Wall clock time and date at job start Mon Mar 30 2020 07:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48499 * 109.47217 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47145 * 300.00135 * 3 2 1 6 6 H 1.48503 * 109.46774 * 60.00020 * 3 2 1 7 7 C 1.38808 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00069 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00109 * 180.02562 * 9 7 2 11 11 H 1.08991 * 110.28711 * 324.32556 * 10 9 7 12 12 C 1.54257 * 110.32301 * 86.45558 * 10 9 7 13 13 C 1.54381 * 105.14915 * 118.84390 * 12 10 9 14 14 N 1.48714 * 104.51842 * 336.26640 * 13 12 10 15 15 C 1.39750 * 111.01560 * 158.96378 * 14 13 12 16 16 C 1.38875 * 120.07925 * 359.16166 * 15 14 13 17 17 C 1.38123 * 119.94045 * 179.69573 * 16 15 14 18 18 C 1.38292 * 120.08692 * 0.57411 * 17 16 15 19 19 C 1.38266 * 120.16116 * 359.72744 * 18 17 16 20 20 C 1.38205 * 120.06157 * 359.96641 * 19 18 17 21 21 Cl 1.73603 * 120.04833 * 180.02562 * 20 19 18 22 22 C 1.48563 * 104.28785 * 39.36583 * 14 13 12 23 23 H 0.97000 * 119.99923 * 359.97438 * 1 2 3 24 24 H 0.96998 * 119.99956 * 359.97438 * 9 7 2 25 25 H 1.09006 * 110.32206 * 237.78781 * 12 10 9 26 26 H 1.08996 * 110.32679 * 359.89915 * 12 10 9 27 27 H 1.09003 * 110.41014 * 94.97847 * 13 12 10 28 28 H 1.08997 * 110.41096 * 217.41369 * 13 12 10 29 29 H 1.08001 * 120.03214 * 359.97438 * 16 15 14 30 30 H 1.07994 * 119.95619 * 180.27698 * 17 16 15 31 31 H 1.08001 * 119.91686 * 179.74192 * 18 17 16 32 32 H 1.08008 * 119.96913 * 180.02562 * 19 18 17 33 33 H 1.09003 * 110.41216 * 201.79911 * 22 14 13 34 34 H 1.08994 * 110.51305 * 79.39843 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9661 -3.5689 -0.5967 12 6 2.4033 -4.0761 1.4432 13 6 1.6890 -5.4287 1.6523 14 7 0.5756 -5.4187 0.6665 15 6 0.1351 -6.7168 0.3948 16 6 0.7454 -7.8020 1.0100 17 6 0.3036 -9.0834 0.7443 18 6 -0.7378 -9.2877 -0.1425 19 6 -1.3442 -8.2105 -0.7619 20 6 -0.9114 -6.9252 -0.4959 21 17 -1.6735 -5.5729 -1.2733 22 6 1.1643 -4.7919 -0.5450 23 1 -0.4850 0.8401 0.0004 24 1 0.3555 -2.3881 0.0002 25 1 3.4809 -4.1958 1.5552 26 1 2.0294 -3.3371 2.1518 27 1 2.3706 -6.2542 1.4472 28 1 1.2993 -5.4998 2.6678 29 1 1.5619 -7.6439 1.6990 30 1 0.7751 -9.9272 1.2259 31 1 -1.0784 -10.2910 -0.3514 32 1 -2.1575 -8.3736 -1.4536 33 1 0.3791 -4.3850 -1.1822 34 1 1.7636 -5.5160 -1.0968 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259403365.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:44 Heat of formation + Delta-G solvation = 31.389863 kcal Electronic energy + Delta-G solvation = -17839.626648 eV Core-core repulsion = 14991.045772 eV Total energy + Delta-G solvation = -2848.580875 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.30702 -38.94104 -37.28856 -36.06383 -33.67827 -31.88529 -31.50143 -29.70597 -28.55992 -25.47521 -24.31480 -23.25209 -21.70831 -20.99467 -19.32374 -18.59342 -17.17248 -16.93076 -16.35018 -16.13044 -15.61095 -15.32320 -15.14613 -14.72634 -14.34721 -14.09680 -13.73165 -13.42598 -13.04654 -12.89453 -12.77108 -12.61131 -12.28698 -12.19370 -12.14086 -12.03717 -11.88010 -11.51787 -11.32977 -10.97331 -10.52648 -9.74979 -9.01023 -8.85946 -7.91329 -5.20191 0.24591 0.33630 1.33879 1.47532 1.48491 1.58414 2.57251 2.63573 2.95714 3.40289 3.70702 3.82775 3.88788 3.97221 4.14447 4.31068 4.35889 4.42977 4.45585 4.55824 4.67079 4.79323 4.87229 4.89968 4.95840 5.07910 5.25655 5.32394 5.47275 5.51483 5.54876 5.78470 5.89018 6.28140 6.30058 7.35840 8.12825 8.36619 9.32589 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.032750 B = 0.005102 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.752444 B = 5486.872795 C = 6160.979919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.236 4.236 8 H 0.079 0.921 9 N -0.729 5.729 10 C 0.166 3.834 11 H 0.059 0.941 12 C -0.141 4.141 13 C 0.039 3.961 14 N -0.477 5.477 15 C 0.091 3.909 16 C -0.168 4.168 17 C -0.087 4.087 18 C -0.132 4.132 19 C -0.098 4.098 20 C -0.077 4.077 21 Cl -0.080 7.080 22 C 0.040 3.960 23 H 0.249 0.751 24 H 0.373 0.627 25 H 0.083 0.917 26 H 0.050 0.950 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.152 0.848 30 H 0.160 0.840 31 H 0.161 0.839 32 H 0.145 0.855 33 H 0.078 0.922 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.079 -22.040 0.832 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.368 4.368 8 H 0.097 0.903 9 N -0.368 5.368 10 C 0.056 3.944 11 H 0.077 0.923 12 C -0.181 4.181 13 C -0.087 4.087 14 N -0.193 5.193 15 C -0.008 4.008 16 C -0.188 4.188 17 C -0.106 4.106 18 C -0.150 4.150 19 C -0.117 4.117 20 C -0.106 4.106 21 Cl -0.051 7.051 22 C -0.085 4.085 23 H 0.058 0.942 24 H 0.205 0.795 25 H 0.101 0.899 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.170 0.830 30 H 0.178 0.822 31 H 0.179 0.821 32 H 0.163 0.837 33 H 0.096 0.904 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.741 -21.423 0.943 21.514 hybrid contribution 0.118 1.228 -0.324 1.275 sum 1.859 -20.195 0.619 20.290 Atomic orbital electron populations 1.69865 1.06775 1.25767 1.59829 1.25556 0.96260 1.01075 1.04034 0.85086 0.78355 0.79952 0.76449 1.18743 1.22309 1.22332 1.19694 0.91483 0.85123 1.40503 0.90325 1.42631 1.05380 1.00585 1.88231 1.21192 0.93655 0.85011 0.94525 0.92305 1.23022 1.00224 0.96090 0.98800 1.23350 0.91288 0.97762 0.96311 1.62390 1.32927 1.14332 1.09631 1.19224 0.95472 0.90018 0.96051 1.21661 1.01466 0.91829 1.03853 1.21510 0.95824 0.96812 0.96409 1.21425 0.96982 0.99334 0.97305 1.21228 1.00429 0.89744 1.00259 1.20970 0.98564 0.89663 1.01418 1.98382 1.80713 1.46102 1.79949 1.23427 0.97663 0.95942 0.91490 0.94236 0.79549 0.89888 0.93146 0.89947 0.89565 0.83033 0.82194 0.82131 0.83740 0.90397 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.54 13.06 21.65 0.28 -61.26 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 3 Si 0.97 46.98 29.55 68.60 2.03 49.01 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 7 C -0.24 -13.28 9.97 84.03 0.84 -12.44 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 9 N -0.73 -37.93 5.04 -318.70 -1.61 -39.54 16 10 C 0.17 6.65 3.70 45.89 0.17 6.82 16 11 H 0.06 2.31 8.11 -2.39 -0.02 2.29 16 12 C -0.14 -4.81 6.78 31.49 0.21 -4.60 16 13 C 0.04 1.09 5.45 86.42 0.47 1.57 16 14 N -0.48 -15.79 5.10 -680.80 -3.47 -19.26 16 15 C 0.09 2.60 5.39 38.21 0.21 2.80 16 16 C -0.17 -3.55 8.87 22.39 0.20 -3.35 16 17 C -0.09 -1.39 10.04 22.26 0.22 -1.16 16 18 C -0.13 -2.11 10.04 22.29 0.22 -1.89 16 19 C -0.10 -2.09 9.82 22.27 0.22 -1.87 16 20 C -0.08 -2.20 6.17 22.44 0.14 -2.06 16 21 Cl -0.08 -2.66 26.00 -2.72 -0.07 -2.73 16 22 C 0.04 1.44 5.29 86.45 0.46 1.90 16 23 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 24 H 0.37 21.55 7.75 -92.71 -0.72 20.83 16 25 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 26 H 0.05 2.06 7.95 -2.39 -0.02 2.04 16 27 H 0.08 1.79 6.01 -2.39 -0.01 1.78 16 28 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.15 2.65 5.62 -2.91 -0.02 2.63 16 30 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 31 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 32 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 33 H 0.08 3.15 5.92 -2.39 -0.01 3.14 16 34 H 0.06 1.97 7.98 -2.39 -0.02 1.96 16 Total: -1.00 -68.47 293.04 1.39 -67.09 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.40 Total: 25.04 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 3.83 Total: -18.35 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -4.79 Total: -120.06 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -0.07 Total: -2.73 kcal Total: -68.47 1.39 -67.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259403365.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.476 kcal (2) G-P(sol) polarization free energy of solvation -68.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds