Wall clock time and date at job start Mon Mar 30 2020 07:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99688 * 2 1 4 4 H 1.48498 * 109.47128 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47042 * 120.00336 * 3 2 1 6 6 H 1.48503 * 109.47156 * 240.00505 * 3 2 1 7 7 C 1.38810 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99375 * 179.97438 * 7 2 1 9 9 N 1.36928 * 119.99856 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00150 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.27011 * 325.70123 * 10 9 7 12 12 C 1.54597 * 110.31042 * 87.78511 * 10 9 7 13 13 C 1.55191 * 102.80163 * 96.98024 * 12 10 9 14 14 N 1.48536 * 103.23563 * 37.43732 * 13 12 10 15 15 C 1.39738 * 111.00073 * 200.25206 * 14 13 12 16 16 C 1.38893 * 120.06357 * 242.90095 * 15 14 13 17 17 C 1.38114 * 119.93952 * 179.72120 * 16 15 14 18 18 C 1.38376 * 120.05906 * 0.55959 * 17 16 15 19 19 Cl 1.73601 * 119.93888 * 179.70159 * 18 17 16 20 20 C 1.38386 * 120.12341 * 359.72019 * 18 17 16 21 21 C 1.38109 * 120.06076 * 0.02562 * 20 18 17 22 22 C 1.47904 * 105.82015 * 320.76825 * 14 13 12 23 23 H 0.96994 * 119.99491 * 180.02562 * 1 2 3 24 24 H 0.96999 * 120.00747 * 359.97438 * 9 7 2 25 25 H 1.08994 * 110.72670 * 215.32094 * 12 10 9 26 26 H 1.09001 * 110.72018 * 338.60816 * 12 10 9 27 27 H 1.08998 * 110.68627 * 278.99073 * 13 12 10 28 28 H 1.09003 * 110.64337 * 155.86044 * 13 12 10 29 29 H 1.08007 * 120.03000 * 359.97438 * 16 15 14 30 30 H 1.08000 * 119.97286 * 180.25786 * 17 16 15 31 31 H 1.08002 * 119.96634 * 179.97438 * 20 18 17 32 32 H 1.08005 * 120.02585 * 180.02562 * 21 20 18 33 33 H 1.08994 * 109.91795 * 265.97581 * 22 14 13 34 34 H 1.08998 * 110.07910 * 144.77305 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1040 1.6965 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 7 1.3257 -2.3879 -0.0016 10 6 2.0582 -3.6567 -0.0027 11 1 2.9786 -3.5609 -0.5788 12 6 2.3750 -4.0947 1.4456 13 6 1.2297 -5.0932 1.7613 14 7 1.0363 -5.8071 0.4731 15 6 -0.2235 -6.4092 0.4185 16 6 -0.3309 -7.7907 0.3232 17 6 -1.5774 -8.3835 0.2752 18 6 -2.7186 -7.6017 0.3103 19 17 -4.2837 -8.3496 0.2419 20 6 -2.6145 -6.2246 0.3993 21 6 -1.3706 -5.6268 0.4530 22 6 1.1795 -4.7807 -0.5821 23 1 -0.4849 -0.8400 0.0004 24 1 0.3557 -2.3881 -0.0016 25 1 3.3445 -4.5904 1.4954 26 1 2.3418 -3.2411 2.1227 27 1 0.3223 -4.5608 2.0460 28 1 1.5310 -5.7885 2.5449 29 1 0.5595 -8.4011 0.2909 30 1 -1.6616 -9.4580 0.2053 31 1 -3.5068 -5.6167 0.4261 32 1 -1.2900 -4.5521 0.5229 33 1 0.2000 -4.3852 -0.8508 34 1 1.6594 -5.2118 -1.4607 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259195733.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:41 Heat of formation + Delta-G solvation = 42.884687 kcal Electronic energy + Delta-G solvation = -17622.443615 eV Core-core repulsion = 14774.361193 eV Total energy + Delta-G solvation = -2848.082422 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -40.21122 -38.00909 -36.46725 -34.52914 -32.04756 -31.18223 -29.86893 -28.32778 -26.97963 -23.42117 -23.22291 -22.41949 -20.55398 -19.89834 -17.61596 -17.37533 -16.24652 -15.94292 -15.00273 -14.75845 -14.41410 -13.77155 -13.69563 -13.60227 -13.42340 -12.97339 -12.53555 -12.14014 -11.79196 -11.47813 -11.39093 -11.29919 -11.03450 -10.96254 -10.74263 -10.65183 -10.28239 -10.00238 -9.26479 -9.14105 -8.97564 -8.60625 -8.41458 -7.12134 -6.16979 -3.17920 0.98835 1.19849 2.01282 3.47802 3.48823 3.51822 3.69312 3.98825 4.62609 4.73534 4.77295 5.00512 5.20718 5.29435 5.30646 5.39996 5.51853 5.57360 5.68828 5.76318 5.82716 5.85469 6.01203 6.05499 6.13542 6.27862 6.29730 6.45366 6.58272 6.63963 6.81322 6.93896 7.42964 7.76093 8.67770 9.13664 10.00116 10.14112 11.30832 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.030138 B = 0.004234 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.822954 B = 6611.309978 C = 7313.674676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.043 4.043 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.333 4.333 8 H 0.066 0.934 9 N -0.731 5.731 10 C 0.174 3.826 11 H 0.061 0.939 12 C -0.145 4.145 13 C 0.045 3.955 14 N -0.487 5.487 15 C 0.097 3.903 16 C -0.088 4.088 17 C -0.107 4.107 18 C -0.044 4.044 19 Cl -0.079 7.079 20 C -0.099 4.099 21 C -0.136 4.136 22 C 0.030 3.970 23 H 0.253 0.747 24 H 0.364 0.636 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.137 0.863 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.054 0.946 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.790 -16.667 1.524 16.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.241 4.241 3 Si 0.910 3.090 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.464 4.464 8 H 0.084 0.916 9 N -0.374 5.374 10 C 0.063 3.937 11 H 0.079 0.921 12 C -0.186 4.186 13 C -0.081 4.081 14 N -0.209 5.209 15 C 0.003 3.997 16 C -0.108 4.108 17 C -0.126 4.126 18 C -0.070 4.070 19 Cl -0.050 7.050 20 C -0.118 4.118 21 C -0.156 4.156 22 C -0.097 4.097 23 H 0.064 0.936 24 H 0.198 0.802 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.073 0.927 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.457 -15.433 1.430 15.692 hybrid contribution -0.905 -1.149 0.101 1.466 sum -3.362 -16.582 1.531 16.988 Atomic orbital electron populations 1.70907 1.06078 1.28284 1.53449 1.25787 0.96999 1.01042 1.00222 0.83245 0.74242 0.75567 0.75918 1.21034 1.22212 1.22193 1.20044 0.92116 0.85629 1.48624 0.91558 1.42533 1.04537 1.00720 1.89589 1.20971 0.94394 0.85140 0.93221 0.92077 1.23294 0.96589 0.97989 1.00763 1.23322 0.99058 0.95342 0.90354 1.62552 1.24426 1.29362 1.04572 1.19265 0.89210 0.93542 0.97712 1.20970 0.96994 0.93518 0.99273 1.20966 0.90721 1.00034 1.00915 1.20911 0.86250 0.93190 1.06652 1.98357 1.27195 1.82499 1.96934 1.20951 0.98408 0.92575 0.99911 1.21802 0.92316 1.01120 1.00338 1.23405 1.00543 0.91432 0.94284 0.93557 0.80221 0.91890 0.90106 0.93356 0.90654 0.84476 0.84865 0.84976 0.84843 0.92724 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.57 13.70 55.49 0.76 -27.81 16 2 C -0.04 -1.22 5.50 -17.43 -0.10 -1.31 16 3 Si 1.08 25.46 29.92 -169.99 -5.09 20.37 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.33 -9.10 9.96 -15.06 -0.15 -9.25 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.73 -17.63 5.11 -52.11 -0.27 -17.89 16 10 C 0.17 3.39 3.63 -66.57 -0.24 3.15 16 11 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 12 C -0.15 -2.53 6.80 -24.73 -0.17 -2.70 16 13 C 0.04 0.70 6.44 -1.76 -0.01 0.69 16 14 N -0.49 -7.40 5.28 -167.00 -0.88 -8.28 16 15 C 0.10 1.38 4.86 -83.77 -0.41 0.97 16 16 C -0.09 -1.07 9.97 -39.38 -0.39 -1.46 16 17 C -0.11 -1.19 9.82 -39.58 -0.39 -1.58 16 18 C -0.04 -0.52 6.32 -39.48 -0.25 -0.77 16 19 Cl -0.08 -0.86 28.95 -51.86 -1.50 -2.36 16 20 C -0.10 -1.27 9.82 -39.57 -0.39 -1.66 16 21 C -0.14 -1.93 7.90 -39.39 -0.31 -2.24 16 22 C 0.03 0.51 6.26 -2.76 -0.02 0.49 16 23 H 0.25 7.55 6.77 -40.82 -0.28 7.27 16 24 H 0.36 9.07 6.34 -40.82 -0.26 8.81 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.08 1.58 8.05 -51.93 -0.42 1.16 16 27 H 0.05 0.80 7.03 -51.93 -0.36 0.44 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 30 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.13 2.06 7.04 -52.48 -0.37 1.69 16 33 H 0.05 0.97 5.77 -51.93 -0.30 0.67 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 297.10 15.07 4.48 4.48 Total: -1.00 -29.48 297.10 -9.47 -38.95 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -4.15 Total: 8.21 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -2.82 Total: -15.67 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.39 Total: -53.98 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.09 Total: 20.37 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.48 -9.47 -38.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259195733.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.832 kcal (2) G-P(sol) polarization free energy of solvation -29.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds