Wall clock time and date at job start Mon Mar 30 2020 07:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48499 * 109.47217 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47145 * 300.00135 * 3 2 1 6 6 H 1.48503 * 109.46774 * 60.00020 * 3 2 1 7 7 C 1.38808 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00069 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00109 * 180.02562 * 9 7 2 11 11 H 1.08991 * 110.28711 * 324.32556 * 10 9 7 12 12 C 1.54257 * 110.32301 * 86.45558 * 10 9 7 13 13 C 1.54381 * 105.14915 * 118.84390 * 12 10 9 14 14 N 1.48714 * 104.51842 * 336.26640 * 13 12 10 15 15 C 1.39750 * 111.01560 * 158.96378 * 14 13 12 16 16 C 1.38875 * 120.07925 * 359.16166 * 15 14 13 17 17 C 1.38123 * 119.94045 * 179.69573 * 16 15 14 18 18 C 1.38292 * 120.08692 * 0.57411 * 17 16 15 19 19 C 1.38266 * 120.16116 * 359.72744 * 18 17 16 20 20 C 1.38205 * 120.06157 * 359.96641 * 19 18 17 21 21 Cl 1.73603 * 120.04833 * 180.02562 * 20 19 18 22 22 C 1.48563 * 104.28785 * 39.36583 * 14 13 12 23 23 H 0.97000 * 119.99923 * 359.97438 * 1 2 3 24 24 H 0.96998 * 119.99956 * 359.97438 * 9 7 2 25 25 H 1.09006 * 110.32206 * 237.78781 * 12 10 9 26 26 H 1.08996 * 110.32679 * 359.89915 * 12 10 9 27 27 H 1.09003 * 110.41014 * 94.97847 * 13 12 10 28 28 H 1.08997 * 110.41096 * 217.41369 * 13 12 10 29 29 H 1.08001 * 120.03214 * 359.97438 * 16 15 14 30 30 H 1.07994 * 119.95619 * 180.27698 * 17 16 15 31 31 H 1.08001 * 119.91686 * 179.74192 * 18 17 16 32 32 H 1.08008 * 119.96913 * 180.02562 * 19 18 17 33 33 H 1.09003 * 110.41216 * 201.79911 * 22 14 13 34 34 H 1.08994 * 110.51305 * 79.39843 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9661 -3.5689 -0.5967 12 6 2.4033 -4.0761 1.4432 13 6 1.6890 -5.4287 1.6523 14 7 0.5756 -5.4187 0.6665 15 6 0.1351 -6.7168 0.3948 16 6 0.7454 -7.8020 1.0100 17 6 0.3036 -9.0834 0.7443 18 6 -0.7378 -9.2877 -0.1425 19 6 -1.3442 -8.2105 -0.7619 20 6 -0.9114 -6.9252 -0.4959 21 17 -1.6735 -5.5729 -1.2733 22 6 1.1643 -4.7919 -0.5450 23 1 -0.4850 0.8401 0.0004 24 1 0.3555 -2.3881 0.0002 25 1 3.4809 -4.1958 1.5552 26 1 2.0294 -3.3371 2.1518 27 1 2.3706 -6.2542 1.4472 28 1 1.2993 -5.4998 2.6678 29 1 1.5619 -7.6439 1.6990 30 1 0.7751 -9.9272 1.2259 31 1 -1.0784 -10.2910 -0.3514 32 1 -2.1575 -8.3736 -1.4536 33 1 0.3791 -4.3850 -1.1822 34 1 1.7636 -5.5160 -1.0968 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259403365.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:44 Heat of formation + Delta-G solvation = 50.718922 kcal Electronic energy + Delta-G solvation = -17838.788477 eV Core-core repulsion = 14991.045772 eV Total energy + Delta-G solvation = -2847.742705 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.20038 -37.75394 -36.18018 -34.32705 -31.99549 -30.90499 -29.93252 -28.47899 -27.08213 -23.48984 -23.24880 -22.16297 -20.55784 -19.53411 -17.73717 -17.09972 -15.91457 -15.73660 -15.02291 -14.67230 -14.49715 -13.88730 -13.66560 -13.37023 -13.07461 -12.75981 -12.25696 -12.18624 -11.64044 -11.49935 -11.27539 -11.21730 -10.98490 -10.81197 -10.65427 -10.41849 -10.12552 -9.93660 -9.62820 -9.45016 -8.90078 -8.79768 -7.80760 -6.92271 -5.72985 -3.02174 1.17008 1.25587 2.39546 3.44831 3.50179 3.52696 3.56553 4.06162 4.61075 4.74946 4.84990 5.02523 5.10116 5.22119 5.41491 5.43987 5.51847 5.56504 5.68519 5.77348 5.84345 6.06954 6.08954 6.14273 6.25499 6.32870 6.36210 6.48296 6.66227 6.66991 6.90476 7.18007 7.37655 7.73042 8.45106 9.56762 10.15134 10.51064 11.49293 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.032750 B = 0.005102 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.752444 B = 5486.872795 C = 6160.979919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.715 5.715 10 C 0.177 3.823 11 H 0.057 0.943 12 C -0.149 4.149 13 C 0.031 3.969 14 N -0.456 5.456 15 C 0.120 3.880 16 C -0.166 4.166 17 C -0.094 4.094 18 C -0.143 4.143 19 C -0.092 4.092 20 C -0.056 4.056 21 Cl -0.051 7.051 22 C 0.028 3.972 23 H 0.254 0.746 24 H 0.389 0.611 25 H 0.058 0.942 26 H 0.083 0.917 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.137 0.863 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.101 0.899 34 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.544 -19.166 0.238 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.356 5.356 10 C 0.065 3.935 11 H 0.075 0.925 12 C -0.190 4.190 13 C -0.096 4.096 14 N -0.170 5.170 15 C 0.020 3.980 16 C -0.187 4.187 17 C -0.113 4.113 18 C -0.162 4.162 19 C -0.111 4.111 20 C -0.085 4.085 21 Cl -0.022 7.022 22 C -0.098 4.098 23 H 0.064 0.936 24 H 0.223 0.777 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.155 0.845 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.119 0.881 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.159 -18.488 0.342 18.492 hybrid contribution 0.578 0.561 -0.140 0.817 sum 0.737 -17.928 0.202 17.944 Atomic orbital electron populations 1.69692 1.05085 1.25482 1.57424 1.24740 0.95460 0.97621 1.02959 0.86150 0.78760 0.84302 0.77158 1.20596 1.21917 1.21918 1.19282 0.90983 0.84111 1.42851 0.91172 1.42457 1.05970 0.99201 1.87963 1.20912 0.93633 0.86222 0.92687 0.92506 1.23239 0.98526 0.95343 1.01930 1.23360 0.91370 0.98619 0.96265 1.62436 1.32096 1.12478 1.10013 1.19071 0.94403 0.90214 0.94302 1.21425 1.01286 0.91786 1.04221 1.21064 0.96403 0.96617 0.97216 1.20966 0.98017 0.98404 0.98829 1.20941 0.99926 0.90360 0.99862 1.20691 0.97793 0.89509 1.00478 1.98395 1.80144 1.44339 1.79325 1.23712 0.98645 0.96418 0.90978 0.93568 0.77674 0.92307 0.89859 0.93044 0.90229 0.84532 0.85788 0.85609 0.85112 0.88103 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.90 22.46 29.55 -169.99 -5.02 17.43 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 7 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.71 -18.08 5.04 -52.09 -0.26 -18.34 16 10 C 0.18 3.54 3.70 -66.55 -0.25 3.30 16 11 H 0.06 1.13 8.11 -51.93 -0.42 0.71 16 12 C -0.15 -2.61 6.78 -25.35 -0.17 -2.78 16 13 C 0.03 0.46 5.45 -2.09 -0.01 0.44 16 14 N -0.46 -7.66 5.10 -166.54 -0.85 -8.51 16 15 C 0.12 1.79 5.39 -83.73 -0.45 1.34 16 16 C -0.17 -2.04 8.87 -39.39 -0.35 -2.39 16 17 C -0.09 -0.97 10.04 -39.60 -0.40 -1.37 16 18 C -0.14 -1.45 10.04 -39.55 -0.40 -1.85 16 19 C -0.09 -1.08 9.82 -39.58 -0.39 -1.47 16 20 C -0.06 -0.81 6.17 -39.31 -0.24 -1.05 16 21 Cl -0.05 -0.82 26.00 -51.86 -1.35 -2.17 16 22 C 0.03 0.49 5.29 -2.18 -0.01 0.48 16 23 H 0.25 7.52 8.31 -40.82 -0.34 7.19 16 24 H 0.39 10.71 7.75 -40.82 -0.32 10.40 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.08 1.69 7.95 -51.93 -0.41 1.27 16 27 H 0.05 0.65 6.01 -51.93 -0.31 0.34 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.14 1.48 5.62 -52.49 -0.30 1.19 16 30 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 33 H 0.10 1.96 5.92 -51.93 -0.31 1.65 16 34 H 0.05 0.75 7.98 -51.93 -0.41 0.33 16 LS Contribution 293.04 15.07 4.42 4.42 Total: -1.00 -30.56 293.04 -9.40 -39.96 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -4.14 Total: 7.51 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -2.91 Total: -12.61 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.39 Total: -54.54 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.35 Total: -2.17 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.56 -9.40 -39.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259403365.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.675 kcal (2) G-P(sol) polarization free energy of solvation -30.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds