Wall clock time and date at job start Mon Mar 30 2020 07:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.33947 * 125.41323 * 2 1 4 4 O 1.21580 * 123.04504 * 0.02562 * 3 2 1 5 5 N 1.33954 * 113.91375 * 179.97438 * 3 2 1 6 6 C 1.46501 * 125.40730 * 179.97438 * 5 3 2 7 7 C 1.50702 * 109.47010 * 270.00139 * 6 5 3 8 8 H 1.07996 * 119.99873 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99772 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99939 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00147 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46941 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47218 * 120.00008 * 11 9 7 14 14 H 1.48497 * 109.47355 * 240.00388 * 11 9 7 15 15 C 1.47046 * 109.18206 * 359.97438 * 5 3 2 16 16 C 1.47061 * 125.40688 * 179.97438 * 2 1 3 17 17 H 1.09005 * 110.67009 * 298.65652 * 16 2 1 18 18 C 1.50695 * 110.54841 * 61.40730 * 16 2 1 19 19 C 1.33389 * 125.20134 * 214.15577 * 18 16 2 20 20 C 1.38433 * 114.92022 * 180.26674 * 19 18 16 21 21 C 1.33388 * 114.91766 * 0.02562 * 20 19 18 22 22 S 1.75879 * 109.59837 * 0.02562 * 21 20 19 23 23 H 1.09004 * 109.47486 * 270.00563 * 1 2 3 24 24 H 1.09004 * 109.46816 * 30.00418 * 1 2 3 25 25 H 1.09007 * 109.47683 * 149.99875 * 1 2 3 26 26 H 1.09001 * 109.47234 * 30.00319 * 6 5 3 27 27 H 1.08998 * 109.47162 * 149.99848 * 6 5 3 28 28 H 0.97006 * 119.99633 * 179.97438 * 10 9 7 29 29 H 1.09002 * 110.55132 * 241.40539 * 15 5 3 30 30 H 1.09002 * 110.67686 * 118.65065 * 15 5 3 31 31 H 1.07998 * 122.54399 * 0.25181 * 19 18 16 32 32 H 1.08000 * 122.53671 * 180.02562 * 20 19 18 33 33 H 1.08007 * 125.20125 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2411 1.0917 0.0000 4 8 1.7947 2.2225 0.0005 5 7 3.5537 0.8246 0.0005 6 6 4.6236 1.8255 0.0001 7 6 4.9907 2.1677 -1.4208 8 1 4.4787 1.6874 -2.2415 9 6 5.9811 3.0932 -1.6731 10 7 6.6056 3.6770 -0.6737 11 14 6.4368 3.5170 -3.4344 12 1 5.5939 2.7269 -4.3675 13 1 6.2115 4.9659 -3.6691 14 1 7.8675 3.1944 -3.6669 15 6 3.7503 -0.6326 0.0016 16 6 2.3170 -1.1986 0.0005 17 1 2.1412 -1.7952 0.8958 18 6 2.0730 -2.0216 -1.2381 19 6 2.1234 -3.3531 -1.2988 20 6 1.8689 -3.8900 -2.5492 21 6 1.6125 -2.9944 -3.5038 22 16 1.6876 -1.3728 -2.8269 23 1 -0.3634 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3635 -0.8900 -0.5139 26 1 4.2807 2.7240 0.5133 27 1 5.4967 1.4242 0.5145 28 1 7.3026 4.3279 -0.8513 29 1 4.2853 -0.9459 0.8981 30 1 4.2866 -0.9493 -0.8930 31 1 2.3461 -3.9660 -0.4379 32 1 1.8774 -4.9535 -2.7374 33 1 1.3931 -3.2290 -4.5350 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259403912.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:03 Heat of formation + Delta-G solvation = 30.616950 kcal Electronic energy + Delta-G solvation = -18084.764875 eV Core-core repulsion = 15238.194189 eV Total energy + Delta-G solvation = -2846.570685 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.51225 -37.76957 -35.61729 -34.53118 -32.51220 -30.84786 -28.65912 -26.72982 -26.05358 -24.08767 -22.77478 -21.66570 -19.41985 -19.09228 -17.40464 -16.68929 -16.04634 -15.80075 -15.25445 -14.81245 -14.41197 -14.00309 -13.60995 -13.11039 -13.07435 -12.87214 -12.64588 -12.24543 -12.17227 -11.91725 -11.80285 -11.60972 -11.25330 -10.88330 -10.64402 -10.57866 -10.13933 -9.62068 -9.30636 -8.72785 -8.47450 -8.43939 -8.39204 -7.58783 -6.04511 -4.09193 0.98131 1.68138 2.12553 2.68976 3.13415 3.30802 3.38327 3.43817 3.89589 4.31544 4.49552 4.72679 4.83788 5.04271 5.14864 5.29095 5.32735 5.44586 5.53080 5.70753 5.82577 5.91412 6.01308 6.05641 6.25673 6.33589 6.47386 7.05779 7.29077 7.50917 7.68391 7.95119 8.22104 8.45100 8.92901 9.35986 9.58107 11.03186 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.020002 B = 0.006751 C = 0.005794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.526334 B = 4146.507910 C = 4831.354922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.644 5.644 3 C 0.693 3.307 4 O -0.583 6.583 5 N -0.611 5.611 6 C 0.277 3.723 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.061 3.939 10 N -0.896 5.896 11 Si 0.898 3.102 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.283 1.283 15 C 0.103 3.897 16 C 0.195 3.805 17 H 0.101 0.899 18 C -0.187 4.187 19 C -0.135 4.135 20 C -0.138 4.138 21 C -0.228 4.228 22 S 0.146 5.854 23 H 0.049 0.951 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.037 0.963 28 H 0.263 0.737 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.574 -16.609 -0.844 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.384 5.384 3 C 0.395 3.605 4 O -0.460 6.460 5 N -0.348 5.348 6 C 0.159 3.841 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.140 4.140 10 N -0.535 5.535 11 Si 0.725 3.275 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.209 1.209 15 C -0.022 4.022 16 C 0.088 3.912 17 H 0.119 0.881 18 C -0.306 4.306 19 C -0.166 4.166 20 C -0.169 4.169 21 C -0.364 4.364 22 S 0.411 5.589 23 H 0.067 0.933 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.877 -14.266 -1.398 17.407 hybrid contribution 0.589 -1.394 -0.533 1.605 sum -9.288 -15.660 -1.931 18.309 Atomic orbital electron populations 1.21241 0.76813 1.02591 1.01083 1.47250 1.05708 1.05343 1.80102 1.15923 0.82202 0.84096 0.78257 1.90871 1.76119 1.20708 1.58348 1.47774 1.05540 1.05785 1.75657 1.19131 0.82252 0.85229 0.97499 1.21533 1.19013 1.23626 0.92475 0.92226 1.24922 0.95979 0.95644 0.97505 1.69940 1.24820 1.28048 1.30672 0.86443 0.78032 0.78394 0.84607 1.19716 1.20823 1.20934 1.22289 0.93776 0.83024 1.03139 1.20233 0.90906 0.86840 0.93253 0.88132 1.24944 1.09503 0.97377 0.98762 1.20027 1.04442 0.93285 0.98835 1.20081 1.03837 1.00591 0.92374 1.25791 1.10138 0.96751 1.03697 1.84932 1.67147 1.06276 1.00562 0.93281 0.90676 0.91764 0.93774 0.94549 0.92716 0.90289 0.90052 0.84257 0.84617 0.82205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 1.72 10.89 59.84 0.65 2.37 16 2 N -0.64 -11.02 2.80 -180.43 -0.51 -11.53 16 3 C 0.69 15.70 8.29 -88.39 -0.73 14.97 16 4 O -0.58 -15.77 17.02 5.30 0.09 -15.68 16 5 N -0.61 -13.72 2.94 -180.19 -0.53 -14.25 16 6 C 0.28 7.37 5.75 -5.19 -0.03 7.34 16 7 C -0.53 -15.18 9.39 -34.44 -0.32 -15.50 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 11 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 C 0.10 1.72 7.32 -3.17 -0.02 1.70 16 16 C 0.19 2.75 3.87 -68.20 -0.26 2.49 16 17 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 18 C -0.19 -2.46 4.89 -36.01 -0.18 -2.63 16 19 C -0.13 -1.46 10.05 -41.20 -0.41 -1.87 16 20 C -0.14 -1.43 10.18 -41.20 -0.42 -1.85 16 21 C -0.23 -2.56 11.23 29.04 0.33 -2.23 16 22 S 0.15 2.09 23.02 -107.50 -2.47 -0.39 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 1.13 7.92 -51.93 -0.41 0.72 16 25 H 0.06 0.73 7.82 -51.92 -0.41 0.32 16 26 H 0.04 1.31 7.91 -51.93 -0.41 0.90 16 27 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.08 1.40 7.72 -51.93 -0.40 1.00 16 31 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.16 1.44 8.06 -52.48 -0.42 1.01 16 LS Contribution 301.48 15.07 4.54 4.54 Total: -1.00 -34.20 301.48 -8.80 -43.00 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -4.13 Total: -3.33 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -1.50 Total: 6.46 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.30 Total: -51.68 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: 0.09 Total: -15.68 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.47 Total: -0.39 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.20 -8.80 -43.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259403912.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.620 kcal (2) G-P(sol) polarization free energy of solvation -34.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds