33436 * 0.02562 * 18 17 16 21 21 Cl 1.73605 * 119.92745 * 179.97438 * 20 18 17 22 22 C 1.38039 * 120.14790 * 0.02562 * 20 18 17 23 23 H 1.08997 * 109.47520 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46981 * 300.00149 * 1 2 3 25 25 H 1.09009 * 109.47159 * 59.99606 * 1 2 3 26 26 H 1.08997 * 109.47202 * 240.00357 * 2 1 3 27 27 H 1.08996 * 109.47139 * 120.00091 * 2 1 3 28 28 H 0.97002 * 120.00558 * 180.02562 * 8 7 5 29 29 H 1.08005 * 120.07052 * 0.25857 * 16 15 13 30 30 H 1.07998 * 119.90771 * 179.97438 * 17 16 15 31 31 H 1.09003 * 109.47396 * 270.02340 * 19 18 17 32 32 H 1.08996 * 109.47375 * 30.02116 * 19 18 17 33 33 H 1.08995 * 109.47252 * 150.02752 * 19 18 17 34 34 H 1.08000 * 120.09628 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5928 1.9861 -0.8323 5 6 3.5398 1.4451 -0.1463 6 1 4.1676 1.3294 0.7248 7 6 4.1107 1.5950 -1.3924 8 7 5.4152 1.5060 -1.5331 9 14 3.0311 1.9247 -2.8807 10 1 2.7605 3.3813 -2.9830 11 1 3.7268 1.4631 -4.1089 12 1 1.7479 1.1920 -2.7335 13 6 1.6607 2.1094 1.2971 14 8 2.4490 2.1365 2.2180 15 6 0.3335 2.7277 1.4461 16 6 -0.5764 2.7036 0.3840 17 6 -1.8156 3.2901 0.5285 18 6 -2.1613 3.9018 1.7210 19 6 -3.5178 4.5409 1.8699 20 6 -1.2665 3.9303 2.7776 21 17 -1.7109 4.7009 4.2684 22 6 -0.0216 3.3482 2.6476 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 5.8169 1.6119 -2.4096 29 1 -0.3084 2.2269 -0.5474 30 1 -2.5187 3.2723 -0.2912 31 1 -3.4639 5.5845 1.5597 32 1 -4.2387 4.0132 1.2456 33 1 -3.8321 4.4876 2.9122 34 1 0.6754 3.3705 3.4723 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234028253.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:19 Heat of formation + Delta-G solvation = -50.644214 kcal Electronic energy + Delta-G solvation = -17929.406170 eV Core-core repulsion = 15044.975279 eV Total energy + Delta-G solvation = -2884.430891 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -41.31469 -39.51146 -37.46358 -36.39933 -34.38678 -33.60175 -31.78917 -30.07980 -28.63169 -25.53717 -24.14949 -23.45280 -22.40671 -20.25830 -19.29577 -17.88033 -17.22896 -16.53446 -16.25330 -16.01233 -15.68813 -15.19491 -14.93993 -14.87362 -14.59842 -14.11861 -13.76593 -13.65384 -13.30269 -13.21830 -12.94094 -12.77987 -12.59826 -12.42126 -12.26319 -11.92618 -11.81334 -11.73431 -11.59346 -11.18476 -10.74722 -10.31495 -9.95095 -9.63561 -8.29721 -6.38213 -0.39944 0.15209 1.05356 1.35577 1.38321 1.48470 1.51769 2.35442 2.65424 3.00014 3.21846 3.70471 3.83223 3.99208 4.16996 4.28311 4.33604 4.41030 4.50178 4.66787 4.69144 4.73619 4.80150 4.83881 5.09358 5.17410 5.19620 5.23678 5.28684 5.33366 5.38366 5.51310 5.63436 5.73537 6.25207 6.71493 6.79004 7.26369 8.87926 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026904 B = 0.005720 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.505342 B = 4894.044924 C = 5233.184112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.107 4.107 3 C -0.023 4.023 4 H 0.075 0.925 5 C -0.523 4.523 6 H 0.021 0.979 7 C 0.008 3.992 8 N -0.950 5.950 9 Si 0.939 3.061 10 H -0.261 1.261 11 H -0.286 1.286 12 H -0.216 1.216 13 C 0.401 3.599 14 O -0.500 6.500 15 C -0.175 4.175 16 C -0.063 4.063 17 C -0.113 4.113 18 C -0.044 4.044 19 C -0.121 4.121 20 C -0.061 4.061 21 Cl -0.062 7.062 22 C -0.070 4.070 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.268 0.732 29 H 0.155 0.845 30 H 0.180 0.820 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.923 4.784 1.610 24.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.145 4.145 3 C -0.042 4.042 4 H 0.093 0.907 5 C -0.561 4.561 6 H 0.039 0.961 7 C -0.188 4.188 8 N -0.590 5.590 9 Si 0.760 3.240 10 H -0.186 1.186 11 H -0.212 1.212 12 H -0.138 1.138 13 C 0.281 3.719 14 O -0.377 6.377 15 C -0.176 4.176 16 C -0.081 4.081 17 C -0.130 4.130 18 C -0.045 4.045 19 C -0.177 4.177 20 C -0.088 4.088 21 Cl -0.033 7.033 22 C -0.089 4.089 23 H 0.088 0.912 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.173 0.827 30 H 0.197 0.803 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -23.406 4.867 2.124 24.001 hybrid contribution 1.164 0.102 0.009 1.169 sum -22.242 4.969 2.133 22.890 Atomic orbital electron populations 1.22259 0.93940 1.02962 1.02346 1.21581 0.96400 0.95296 1.01243 1.19622 0.95586 0.95602 0.93381 0.90686 1.20997 0.90734 1.50506 0.93839 0.96067 1.26128 0.96454 0.93811 1.02453 1.70081 1.12626 1.51118 1.25137 0.85862 0.80851 0.80182 0.77140 1.18616 1.21169 1.13762 1.23356 0.84719 0.74562 0.89279 1.90381 1.52899 1.51278 1.43159 1.20617 0.96632 1.04224 0.96129 1.22081 0.92945 0.94901 0.98181 1.21410 0.96582 0.97338 0.97710 1.20425 0.96783 0.95737 0.91559 1.21033 0.90854 1.01522 1.04285 1.20756 0.95347 1.02954 0.89699 1.98345 1.92458 1.79768 1.32736 1.21240 0.95265 0.94987 0.97452 0.91176 0.92544 0.90381 0.91838 0.94523 0.92322 0.82746 0.80264 0.89128 0.88203 0.90800 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.33 8.25 71.98 0.59 -3.74 16 2 C -0.11 -4.17 5.37 30.59 0.16 -4.01 16 3 C -0.02 -1.03 1.42 -12.29 -0.02 -1.05 16 4 H 0.08 3.04 3.89 -2.38 -0.01 3.04 16 5 C -0.52 -30.96 8.55 25.60 0.22 -30.74 16 6 H 0.02 1.48 7.51 -2.91 -0.02 1.45 16 7 C 0.01 0.49 5.47 84.66 0.46 0.95 16 8 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 9 Si 0.94 40.79 26.98 68.60 1.85 42.64 16 10 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.22 -7.74 6.82 99.48 0.68 -7.06 16 13 C 0.40 17.97 5.90 28.03 0.17 18.13 16 14 O -0.50 -26.74 15.93 -2.94 -0.05 -26.79 16 15 C -0.17 -5.97 4.94 -20.15 -0.10 -6.07 16 16 C -0.06 -1.60 7.07 22.58 0.16 -1.44 16 17 C -0.11 -2.05 9.68 22.22 0.22 -1.83 16 18 C -0.04 -0.86 5.89 -19.77 -0.12 -0.97 16 19 C -0.12 -1.46 9.60 71.23 0.68 -0.77 16 20 C -0.06 -1.54 6.31 22.28 0.14 -1.40 16 21 Cl -0.06 -1.40 27.27 -2.72 -0.07 -1.47 16 22 C -0.07 -2.26 9.38 22.60 0.21 -2.05 16 23 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.06 1.54 5.29 -2.39 -0.01 1.53 16 25 H 0.08 1.75 6.54 -2.38 -0.02 1.74 16 26 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.27 15.75 8.31 -92.71 -0.77 14.97 16 29 H 0.16 3.59 4.25 -2.91 -0.01 3.58 16 30 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 0.73 8.08 -2.39 -0.02 0.71 16 33 H 0.07 0.94 6.88 -2.39 -0.02 0.92 16 34 H 0.12 4.27 7.65 -2.91 -0.02 4.25 16 Total: -1.00 -75.07 292.00 5.90 -69.16 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 1.09 Total: 11.53 kcal Atomic # 6 Polarization: -37.77 SS G_CDS: 2.78 Total: -34.98 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 0.30 Total: -60.09 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.05 Total: -26.79 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.85 Total: 42.64 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.07 Total: -1.47 kcal Total: -75.07 5.90 -69.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234028253.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.518 kcal (2) G-P(sol) polarization free energy of solvation -75.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds