Wall clock time and date at job start Mon Mar 30 2020 07:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99688 * 2 1 4 4 H 1.48498 * 109.47128 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47042 * 120.00336 * 3 2 1 6 6 H 1.48503 * 109.47156 * 240.00505 * 3 2 1 7 7 C 1.38810 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99375 * 179.97438 * 7 2 1 9 9 N 1.36928 * 119.99856 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00150 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.27011 * 325.70123 * 10 9 7 12 12 C 1.54597 * 110.31042 * 87.78511 * 10 9 7 13 13 C 1.55191 * 102.80163 * 96.98024 * 12 10 9 14 14 N 1.48536 * 103.23563 * 37.43732 * 13 12 10 15 15 C 1.39738 * 111.00073 * 200.25206 * 14 13 12 16 16 C 1.38893 * 120.06357 * 242.90095 * 15 14 13 17 17 C 1.38114 * 119.93952 * 179.72120 * 16 15 14 18 18 C 1.38376 * 120.05906 * 0.55959 * 17 16 15 19 19 Cl 1.73601 * 119.93888 * 179.70159 * 18 17 16 20 20 C 1.38386 * 120.12341 * 359.72019 * 18 17 16 21 21 C 1.38109 * 120.06076 * 0.02562 * 20 18 17 22 22 C 1.47904 * 105.82015 * 320.76825 * 14 13 12 23 23 H 0.96994 * 119.99491 * 180.02562 * 1 2 3 24 24 H 0.96999 * 120.00747 * 359.97438 * 9 7 2 25 25 H 1.08994 * 110.72670 * 215.32094 * 12 10 9 26 26 H 1.09001 * 110.72018 * 338.60816 * 12 10 9 27 27 H 1.08998 * 110.68627 * 278.99073 * 13 12 10 28 28 H 1.09003 * 110.64337 * 155.86044 * 13 12 10 29 29 H 1.08007 * 120.03000 * 359.97438 * 16 15 14 30 30 H 1.08000 * 119.97286 * 180.25786 * 17 16 15 31 31 H 1.08002 * 119.96634 * 179.97438 * 20 18 17 32 32 H 1.08005 * 120.02585 * 180.02562 * 21 20 18 33 33 H 1.08994 * 109.91795 * 265.97581 * 22 14 13 34 34 H 1.08998 * 110.07910 * 144.77305 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1040 1.6965 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 7 1.3257 -2.3879 -0.0016 10 6 2.0582 -3.6567 -0.0027 11 1 2.9786 -3.5609 -0.5788 12 6 2.3750 -4.0947 1.4456 13 6 1.2297 -5.0932 1.7613 14 7 1.0363 -5.8071 0.4731 15 6 -0.2235 -6.4092 0.4185 16 6 -0.3309 -7.7907 0.3232 17 6 -1.5774 -8.3835 0.2752 18 6 -2.7186 -7.6017 0.3103 19 17 -4.2837 -8.3496 0.2419 20 6 -2.6145 -6.2246 0.3993 21 6 -1.3706 -5.6268 0.4530 22 6 1.1795 -4.7807 -0.5821 23 1 -0.4849 -0.8400 0.0004 24 1 0.3557 -2.3881 -0.0016 25 1 3.3445 -4.5904 1.4954 26 1 2.3418 -3.2411 2.1227 27 1 0.3223 -4.5608 2.0460 28 1 1.5310 -5.7885 2.5449 29 1 0.5595 -8.4011 0.2909 30 1 -1.6616 -9.4580 0.2053 31 1 -3.5068 -5.6167 0.4261 32 1 -1.2900 -4.5521 0.5229 33 1 0.2000 -4.3852 -0.8508 34 1 1.6594 -5.2118 -1.4607 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259195733.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:39 Heat of formation + Delta-G solvation = 25.465362 kcal Electronic energy + Delta-G solvation = -17623.198974 eV Core-core repulsion = 14774.361193 eV Total energy + Delta-G solvation = -2848.837781 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.37064 -39.21335 -37.47133 -36.27935 -33.66739 -32.16398 -31.46544 -29.62794 -28.48670 -25.47651 -24.32583 -23.51362 -21.74928 -21.44354 -19.46909 -18.62210 -17.42621 -17.17061 -16.60709 -16.19769 -15.63344 -15.46879 -15.05028 -14.81531 -14.58020 -14.31422 -13.72607 -13.38104 -13.14722 -12.95767 -12.78578 -12.55242 -12.48143 -12.35448 -12.22972 -11.90320 -11.88320 -11.76082 -11.29015 -10.94858 -10.11920 -9.78757 -9.53556 -9.15309 -8.40749 -5.35449 -0.02958 0.21942 1.07787 1.58428 1.67882 1.84048 2.47566 2.67700 2.79681 3.37880 3.62484 3.71468 3.78975 3.83595 4.01653 4.15506 4.22749 4.26190 4.34529 4.47749 4.55339 4.64786 4.85070 4.87274 4.96361 4.98309 5.14795 5.15702 5.28783 5.38792 5.49772 5.58849 5.66764 6.24888 6.46646 7.05901 7.95396 8.07133 9.10647 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.030138 B = 0.004234 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.822954 B = 6611.309978 C = 7313.674676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.103 4.103 3 Si 1.127 2.873 4 H -0.295 1.295 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.330 4.330 8 H 0.069 0.931 9 N -0.743 5.743 10 C 0.164 3.836 11 H 0.057 0.943 12 C -0.136 4.136 13 C 0.051 3.949 14 N -0.474 5.474 15 C 0.076 3.924 16 C -0.081 4.081 17 C -0.097 4.097 18 C -0.045 4.045 19 Cl -0.067 7.067 20 C -0.106 4.106 21 C -0.149 4.149 22 C 0.040 3.960 23 H 0.242 0.758 24 H 0.356 0.644 25 H 0.085 0.915 26 H 0.055 0.945 27 H 0.031 0.969 28 H 0.100 0.900 29 H 0.159 0.841 30 H 0.163 0.837 31 H 0.137 0.863 32 H 0.110 0.890 33 H 0.040 0.960 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.987 -18.761 1.617 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.294 4.294 3 Si 0.951 3.049 4 H -0.221 1.221 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.461 4.461 8 H 0.087 0.913 9 N -0.385 5.385 10 C 0.055 3.945 11 H 0.075 0.925 12 C -0.177 4.177 13 C -0.075 4.075 14 N -0.195 5.195 15 C -0.018 4.018 16 C -0.100 4.100 17 C -0.116 4.116 18 C -0.072 4.072 19 Cl -0.038 7.038 20 C -0.126 4.126 21 C -0.169 4.169 22 C -0.087 4.087 23 H 0.052 0.948 24 H 0.189 0.811 25 H 0.104 0.896 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.118 0.882 29 H 0.176 0.824 30 H 0.181 0.819 31 H 0.155 0.845 32 H 0.128 0.872 33 H 0.058 0.942 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.626 -17.589 1.527 17.729 hybrid contribution -1.193 -0.633 0.068 1.352 sum -2.819 -18.222 1.595 18.507 Atomic orbital electron populations 1.71012 1.07249 1.27695 1.56413 1.27157 0.97037 1.04609 1.00562 0.82640 0.73383 0.71650 0.77188 1.22131 1.20348 1.20332 1.20380 0.92436 0.86835 1.46430 0.91293 1.42692 1.04313 1.01659 1.89831 1.21202 0.94237 0.84267 0.94775 0.92542 1.23121 0.98540 0.97726 0.98288 1.23274 0.97523 0.95329 0.91347 1.62602 1.25300 1.28015 1.03588 1.19381 0.88372 0.94511 0.99559 1.21174 0.98254 0.92482 0.98051 1.21288 0.89805 1.01416 0.99129 1.21040 0.87252 0.92919 1.05944 1.98365 1.26484 1.82117 1.96825 1.21021 0.98048 0.93409 1.00073 1.21654 0.93353 1.00094 1.01796 1.23231 0.99244 0.91071 0.95174 0.94793 0.81147 0.89598 0.92664 0.95105 0.88196 0.82389 0.81899 0.84479 0.87204 0.94211 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.87 13.70 21.65 0.30 -60.57 16 2 C -0.10 -5.90 5.50 84.86 0.47 -5.43 16 3 Si 1.13 51.54 29.92 68.60 2.05 53.59 16 4 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.33 -18.23 9.96 84.03 0.84 -17.39 16 8 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 9 N -0.74 -36.77 5.11 -318.79 -1.63 -38.40 16 10 C 0.16 6.43 3.63 45.87 0.17 6.59 16 11 H 0.06 2.25 8.10 -2.39 -0.02 2.23 16 12 C -0.14 -4.66 6.80 31.89 0.22 -4.44 16 13 C 0.05 1.55 6.44 86.74 0.56 2.10 16 14 N -0.47 -13.76 5.28 -682.25 -3.60 -17.37 16 15 C 0.08 2.06 4.86 38.19 0.19 2.25 16 16 C -0.08 -1.72 9.97 22.40 0.22 -1.50 16 17 C -0.10 -1.85 9.82 22.27 0.22 -1.63 16 18 C -0.04 -0.99 6.32 22.34 0.14 -0.85 16 19 Cl -0.07 -1.32 28.95 -2.72 -0.08 -1.40 16 20 C -0.11 -2.67 9.82 22.27 0.22 -2.45 16 21 C -0.15 -4.28 7.90 22.40 0.18 -4.10 16 22 C 0.04 1.34 6.26 86.44 0.54 1.88 16 23 H 0.24 15.06 6.77 -92.71 -0.63 14.43 16 24 H 0.36 18.61 6.34 -92.71 -0.59 18.02 16 25 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.05 2.18 8.05 -2.39 -0.02 2.16 16 27 H 0.03 1.04 7.03 -2.39 -0.02 1.02 16 28 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 30 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 31 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 32 H 0.11 3.64 7.04 -2.91 -0.02 3.62 16 33 H 0.04 1.46 5.77 -2.39 -0.01 1.44 16 34 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -63.62 297.10 1.66 -61.96 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.66 Total: 27.16 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 3.95 Total: -24.97 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -4.93 Total: -116.34 kcal Atomic # 14 Polarization: 51.54 SS G_CDS: 2.05 Total: 53.59 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -63.62 1.66 -61.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259195733.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.426 kcal (2) G-P(sol) polarization free energy of solvation -63.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds