Wall clock time and date at job start Mon Mar 30 2020 07:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38423 * 122.53928 * 2 1 4 4 C 1.33388 * 114.92297 * 180.02562 * 3 2 1 5 5 S 1.75886 * 109.59210 * 359.75386 * 4 3 2 6 6 C 1.33388 * 122.54260 * 180.02562 * 2 1 3 7 7 C 1.50699 * 125.19988 * 359.95238 * 6 2 1 8 8 H 1.09004 * 110.49094 * 13.75606 * 7 6 2 9 9 C 1.54106 * 110.76244 * 251.01617 * 7 6 2 10 10 N 1.47052 * 103.86341 * 241.67984 * 9 7 6 11 11 C 1.46500 * 125.40495 * 179.86383 * 10 9 7 12 12 C 1.50694 * 109.47517 * 269.72147 * 11 10 9 13 13 H 1.08002 * 120.00179 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00472 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00608 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 C 1.33942 * 109.18029 * 359.60999 * 10 9 7 21 21 O 1.21585 * 123.04296 * 180.24524 * 20 10 9 22 22 N 1.33949 * 113.91850 * 0.25669 * 20 10 9 23 23 H 1.09007 * 109.46949 * 269.97446 * 1 2 3 24 24 H 1.08998 * 109.47404 * 29.97455 * 1 2 3 25 25 H 1.09000 * 109.47306 * 149.97804 * 1 2 3 26 26 H 1.07997 * 122.53941 * 0.04258 * 3 2 1 27 27 H 1.08001 * 125.20639 * 180.02562 * 4 3 2 28 28 H 1.08994 * 110.65956 * 123.02770 * 9 7 6 29 29 H 1.09003 * 110.43347 * 0.22213 * 9 7 6 30 30 H 1.09005 * 109.46643 * 149.72679 * 11 10 9 31 31 H 1.08998 * 109.47481 * 29.72513 * 11 10 9 32 32 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 33 33 H 0.96995 * 125.41373 * 180.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1669 0.0000 4 6 3.5736 0.9901 -0.0005 5 16 3.9386 -0.7304 0.0060 6 6 2.2245 -1.1245 -0.0005 7 6 1.6537 -2.5192 -0.0001 8 1 0.5911 -2.4966 -0.2422 9 6 1.8816 -3.2023 1.3623 10 7 2.7210 -4.3652 1.0374 11 6 3.2214 -5.3470 2.0028 12 6 4.5625 -4.8999 2.5246 13 1 4.9984 -3.9765 2.1728 14 6 5.2333 -5.6696 3.4513 15 7 4.7022 -6.7938 3.8801 16 14 6.8960 -5.1159 4.0977 17 1 7.9711 -5.6641 3.2324 18 1 6.9615 -3.6323 4.0885 19 1 7.0773 -5.6107 5.4860 20 6 2.9506 -4.3872 -0.2820 21 8 3.6159 -5.2480 -0.8248 22 7 2.3813 -3.3749 -0.9493 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5142 26 1 1.7964 2.1463 0.0007 27 1 4.3077 1.7823 -0.0002 28 1 0.9340 -3.5233 1.7948 29 1 2.4054 -2.5303 2.0422 30 1 3.3262 -6.3158 1.5144 31 1 2.5189 -5.4321 2.8318 32 1 5.1742 -7.3355 4.5318 33 1 2.4394 -3.2295 -1.9065 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259316589.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:15 Heat of formation + Delta-G solvation = 17.240385 kcal Electronic energy + Delta-G solvation = -17923.290921 eV Core-core repulsion = 15076.140185 eV Total energy + Delta-G solvation = -2847.150736 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 7.46 seconds Orbital eigenvalues (eV) -40.45530 -38.29050 -35.62606 -34.02090 -32.17761 -31.18789 -29.09108 -27.65020 -26.05045 -23.46684 -22.92728 -21.83204 -19.51019 -18.58493 -17.66438 -16.75557 -16.41828 -15.65822 -15.10735 -14.70660 -14.41818 -14.13700 -13.63687 -13.30501 -13.15634 -12.90220 -12.64163 -12.23820 -12.15805 -11.91860 -11.74523 -11.61644 -11.24485 -10.89207 -10.62777 -10.53890 -10.13453 -9.64137 -9.35768 -8.91653 -8.56734 -8.43212 -8.26094 -7.62845 -6.04237 -4.08931 0.97578 1.70640 2.13578 2.62700 3.32779 3.38066 3.39104 3.46357 3.91613 4.36617 4.51331 4.75371 4.82927 4.87316 5.17170 5.28006 5.29631 5.36644 5.45906 5.53692 5.77783 5.84579 5.97051 6.05966 6.22325 6.36672 6.49335 7.22238 7.40232 7.59522 7.69063 7.95325 8.22316 8.43565 8.92954 9.38219 9.58501 11.03497 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021708 B = 0.006259 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.517317 B = 4472.475951 C = 5056.294594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.101 4.101 3 C -0.136 4.136 4 C -0.224 4.224 5 S 0.147 5.853 6 C -0.195 4.195 7 C 0.195 3.805 8 H 0.102 0.898 9 C 0.101 3.899 10 N -0.610 5.610 11 C 0.277 3.723 12 C -0.528 4.528 13 H 0.059 0.941 14 C 0.062 3.938 15 N -0.896 5.896 16 Si 0.898 3.102 17 H -0.279 1.279 18 H -0.274 1.274 19 H -0.285 1.285 20 C 0.693 3.307 21 O -0.586 6.586 22 N -0.748 5.748 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.136 0.864 27 H 0.161 0.839 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.037 0.963 32 H 0.264 0.736 33 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.296 16.311 -6.577 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.167 4.167 4 C -0.360 4.360 5 S 0.414 5.586 6 C -0.315 4.315 7 C 0.086 3.914 8 H 0.120 0.880 9 C -0.024 4.024 10 N -0.348 5.348 11 C 0.158 3.842 12 C -0.567 4.567 13 H 0.077 0.923 14 C -0.140 4.140 15 N -0.535 5.535 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.199 1.199 19 H -0.211 1.211 20 C 0.393 3.607 21 O -0.464 6.464 22 N -0.411 5.411 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.153 0.847 27 H 0.179 0.821 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -7.461 14.689 -6.541 17.727 hybrid contribution -0.248 1.452 0.090 1.476 sum -7.709 16.142 -6.452 19.016 Atomic orbital electron populations 1.20542 0.89874 1.02540 1.02442 1.18774 0.97274 0.91365 1.04006 1.19953 0.92803 0.98959 1.04947 1.25748 0.99882 1.00277 1.10114 1.84982 1.04679 0.98265 1.70674 1.24722 0.96749 0.98438 1.11545 1.20193 0.96095 0.84684 0.90405 0.88017 1.22305 0.96429 0.89004 0.94637 1.47754 1.52797 1.27840 1.06367 1.19125 0.93820 0.85984 0.85222 1.21492 1.03819 1.07790 1.23638 0.92260 1.24920 0.98056 0.94785 0.96262 1.69931 1.38718 1.13225 1.31599 0.86496 0.84075 0.78914 0.77976 1.20495 1.19851 1.21114 1.15988 0.79992 0.81966 0.82736 1.90907 1.44468 1.40051 1.70979 1.45376 1.57819 1.28305 1.09565 0.90992 0.91656 0.91470 0.84651 0.82142 0.90317 0.90105 0.93766 0.94550 0.92665 0.73886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 9.82 36.00 0.35 -0.41 16 2 C -0.10 -1.11 5.80 -106.25 -0.62 -1.73 16 3 C -0.14 -1.43 9.98 -41.21 -0.41 -1.84 16 4 C -0.22 -2.55 11.23 29.04 0.33 -2.23 16 5 S 0.15 2.13 23.20 -107.50 -2.49 -0.36 16 6 C -0.20 -2.57 5.30 -36.00 -0.19 -2.76 16 7 C 0.19 2.67 4.00 -68.20 -0.27 2.40 16 8 H 0.10 1.09 6.35 -51.93 -0.33 0.76 16 9 C 0.10 1.68 7.33 -3.16 -0.02 1.66 16 10 N -0.61 -13.52 2.94 -180.20 -0.53 -14.05 16 11 C 0.28 7.32 5.75 -5.20 -0.03 7.29 16 12 C -0.53 -15.15 9.39 -34.44 -0.32 -15.48 16 13 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 15 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 16 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 C 0.69 15.43 8.60 -88.40 -0.76 14.67 16 21 O -0.59 -15.82 17.53 5.29 0.09 -15.72 16 22 N -0.75 -12.29 5.90 -59.32 -0.35 -12.64 16 23 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 24 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 25 H 0.07 0.50 6.54 -51.93 -0.34 0.16 16 26 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 27 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.39 7.73 -51.93 -0.40 0.99 16 30 H 0.04 1.31 7.91 -51.93 -0.41 0.90 16 31 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.42 5.98 8.96 -40.82 -0.37 5.61 16 LS Contribution 298.64 15.07 4.50 4.50 Total: -1.00 -34.06 298.64 -9.04 -43.09 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -3.93 Total: 0.75 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -2.05 Total: 3.24 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.14 Total: -52.53 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: 0.09 Total: -15.72 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.49 Total: -0.36 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.06 -9.04 -43.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259316589.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.334 kcal (2) G-P(sol) polarization free energy of solvation -34.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.46 seconds