Wall clock time and date at job start Mon Mar 30 2020 07:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38425 * 122.54253 * 2 1 4 4 C 1.33383 * 114.92174 * 179.73216 * 3 2 1 5 5 S 1.75887 * 109.59638 * 359.97438 * 4 3 2 6 6 C 1.33390 * 122.53568 * 179.71335 * 2 1 3 7 7 C 1.50699 * 125.20296 * 0.24276 * 6 2 1 8 8 H 1.08990 * 110.49169 * 346.25217 * 7 6 2 9 9 C 1.54101 * 110.54491 * 109.11068 * 7 6 2 10 10 N 1.47056 * 103.86280 * 118.59581 * 9 7 6 11 11 C 1.46500 * 125.41034 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47319 * 270.02274 * 11 10 9 13 13 H 1.08005 * 119.99534 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00326 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00063 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00051 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.47297 * 90.00100 * 16 14 12 18 18 H 1.48498 * 109.47286 * 210.00228 * 16 14 12 19 19 H 1.48502 * 109.47168 * 329.99980 * 16 14 12 20 20 C 1.33949 * 109.18163 * 359.97438 * 10 9 7 21 21 O 1.21578 * 123.04261 * 179.97438 * 20 10 9 22 22 N 1.33946 * 113.91251 * 0.02562 * 20 10 9 23 23 H 1.09002 * 109.46881 * 90.02212 * 1 2 3 24 24 H 1.08995 * 109.47054 * 210.02404 * 1 2 3 25 25 H 1.09001 * 109.46829 * 330.02829 * 1 2 3 26 26 H 1.08001 * 122.53506 * 359.70715 * 3 2 1 27 27 H 1.07999 * 125.20481 * 179.97438 * 4 3 2 28 28 H 1.09001 * 110.54968 * 237.18453 * 9 7 6 29 29 H 1.09000 * 110.55483 * 359.97438 * 9 7 6 30 30 H 1.09003 * 109.47343 * 30.01855 * 11 10 9 31 31 H 1.09003 * 109.47444 * 150.02131 * 11 10 9 32 32 H 0.96996 * 119.99724 * 179.97438 * 15 14 12 33 33 H 0.97002 * 125.40926 * 179.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2517 1.1669 0.0000 4 6 3.5737 0.9900 0.0057 5 16 3.9386 -0.7305 0.0122 6 6 2.2244 -1.1245 0.0056 7 6 1.6536 -2.5192 0.0074 8 1 0.5904 -2.4960 0.2462 9 6 1.8908 -3.2024 -1.3534 10 7 2.7239 -4.3680 -1.0220 11 6 3.2276 -5.3522 -1.9831 12 6 2.2295 -6.4725 -2.1248 13 1 1.3120 -6.4534 -1.5554 14 6 2.4877 -7.5217 -2.9812 15 7 3.6053 -7.5452 -3.6742 16 14 1.2509 -8.9106 -3.1562 17 1 0.2918 -8.5854 -4.2422 18 1 1.9645 -10.1702 -3.4867 19 1 0.5132 -9.0803 -1.8786 20 6 2.9499 -4.3863 0.2982 21 8 3.6129 -5.2461 0.8453 22 7 2.3785 -3.3722 0.9610 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3633 0.8903 0.5134 26 1 1.7966 2.1463 -0.0047 27 1 4.3078 1.7821 0.0062 28 1 0.9449 -3.5205 -1.7919 29 1 2.4211 -2.5328 -2.0305 30 1 3.3751 -4.8726 -2.9508 31 1 4.1767 -5.7539 -1.6283 32 1 3.7870 -8.2835 -4.2764 33 1 2.4340 -3.2241 1.9180 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259316586.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:05 Heat of formation + Delta-G solvation = -6.334169 kcal Electronic energy + Delta-G solvation = -17789.751515 eV Core-core repulsion = 14941.578509 eV Total energy + Delta-G solvation = -2848.173006 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.00259 -39.29491 -37.32104 -35.90739 -34.13674 -32.18264 -30.28169 -29.43702 -27.33725 -25.23193 -24.25320 -22.94189 -21.25804 -19.54267 -18.98290 -18.62593 -18.02077 -17.10706 -16.76792 -16.22427 -15.81165 -15.30418 -15.09596 -14.82824 -14.46259 -14.36006 -13.94172 -13.52586 -13.44246 -13.20683 -12.94844 -12.73199 -12.68078 -12.54311 -12.51197 -12.19020 -11.73776 -11.53716 -11.24523 -10.64274 -10.42446 -9.56515 -9.40314 -9.26935 -8.22570 -6.38525 0.03276 0.72017 1.18696 1.38740 1.42135 1.52377 1.70489 1.94711 2.19161 2.40929 3.03778 3.08121 3.52078 3.65656 4.09200 4.12591 4.33984 4.53831 4.56200 4.68132 4.71463 4.84171 4.97730 5.09839 5.17159 5.25222 5.33957 5.53572 5.58629 5.68362 5.90530 6.02429 6.21331 6.70347 6.75048 7.29624 7.69436 8.84263 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.031360 B = 0.004960 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.654219 B = 5643.909335 C = 5847.450771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.078 4.078 3 C -0.137 4.137 4 C -0.204 4.204 5 S 0.055 5.945 6 C -0.213 4.213 7 C 0.206 3.794 8 H 0.139 0.861 9 C 0.097 3.903 10 N -0.621 5.621 11 C 0.293 3.707 12 C -0.549 4.549 13 H 0.055 0.945 14 C 0.010 3.990 15 N -0.928 5.928 16 Si 0.972 3.028 17 H -0.261 1.261 18 H -0.281 1.281 19 H -0.274 1.274 20 C 0.686 3.314 21 O -0.645 6.645 22 N -0.727 5.727 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.169 0.831 27 H 0.185 0.815 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.031 0.969 31 H -0.002 1.002 32 H 0.269 0.731 33 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.081 21.178 5.906 23.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.092 4.092 3 C -0.167 4.167 4 C -0.339 4.339 5 S 0.320 5.680 6 C -0.331 4.331 7 C 0.099 3.901 8 H 0.156 0.844 9 C -0.026 4.026 10 N -0.358 5.358 11 C 0.172 3.828 12 C -0.587 4.587 13 H 0.073 0.927 14 C -0.189 4.189 15 N -0.567 5.567 16 Si 0.796 3.204 17 H -0.186 1.186 18 H -0.206 1.206 19 H -0.199 1.199 20 C 0.387 3.613 21 O -0.528 6.528 22 N -0.389 5.389 23 H 0.102 0.898 24 H 0.092 0.908 25 H 0.104 0.896 26 H 0.186 0.814 27 H 0.202 0.798 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.049 0.951 31 H 0.016 0.984 32 H 0.078 0.922 33 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -6.212 19.690 5.894 21.472 hybrid contribution -1.025 -0.101 0.145 1.040 sum -7.237 19.590 6.039 21.739 Atomic orbital electron populations 1.20702 0.87518 1.03997 1.03625 1.19212 0.98864 0.90726 1.00399 1.20373 0.92508 1.00149 1.03632 1.25965 1.00804 0.98120 1.09055 1.85090 1.07243 1.02340 1.73313 1.24462 0.95581 0.98199 1.14901 1.20355 0.97771 0.84387 0.87573 0.84403 1.22615 0.96949 0.86418 0.96651 1.47540 1.53921 1.28128 1.06166 1.18578 0.93264 0.85307 0.85622 1.21723 1.05226 1.06945 1.24819 0.92669 1.25865 0.97629 1.00606 0.94829 1.70049 1.25682 1.33388 1.27582 0.85351 0.78582 0.77827 0.78644 1.18553 1.20596 1.19860 1.16220 0.80060 0.82167 0.82898 1.90844 1.47739 1.42493 1.71707 1.45145 1.56498 1.27001 1.10290 0.89794 0.90801 0.89589 0.81384 0.79799 0.88489 0.90031 0.95068 0.98409 0.92228 0.72496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 9.82 71.24 0.70 -0.42 16 2 C -0.08 -1.36 5.80 -20.92 -0.12 -1.48 16 3 C -0.14 -2.13 9.98 21.22 0.21 -1.92 16 4 C -0.20 -3.65 11.23 66.72 0.75 -2.90 16 5 S 0.05 1.39 23.19 -56.49 -1.31 0.08 16 6 C -0.21 -4.87 5.28 24.59 0.13 -4.74 16 7 C 0.21 5.28 4.01 44.51 0.18 5.46 16 8 H 0.14 2.63 6.34 -2.39 -0.02 2.61 16 9 C 0.10 3.16 7.32 86.65 0.63 3.80 16 10 N -0.62 -28.46 2.94 -842.73 -2.48 -30.94 16 11 C 0.29 16.32 5.75 85.63 0.49 16.81 16 12 C -0.55 -32.08 9.39 25.60 0.24 -31.84 16 13 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 14 C 0.01 0.58 5.46 84.65 0.46 1.04 16 15 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 16 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 17 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 20 C 0.69 31.66 8.60 179.57 1.54 33.21 16 21 O -0.65 -36.75 17.53 -3.96 -0.07 -36.82 16 22 N -0.73 -23.74 5.89 -460.36 -2.71 -26.45 16 23 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.07 0.78 6.53 -2.39 -0.02 0.76 16 25 H 0.09 0.67 8.13 -2.39 -0.02 0.65 16 26 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 27 H 0.18 2.35 8.06 -2.91 -0.02 2.32 16 28 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 29 H 0.08 2.54 7.72 -2.39 -0.02 2.52 16 30 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.00 -0.14 7.91 -2.39 -0.02 -0.16 16 32 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.43 12.11 8.96 -92.71 -0.83 11.28 16 Total: -1.00 -77.03 298.60 1.27 -75.77 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.30 Total: 10.27 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: 5.22 Total: 17.03 kcal Atomic # 7 Polarization: -108.36 SS G_CDS: -4.90 Total: -113.26 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.07 Total: -36.82 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -1.31 Total: 0.08 kcal Total: -77.03 1.27 -75.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259316586.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.432 kcal (2) G-P(sol) polarization free energy of solvation -77.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds