Wall clock time and date at job start Mon Mar 30 2020 07:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38423 * 122.53928 * 2 1 4 4 C 1.33388 * 114.92297 * 180.02562 * 3 2 1 5 5 S 1.75886 * 109.59210 * 359.75386 * 4 3 2 6 6 C 1.33388 * 122.54260 * 180.02562 * 2 1 3 7 7 C 1.50699 * 125.19988 * 359.95238 * 6 2 1 8 8 H 1.09004 * 110.49094 * 13.75606 * 7 6 2 9 9 C 1.54106 * 110.76244 * 251.01617 * 7 6 2 10 10 N 1.47052 * 103.86341 * 241.67984 * 9 7 6 11 11 C 1.46500 * 125.40495 * 179.86383 * 10 9 7 12 12 C 1.50694 * 109.47517 * 269.72147 * 11 10 9 13 13 H 1.08002 * 120.00179 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00472 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00608 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 C 1.33942 * 109.18029 * 359.60999 * 10 9 7 21 21 O 1.21585 * 123.04296 * 180.24524 * 20 10 9 22 22 N 1.33949 * 113.91850 * 0.25669 * 20 10 9 23 23 H 1.09007 * 109.46949 * 269.97446 * 1 2 3 24 24 H 1.08998 * 109.47404 * 29.97455 * 1 2 3 25 25 H 1.09000 * 109.47306 * 149.97804 * 1 2 3 26 26 H 1.07997 * 122.53941 * 0.04258 * 3 2 1 27 27 H 1.08001 * 125.20639 * 180.02562 * 4 3 2 28 28 H 1.08994 * 110.65956 * 123.02770 * 9 7 6 29 29 H 1.09003 * 110.43347 * 0.22213 * 9 7 6 30 30 H 1.09005 * 109.46643 * 149.72679 * 11 10 9 31 31 H 1.08998 * 109.47481 * 29.72513 * 11 10 9 32 32 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 33 33 H 0.96995 * 125.41373 * 180.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1669 0.0000 4 6 3.5736 0.9901 -0.0005 5 16 3.9386 -0.7304 0.0060 6 6 2.2245 -1.1245 -0.0005 7 6 1.6537 -2.5192 -0.0001 8 1 0.5911 -2.4966 -0.2422 9 6 1.8816 -3.2023 1.3623 10 7 2.7210 -4.3652 1.0374 11 6 3.2214 -5.3470 2.0028 12 6 4.5625 -4.8999 2.5246 13 1 4.9984 -3.9765 2.1728 14 6 5.2333 -5.6696 3.4513 15 7 4.7022 -6.7938 3.8801 16 14 6.8960 -5.1159 4.0977 17 1 7.9711 -5.6641 3.2324 18 1 6.9615 -3.6323 4.0885 19 1 7.0773 -5.6107 5.4860 20 6 2.9506 -4.3872 -0.2820 21 8 3.6159 -5.2480 -0.8248 22 7 2.3813 -3.3749 -0.9493 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5142 26 1 1.7964 2.1463 0.0007 27 1 4.3077 1.7823 -0.0002 28 1 0.9340 -3.5233 1.7948 29 1 2.4054 -2.5303 2.0422 30 1 3.3262 -6.3158 1.5144 31 1 2.5189 -5.4321 2.8318 32 1 5.1742 -7.3355 4.5318 33 1 2.4394 -3.2295 -1.9065 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259316589.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:10 Heat of formation + Delta-G solvation = -6.388298 kcal Electronic energy + Delta-G solvation = -17924.315538 eV Core-core repulsion = 15076.140185 eV Total energy + Delta-G solvation = -2848.175353 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.98973 -39.28515 -37.31099 -35.90296 -34.13799 -32.17769 -30.26492 -29.43907 -27.31927 -25.23819 -24.24554 -22.93721 -21.24843 -19.53440 -18.96016 -18.67850 -18.01201 -17.01786 -16.76696 -16.26487 -15.88681 -15.30527 -15.04726 -14.80992 -14.45606 -14.35844 -13.90907 -13.56169 -13.44202 -13.17837 -12.92373 -12.72608 -12.71457 -12.58434 -12.49069 -12.19539 -11.73882 -11.49676 -11.23786 -10.65913 -10.41896 -9.56129 -9.39360 -9.27320 -8.23827 -6.38547 0.04228 0.73520 1.20861 1.35562 1.38616 1.48207 1.70535 1.95178 2.21375 2.38688 3.03933 3.07798 3.53041 3.67898 4.09258 4.12636 4.36783 4.52567 4.56235 4.67390 4.74987 4.85121 4.99676 5.10239 5.17337 5.26250 5.35555 5.53384 5.58275 5.70156 5.91158 6.03009 6.22289 6.69974 6.76190 7.28989 7.70377 8.82691 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021708 B = 0.006259 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.517317 B = 4472.475951 C = 5056.294594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.079 4.079 3 C -0.135 4.135 4 C -0.207 4.207 5 S 0.044 5.956 6 C -0.212 4.212 7 C 0.206 3.794 8 H 0.147 0.853 9 C 0.095 3.905 10 N -0.621 5.621 11 C 0.292 3.708 12 C -0.547 4.547 13 H 0.048 0.952 14 C 0.013 3.987 15 N -0.925 5.925 16 Si 0.964 3.036 17 H -0.280 1.280 18 H -0.266 1.266 19 H -0.270 1.270 20 C 0.686 3.314 21 O -0.646 6.646 22 N -0.727 5.727 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.170 0.830 27 H 0.182 0.818 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.001 0.999 31 H 0.036 0.964 32 H 0.269 0.731 33 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.952 19.301 -6.412 23.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.093 4.093 3 C -0.165 4.165 4 C -0.343 4.343 5 S 0.310 5.690 6 C -0.330 4.330 7 C 0.099 3.901 8 H 0.164 0.836 9 C -0.028 4.028 10 N -0.357 5.357 11 C 0.172 3.828 12 C -0.585 4.585 13 H 0.067 0.933 14 C -0.186 4.186 15 N -0.564 5.564 16 Si 0.788 3.212 17 H -0.206 1.206 18 H -0.190 1.190 19 H -0.195 1.195 20 C 0.386 3.614 21 O -0.528 6.528 22 N -0.389 5.389 23 H 0.103 0.897 24 H 0.104 0.896 25 H 0.095 0.905 26 H 0.187 0.813 27 H 0.199 0.801 28 H 0.127 0.873 29 H 0.090 0.910 30 H 0.019 0.981 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -9.175 17.754 -6.387 20.981 hybrid contribution 0.176 0.648 0.024 0.671 sum -8.999 18.402 -6.363 21.450 Atomic orbital electron populations 1.20699 0.87130 1.04137 1.03674 1.19228 0.99018 0.90549 1.00475 1.20389 0.92361 1.00279 1.03514 1.25956 1.00938 0.98014 1.09377 1.85363 1.07984 1.02510 1.73160 1.24511 0.95106 0.98586 1.14775 1.20410 0.97883 0.84147 0.87643 0.83617 1.22656 0.96488 0.87007 0.96680 1.47539 1.53493 1.28740 1.05961 1.18593 0.93470 0.85411 0.85364 1.21700 1.05028 1.07647 1.24174 0.93335 1.25777 1.01792 0.94738 0.96338 1.70027 1.40304 1.14086 1.31996 0.85476 0.79057 0.78860 0.77821 1.20607 1.18988 1.19464 1.16230 0.79799 0.82445 0.82906 1.90846 1.47158 1.42717 1.72121 1.45151 1.56625 1.26855 1.10312 0.89736 0.89618 0.90456 0.81282 0.80051 0.87319 0.90981 0.98073 0.94561 0.92193 0.72516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 9.82 71.23 0.70 -0.35 16 2 C -0.08 -1.43 5.80 -20.92 -0.12 -1.56 16 3 C -0.14 -2.31 9.98 21.22 0.21 -2.10 16 4 C -0.21 -4.24 11.23 66.72 0.75 -3.49 16 5 S 0.04 1.27 23.20 -56.49 -1.31 -0.04 16 6 C -0.21 -5.12 5.30 24.59 0.13 -4.99 16 7 C 0.21 5.20 4.00 44.51 0.18 5.38 16 8 H 0.15 2.47 6.35 -2.38 -0.02 2.46 16 9 C 0.10 3.06 7.33 86.65 0.64 3.69 16 10 N -0.62 -28.25 2.94 -842.75 -2.48 -30.72 16 11 C 0.29 16.16 5.75 85.63 0.49 16.65 16 12 C -0.55 -32.44 9.39 25.60 0.24 -32.20 16 13 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 14 C 0.01 0.76 5.46 84.66 0.46 1.22 16 15 N -0.92 -55.97 13.29 21.45 0.28 -55.68 16 16 Si 0.96 45.78 29.54 68.60 2.03 47.80 16 17 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 C 0.69 31.49 8.60 179.57 1.54 33.03 16 21 O -0.65 -36.67 17.53 -3.98 -0.07 -36.74 16 22 N -0.73 -23.57 5.90 -460.33 -2.72 -26.28 16 23 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.08 0.64 8.13 -2.39 -0.02 0.63 16 25 H 0.08 0.72 6.54 -2.39 -0.02 0.70 16 26 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 27 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 28 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.07 2.46 7.73 -2.39 -0.02 2.44 16 30 H 0.00 0.07 7.91 -2.38 -0.02 0.06 16 31 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 33 H 0.43 12.03 8.96 -92.71 -0.83 11.20 16 Total: -1.00 -78.13 298.64 1.26 -76.86 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.30 Total: 9.51 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 5.22 Total: 15.29 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -4.91 Total: -112.69 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -0.07 Total: -36.74 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -1.31 Total: -0.04 kcal Total: -78.13 1.26 -76.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259316589.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.475 kcal (2) G-P(sol) polarization free energy of solvation -78.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds