Wall clock time and date at job start Mon Mar 30 2020 07:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47238 * 2 1 4 4 H 1.09003 * 109.46989 * 305.00110 * 3 2 1 5 5 C 1.50697 * 109.47260 * 185.00028 * 3 2 1 6 6 H 1.08002 * 120.00097 * 239.99379 * 5 3 2 7 7 C 1.37876 * 120.00049 * 60.00097 * 5 3 2 8 8 N 1.31511 * 120.00007 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99917 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46916 * 59.99650 * 9 7 5 11 11 H 1.48502 * 109.46928 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46988 * 299.99762 * 9 7 5 13 13 C 1.50697 * 109.46992 * 64.99816 * 3 2 1 14 14 O 1.21264 * 120.00278 * 95.00815 * 13 3 2 15 15 C 1.47098 * 119.99954 * 275.00164 * 13 3 2 16 16 C 1.39915 * 120.15715 * 353.60694 * 15 13 3 17 17 C 1.37798 * 119.83587 * 179.97438 * 16 15 13 18 18 C 1.38582 * 120.15901 * 0.26959 * 17 16 15 19 19 Cl 1.73605 * 119.83880 * 179.72713 * 18 17 16 20 20 C 1.38545 * 120.32065 * 359.45454 * 18 17 16 21 21 C 1.37835 * 120.15806 * 0.54582 * 20 18 17 22 22 C 1.50700 * 120.08004 * 179.70293 * 21 20 18 23 23 H 1.08992 * 109.47036 * 60.00292 * 1 2 3 24 24 H 1.09007 * 109.46631 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47098 * 299.99599 * 1 2 3 26 26 H 1.08997 * 109.47258 * 239.99663 * 2 1 3 27 27 H 1.09001 * 109.47259 * 119.99584 * 2 1 3 28 28 H 0.97001 * 120.00042 * 180.02562 * 8 7 5 29 29 H 1.08003 * 120.08196 * 359.95188 * 16 15 13 30 30 H 1.07996 * 119.91365 * 179.97438 * 17 16 15 31 31 H 1.08006 * 119.92169 * 180.27716 * 20 18 17 32 32 H 1.08997 * 109.47435 * 263.23904 * 22 21 20 33 33 H 1.09001 * 109.47426 * 23.24102 * 22 21 20 34 34 H 1.09007 * 109.46858 * 143.23649 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1728 9 14 6.0050 0.8813 -1.3818 10 1 6.5975 0.1474 -0.2349 11 1 6.3979 0.2167 -2.6504 12 1 6.4994 2.2816 -1.3822 13 6 1.6413 2.1162 1.2877 14 8 2.4157 2.1484 2.2202 15 6 0.3127 2.7349 1.4133 16 6 -0.5318 2.8184 0.3009 17 6 -1.7753 3.3989 0.4262 18 6 -2.1877 3.9042 1.6489 19 17 -3.7532 4.6402 1.7957 20 6 -1.3590 3.8200 2.7560 21 6 -0.1126 3.2420 2.6456 22 6 0.7900 3.1573 3.8494 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8293 -0.0618 -2.9495 29 1 -0.2098 2.4292 -0.6537 30 1 -2.4280 3.4643 -0.4317 31 1 -1.6888 4.2120 3.7068 32 1 1.4924 3.9907 3.8363 33 1 0.1894 3.2027 4.7579 34 1 1.3411 2.2172 3.8248 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234028301.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:03 Heat of formation + Delta-G solvation = -32.389233 kcal Electronic energy + Delta-G solvation = -18047.950941 eV Core-core repulsion = 15164.311646 eV Total energy + Delta-G solvation = -2883.639296 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.97276 -37.84025 -36.38824 -34.66952 -32.50385 -31.87515 -30.46941 -27.96263 -26.92227 -24.20639 -22.94603 -22.06746 -20.56969 -18.70022 -16.79423 -16.28106 -15.77433 -15.39540 -14.81473 -14.48229 -14.13107 -13.56402 -13.16367 -13.11419 -12.74304 -12.69719 -12.30542 -12.13164 -12.02766 -11.57123 -11.35655 -11.31451 -11.13709 -10.91160 -10.78359 -10.70032 -10.16566 -9.98953 -9.81340 -9.01879 -8.75086 -8.51273 -8.48481 -8.23151 -6.08216 -4.13470 0.85998 1.40265 2.07422 3.00245 3.31675 3.35141 3.39975 3.97999 4.38199 4.79128 4.88757 4.90276 5.22749 5.25887 5.39256 5.59735 5.82014 5.92544 5.99329 6.09512 6.13010 6.17185 6.26345 6.32990 6.40755 6.48273 6.75747 6.83083 6.86592 6.91003 7.10380 7.49208 7.73752 7.95096 8.19870 8.57801 8.91345 9.51467 10.97991 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.030530 B = 0.005210 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.905365 B = 5372.523154 C = 5796.695051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.109 4.109 3 C 0.013 3.987 4 H 0.052 0.948 5 C -0.508 4.508 6 H 0.067 0.933 7 C 0.063 3.937 8 N -0.892 5.892 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.397 3.603 14 O -0.454 6.454 15 C -0.152 4.152 16 C -0.050 4.050 17 C -0.137 4.137 18 C -0.012 4.012 19 Cl -0.079 7.079 20 C -0.133 4.133 21 C -0.025 4.025 22 C -0.120 4.120 23 H 0.050 0.950 24 H 0.038 0.962 25 H 0.040 0.960 26 H 0.105 0.895 27 H 0.037 0.963 28 H 0.262 0.738 29 H 0.151 0.849 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.490 4.998 5.710 13.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.147 4.147 3 C -0.006 4.006 4 H 0.070 0.930 5 C -0.546 4.546 6 H 0.085 0.915 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.725 3.275 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.275 3.725 14 O -0.329 6.329 15 C -0.154 4.154 16 C -0.068 4.068 17 C -0.155 4.155 18 C -0.038 4.038 19 Cl -0.050 7.050 20 C -0.152 4.152 21 C -0.026 4.026 22 C -0.176 4.176 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.124 0.876 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.169 0.831 30 H 0.153 0.847 31 H 0.150 0.850 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.199 4.987 6.039 13.666 hybrid contribution 0.570 0.106 -0.261 0.636 sum -10.629 5.093 5.778 13.126 Atomic orbital electron populations 1.22165 0.99031 1.00046 1.00272 1.21497 0.91644 0.98080 1.03506 1.19164 0.97851 0.93399 0.90193 0.93018 1.21050 0.89976 1.38010 1.05591 0.91482 1.24920 0.98448 0.94997 0.95487 1.69834 1.35100 1.38569 1.09562 0.86559 0.85307 0.78369 0.77257 1.20141 1.21272 1.20204 1.23301 0.83263 0.75052 0.90838 1.90320 1.51935 1.50247 1.40415 1.21112 0.98655 1.02032 0.93561 1.21766 0.91764 0.93780 0.99479 1.20992 0.97448 1.00848 0.96242 1.21114 0.87252 0.99795 0.95680 1.98354 1.26941 1.81479 1.98254 1.20839 0.93852 1.02557 0.97932 1.20219 0.93617 0.93355 0.95391 1.21080 0.98211 1.05290 0.92986 0.93112 0.94274 0.94073 0.87637 0.94376 0.92768 0.83141 0.84748 0.85021 0.90490 0.92602 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 8.33 37.16 0.31 -2.54 16 2 C -0.11 -2.44 5.23 -26.73 -0.14 -2.58 16 3 C 0.01 0.30 1.76 -92.93 -0.16 0.13 16 4 H 0.05 1.24 6.51 -51.93 -0.34 0.90 16 5 C -0.51 -13.75 8.33 -34.44 -0.29 -14.04 16 6 H 0.07 1.89 7.03 -52.49 -0.37 1.52 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.12 11.29 55.43 0.63 -23.50 16 9 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 13 C 0.40 8.54 5.81 -30.72 -0.18 8.36 16 14 O -0.45 -10.52 12.81 5.57 0.07 -10.45 16 15 C -0.15 -2.71 4.68 -105.06 -0.49 -3.21 16 16 C -0.05 -0.78 7.24 -39.11 -0.28 -1.07 16 17 C -0.14 -1.86 9.81 -39.62 -0.39 -2.25 16 18 C -0.01 -0.16 6.33 -39.34 -0.25 -0.41 16 19 Cl -0.08 -0.92 28.95 -51.86 -1.50 -2.42 16 20 C -0.13 -1.82 9.44 -39.62 -0.37 -2.19 16 21 C -0.03 -0.40 5.92 -104.16 -0.62 -1.02 16 22 C -0.12 -1.78 8.72 36.01 0.31 -1.47 16 23 H 0.05 0.86 6.81 -51.93 -0.35 0.51 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.04 0.71 5.49 -51.93 -0.29 0.43 16 26 H 0.11 2.62 5.95 -51.93 -0.31 2.31 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 29 H 0.15 2.38 4.86 -52.48 -0.26 2.13 16 30 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.13 1.51 8.06 -52.48 -0.42 1.08 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.67 8.04 -51.93 -0.42 0.25 16 34 H 0.10 1.66 5.88 -51.92 -0.31 1.35 16 LS Contribution 290.22 15.07 4.37 4.37 Total: -1.00 -27.59 290.22 -7.97 -35.57 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -3.88 Total: 1.03 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -2.64 Total: -20.68 kcal Atomic # 7 Polarization: -24.12 SS G_CDS: 0.63 Total: -23.50 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.59 -7.97 -35.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234028301.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.178 kcal (2) G-P(sol) polarization free energy of solvation -27.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds