Wall clock time and date at job start Mon Mar 30 2020 07:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47238 * 2 1 4 4 H 1.09003 * 109.46989 * 305.00110 * 3 2 1 5 5 C 1.50697 * 109.47260 * 185.00028 * 3 2 1 6 6 H 1.08002 * 120.00097 * 239.99379 * 5 3 2 7 7 C 1.37876 * 120.00049 * 60.00097 * 5 3 2 8 8 N 1.31511 * 120.00007 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99917 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46916 * 59.99650 * 9 7 5 11 11 H 1.48502 * 109.46928 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46988 * 299.99762 * 9 7 5 13 13 C 1.50697 * 109.46992 * 64.99816 * 3 2 1 14 14 O 1.21264 * 120.00278 * 95.00815 * 13 3 2 15 15 C 1.47098 * 119.99954 * 275.00164 * 13 3 2 16 16 C 1.39915 * 120.15715 * 353.60694 * 15 13 3 17 17 C 1.37798 * 119.83587 * 179.97438 * 16 15 13 18 18 C 1.38582 * 120.15901 * 0.26959 * 17 16 15 19 19 Cl 1.73605 * 119.83880 * 179.72713 * 18 17 16 20 20 C 1.38545 * 120.32065 * 359.45454 * 18 17 16 21 21 C 1.37835 * 120.15806 * 0.54582 * 20 18 17 22 22 C 1.50700 * 120.08004 * 179.70293 * 21 20 18 23 23 H 1.08992 * 109.47036 * 60.00292 * 1 2 3 24 24 H 1.09007 * 109.46631 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47098 * 299.99599 * 1 2 3 26 26 H 1.08997 * 109.47258 * 239.99663 * 2 1 3 27 27 H 1.09001 * 109.47259 * 119.99584 * 2 1 3 28 28 H 0.97001 * 120.00042 * 180.02562 * 8 7 5 29 29 H 1.08003 * 120.08196 * 359.95188 * 16 15 13 30 30 H 1.07996 * 119.91365 * 179.97438 * 17 16 15 31 31 H 1.08006 * 119.92169 * 180.27716 * 20 18 17 32 32 H 1.08997 * 109.47435 * 263.23904 * 22 21 20 33 33 H 1.09001 * 109.47426 * 23.24102 * 22 21 20 34 34 H 1.09007 * 109.46858 * 143.23649 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1728 9 14 6.0050 0.8813 -1.3818 10 1 6.5975 0.1474 -0.2349 11 1 6.3979 0.2167 -2.6504 12 1 6.4994 2.2816 -1.3822 13 6 1.6413 2.1162 1.2877 14 8 2.4157 2.1484 2.2202 15 6 0.3127 2.7349 1.4133 16 6 -0.5318 2.8184 0.3009 17 6 -1.7753 3.3989 0.4262 18 6 -2.1877 3.9042 1.6489 19 17 -3.7532 4.6402 1.7957 20 6 -1.3590 3.8200 2.7560 21 6 -0.1126 3.2420 2.6456 22 6 0.7900 3.1573 3.8494 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8293 -0.0618 -2.9495 29 1 -0.2098 2.4292 -0.6537 30 1 -2.4280 3.4643 -0.4317 31 1 -1.6888 4.2120 3.7068 32 1 1.4924 3.9907 3.8363 33 1 0.1894 3.2027 4.7579 34 1 1.3411 2.2172 3.8248 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234028301.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:02 Heat of formation + Delta-G solvation = -45.436995 kcal Electronic energy + Delta-G solvation = -18048.516735 eV Core-core repulsion = 15164.311646 eV Total energy + Delta-G solvation = -2884.205089 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.36769 -39.25795 -37.44424 -36.45937 -34.00233 -33.43743 -31.79943 -29.69992 -28.20085 -25.92195 -24.42515 -23.46625 -21.96117 -20.30558 -18.50191 -17.82683 -17.16907 -16.76484 -16.47168 -16.13416 -15.51878 -15.08016 -14.54103 -14.48098 -14.21162 -14.01469 -13.76373 -13.49520 -13.32947 -13.16842 -13.04644 -12.76748 -12.53457 -12.44488 -12.31613 -12.05225 -11.87060 -11.69507 -11.53587 -10.96354 -10.49695 -10.00491 -9.83625 -9.67832 -8.13583 -6.25425 -0.40887 0.26733 1.02881 1.41056 1.41860 1.49458 1.55166 2.41802 2.67768 3.14223 3.36059 3.71444 3.79677 4.13085 4.24058 4.41059 4.51895 4.54102 4.61266 4.71547 4.77543 4.83585 4.91329 5.02968 5.12493 5.15437 5.22356 5.29139 5.35559 5.55020 5.60559 5.71871 5.75739 5.99496 6.26688 6.78107 6.91897 7.41575 8.90545 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.030530 B = 0.005210 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.905365 B = 5372.523154 C = 5796.695051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C 0.007 3.993 4 H 0.046 0.954 5 C -0.535 4.535 6 H 0.045 0.955 7 C 0.024 3.976 8 N -0.906 5.906 9 Si 0.950 3.050 10 H -0.278 1.278 11 H -0.276 1.276 12 H -0.274 1.274 13 C 0.397 3.603 14 O -0.483 6.483 15 C -0.178 4.178 16 C -0.052 4.052 17 C -0.129 4.129 18 C -0.006 4.006 19 Cl -0.055 7.055 20 C -0.126 4.126 21 C -0.030 4.030 22 C -0.117 4.117 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.079 0.921 27 H 0.019 0.981 28 H 0.265 0.735 29 H 0.145 0.855 30 H 0.161 0.839 31 H 0.160 0.840 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.679 5.912 6.030 16.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.141 4.141 3 C -0.012 4.012 4 H 0.064 0.936 5 C -0.573 4.573 6 H 0.063 0.937 7 C -0.175 4.175 8 N -0.545 5.545 9 Si 0.775 3.225 10 H -0.204 1.204 11 H -0.201 1.201 12 H -0.200 1.200 13 C 0.278 3.722 14 O -0.362 6.362 15 C -0.179 4.179 16 C -0.070 4.070 17 C -0.148 4.148 18 C -0.033 4.033 19 Cl -0.026 7.026 20 C -0.144 4.144 21 C -0.031 4.031 22 C -0.173 4.173 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.162 0.838 30 H 0.179 0.821 31 H 0.177 0.823 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.405 5.903 6.349 15.964 hybrid contribution 1.153 -0.122 -0.349 1.211 sum -12.252 5.780 6.000 14.816 Atomic orbital electron populations 1.22027 0.95453 1.01481 1.01279 1.21315 0.94809 0.96733 1.01212 1.19135 0.96031 0.94447 0.91538 0.93633 1.21272 0.92071 1.38522 1.05407 0.93676 1.25538 1.02119 0.94663 0.95223 1.69920 1.36305 1.38583 1.09686 0.85742 0.80962 0.78353 0.77393 1.20384 1.20062 1.19971 1.23233 0.84904 0.74653 0.89428 1.90308 1.53346 1.51625 1.40876 1.20755 0.97108 1.04470 0.95539 1.21709 0.92485 0.94293 0.98556 1.21212 0.96633 0.99549 0.97375 1.21259 0.88036 0.98598 0.95388 1.98373 1.25169 1.80890 1.98183 1.21061 0.92623 1.01425 0.99292 1.20320 0.94665 0.93417 0.94679 1.21021 0.98378 1.03566 0.94342 0.91907 0.92588 0.93211 0.90234 0.96165 0.92578 0.83751 0.82136 0.82253 0.90996 0.89251 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 8.33 71.98 0.60 -4.55 16 2 C -0.10 -4.71 5.23 30.59 0.16 -4.55 16 3 C 0.01 0.36 1.76 -12.29 -0.02 0.34 16 4 H 0.05 2.26 6.51 -2.39 -0.02 2.25 16 5 C -0.53 -30.15 8.33 25.60 0.21 -29.93 16 6 H 0.04 2.68 7.03 -2.91 -0.02 2.65 16 7 C 0.02 1.33 5.29 84.65 0.45 1.78 16 8 N -0.91 -49.90 11.29 21.45 0.24 -49.66 16 9 Si 0.95 44.01 29.54 68.60 2.03 46.03 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 13 C 0.40 17.67 5.81 28.01 0.16 17.83 16 14 O -0.48 -23.54 12.81 -2.98 -0.04 -23.58 16 15 C -0.18 -6.27 4.68 -20.15 -0.09 -6.36 16 16 C -0.05 -1.58 7.24 22.57 0.16 -1.41 16 17 C -0.13 -3.12 9.81 22.25 0.22 -2.91 16 18 C -0.01 -0.14 6.33 22.43 0.14 0.00 16 19 Cl -0.06 -1.07 28.95 -2.72 -0.08 -1.14 16 20 C -0.13 -3.02 9.44 22.25 0.21 -2.81 16 21 C -0.03 -0.91 5.92 -19.56 -0.12 -1.03 16 22 C -0.12 -3.40 8.72 71.24 0.62 -2.78 16 23 H 0.06 2.06 6.81 -2.39 -0.02 2.04 16 24 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 25 H 0.05 1.68 5.49 -2.39 -0.01 1.66 16 26 H 0.08 4.07 5.95 -2.39 -0.01 4.05 16 27 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 29 H 0.14 4.49 4.86 -2.91 -0.01 4.48 16 30 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 31 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.09 1.93 8.04 -2.39 -0.02 1.91 16 34 H 0.07 2.43 5.88 -2.38 -0.01 2.42 16 Total: -1.00 -60.94 290.22 5.98 -54.97 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 1.12 Total: 9.77 kcal Atomic # 6 Polarization: -39.10 SS G_CDS: 2.71 Total: -36.39 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.24 Total: -49.66 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.04 Total: -23.58 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.14 kcal Total: -60.94 5.98 -54.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234028301.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.530 kcal (2) G-P(sol) polarization free energy of solvation -60.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds