Wall clock time and date at job start Mon Mar 30 2020 07:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38425 * 122.54253 * 2 1 4 4 C 1.33383 * 114.92174 * 179.73216 * 3 2 1 5 5 S 1.75887 * 109.59638 * 359.97438 * 4 3 2 6 6 C 1.33390 * 122.53568 * 179.71335 * 2 1 3 7 7 C 1.50699 * 125.20296 * 0.24276 * 6 2 1 8 8 H 1.08990 * 110.49169 * 346.25217 * 7 6 2 9 9 C 1.54101 * 110.54491 * 109.11068 * 7 6 2 10 10 N 1.47056 * 103.86280 * 118.59581 * 9 7 6 11 11 C 1.46500 * 125.41034 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47319 * 270.02274 * 11 10 9 13 13 H 1.08005 * 119.99534 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00326 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00063 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00051 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.47297 * 90.00100 * 16 14 12 18 18 H 1.48498 * 109.47286 * 210.00228 * 16 14 12 19 19 H 1.48502 * 109.47168 * 329.99980 * 16 14 12 20 20 C 1.33949 * 109.18163 * 359.97438 * 10 9 7 21 21 O 1.21578 * 123.04261 * 179.97438 * 20 10 9 22 22 N 1.33946 * 113.91251 * 0.02562 * 20 10 9 23 23 H 1.09002 * 109.46881 * 90.02212 * 1 2 3 24 24 H 1.08995 * 109.47054 * 210.02404 * 1 2 3 25 25 H 1.09001 * 109.46829 * 330.02829 * 1 2 3 26 26 H 1.08001 * 122.53506 * 359.70715 * 3 2 1 27 27 H 1.07999 * 125.20481 * 179.97438 * 4 3 2 28 28 H 1.09001 * 110.54968 * 237.18453 * 9 7 6 29 29 H 1.09000 * 110.55483 * 359.97438 * 9 7 6 30 30 H 1.09003 * 109.47343 * 30.01855 * 11 10 9 31 31 H 1.09003 * 109.47444 * 150.02131 * 11 10 9 32 32 H 0.96996 * 119.99724 * 179.97438 * 15 14 12 33 33 H 0.97002 * 125.40926 * 179.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2517 1.1669 0.0000 4 6 3.5737 0.9900 0.0057 5 16 3.9386 -0.7305 0.0122 6 6 2.2244 -1.1245 0.0056 7 6 1.6536 -2.5192 0.0074 8 1 0.5904 -2.4960 0.2462 9 6 1.8908 -3.2024 -1.3534 10 7 2.7239 -4.3680 -1.0220 11 6 3.2276 -5.3522 -1.9831 12 6 2.2295 -6.4725 -2.1248 13 1 1.3120 -6.4534 -1.5554 14 6 2.4877 -7.5217 -2.9812 15 7 3.6053 -7.5452 -3.6742 16 14 1.2509 -8.9106 -3.1562 17 1 0.2918 -8.5854 -4.2422 18 1 1.9645 -10.1702 -3.4867 19 1 0.5132 -9.0803 -1.8786 20 6 2.9499 -4.3863 0.2982 21 8 3.6129 -5.2461 0.8453 22 7 2.3785 -3.3722 0.9610 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3633 0.8903 0.5134 26 1 1.7966 2.1463 -0.0047 27 1 4.3078 1.7821 0.0062 28 1 0.9449 -3.5205 -1.7919 29 1 2.4211 -2.5328 -2.0305 30 1 3.3751 -4.8726 -2.9508 31 1 4.1767 -5.7539 -1.6283 32 1 3.7870 -8.2835 -4.2764 33 1 2.4340 -3.2241 1.9180 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259316586.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:07 Heat of formation + Delta-G solvation = 17.020735 kcal Electronic energy + Delta-G solvation = -17788.738770 eV Core-core repulsion = 14941.578509 eV Total energy + Delta-G solvation = -2847.160261 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.46328 -38.34762 -35.63421 -34.02844 -32.18517 -31.23084 -29.11570 -27.65081 -26.08543 -23.49811 -22.93940 -21.86642 -19.51273 -18.63775 -17.70664 -16.69338 -16.48938 -15.74066 -15.17695 -14.69014 -14.35108 -14.17314 -13.72712 -13.29932 -13.16659 -12.93957 -12.65421 -12.23619 -12.20584 -11.94324 -11.76835 -11.69305 -11.25550 -10.90490 -10.65537 -10.62083 -10.13737 -9.65246 -9.36392 -8.92892 -8.61988 -8.44166 -8.34908 -7.62902 -6.04876 -4.10099 0.90077 1.61384 2.03827 2.56655 3.30791 3.37340 3.39411 3.46635 3.90158 4.39208 4.47704 4.73326 4.80252 4.82239 5.17844 5.25959 5.28536 5.31931 5.41579 5.52424 5.79691 5.80899 5.94372 6.04140 6.19298 6.31471 6.43541 7.22528 7.40403 7.59287 7.68514 7.94538 8.21379 8.43645 8.91555 9.38058 9.57603 11.02798 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.031360 B = 0.004960 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.654219 B = 5643.909335 C = 5847.450771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.099 4.099 3 C -0.134 4.134 4 C -0.222 4.222 5 S 0.134 5.866 6 C -0.193 4.193 7 C 0.194 3.806 8 H 0.104 0.896 9 C 0.103 3.897 10 N -0.610 5.610 11 C 0.277 3.723 12 C -0.530 4.530 13 H 0.059 0.941 14 C 0.061 3.939 15 N -0.895 5.895 16 Si 0.900 3.100 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.693 3.307 21 O -0.586 6.586 22 N -0.748 5.748 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.137 0.863 27 H 0.162 0.838 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.287 19.117 5.839 20.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.165 4.165 4 C -0.358 4.358 5 S 0.400 5.600 6 C -0.312 4.312 7 C 0.085 3.915 8 H 0.121 0.879 9 C -0.023 4.023 10 N -0.348 5.348 11 C 0.159 3.841 12 C -0.569 4.569 13 H 0.077 0.923 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.728 3.272 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 C 0.393 3.607 21 O -0.464 6.464 22 N -0.410 5.410 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.155 0.845 27 H 0.179 0.821 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -3.372 17.544 5.819 18.789 hybrid contribution -1.903 0.367 0.168 1.945 sum -5.275 17.911 5.986 19.608 Atomic orbital electron populations 1.20561 0.89762 1.02660 1.02560 1.18806 0.97385 0.91348 1.03702 1.19985 0.92821 0.99033 1.04627 1.25706 0.99859 0.99972 1.10233 1.84761 1.05072 0.98712 1.71443 1.24756 0.96501 0.98544 1.11382 1.20216 0.96329 0.84496 0.90413 0.87893 1.22290 0.97406 0.88211 0.94343 1.47752 1.53174 1.27293 1.06539 1.19122 0.95214 0.84493 0.85298 1.21493 1.05087 1.05841 1.24484 0.92294 1.24931 0.95647 0.98040 0.95445 1.69931 1.23940 1.32394 1.27133 0.86465 0.81005 0.81437 0.78341 1.20612 1.21059 1.19869 1.15982 0.80254 0.81653 0.82763 1.90905 1.45126 1.39782 1.70572 1.45367 1.57749 1.28398 1.09520 0.90899 0.91348 0.91600 0.84548 0.82086 0.89750 0.90701 0.94574 0.93781 0.92636 0.73882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 9.82 36.01 0.35 -0.41 16 2 C -0.10 -1.04 5.80 -106.25 -0.62 -1.66 16 3 C -0.13 -1.31 9.98 -41.21 -0.41 -1.72 16 4 C -0.22 -2.26 11.23 29.04 0.33 -1.94 16 5 S 0.13 1.72 23.19 -107.50 -2.49 -0.77 16 6 C -0.19 -2.39 5.28 -36.00 -0.19 -2.58 16 7 C 0.19 2.66 4.01 -68.20 -0.27 2.39 16 8 H 0.10 1.17 6.34 -51.93 -0.33 0.84 16 9 C 0.10 1.70 7.32 -3.16 -0.02 1.68 16 10 N -0.61 -13.56 2.94 -180.19 -0.53 -14.09 16 11 C 0.28 7.36 5.75 -5.19 -0.03 7.33 16 12 C -0.53 -15.14 9.39 -34.44 -0.32 -15.46 16 13 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 16 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 20 C 0.69 15.48 8.60 -88.40 -0.76 14.72 16 21 O -0.59 -15.85 17.53 5.30 0.09 -15.76 16 22 N -0.75 -12.31 5.89 -59.33 -0.35 -12.66 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.52 6.53 -51.93 -0.34 0.18 16 25 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 26 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 27 H 0.16 1.27 8.06 -52.49 -0.42 0.84 16 28 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.07 1.18 7.72 -51.93 -0.40 0.77 16 30 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.04 1.31 7.91 -51.93 -0.41 0.90 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.42 6.00 8.96 -40.82 -0.37 5.63 16 LS Contribution 298.60 15.07 4.50 4.50 Total: -1.00 -33.96 298.60 -9.04 -43.00 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -3.93 Total: 0.74 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -2.05 Total: 4.00 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.14 Total: -52.56 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.09 Total: -15.76 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.49 Total: -0.77 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.96 -9.04 -43.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259316586.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.016 kcal (2) G-P(sol) polarization free energy of solvation -33.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds