Wall clock time and date at job start Mon Mar 30 2020 07:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.33947 * 125.41323 * 2 1 4 4 O 1.21580 * 123.04504 * 0.02562 * 3 2 1 5 5 N 1.33954 * 113.91375 * 179.97438 * 3 2 1 6 6 C 1.46501 * 125.40730 * 179.97438 * 5 3 2 7 7 C 1.50702 * 109.47010 * 270.00139 * 6 5 3 8 8 H 1.07996 * 119.99873 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99772 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99939 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00147 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46941 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47218 * 120.00008 * 11 9 7 14 14 H 1.48497 * 109.47355 * 240.00388 * 11 9 7 15 15 C 1.47046 * 109.18206 * 359.97438 * 5 3 2 16 16 C 1.47061 * 125.40688 * 179.97438 * 2 1 3 17 17 H 1.09005 * 110.67009 * 298.65652 * 16 2 1 18 18 C 1.50695 * 110.54841 * 61.40730 * 16 2 1 19 19 C 1.33389 * 125.20134 * 214.15577 * 18 16 2 20 20 C 1.38433 * 114.92022 * 180.26674 * 19 18 16 21 21 C 1.33388 * 114.91766 * 0.02562 * 20 19 18 22 22 S 1.75879 * 109.59837 * 0.02562 * 21 20 19 23 23 H 1.09004 * 109.47486 * 270.00563 * 1 2 3 24 24 H 1.09004 * 109.46816 * 30.00418 * 1 2 3 25 25 H 1.09007 * 109.47683 * 149.99875 * 1 2 3 26 26 H 1.09001 * 109.47234 * 30.00319 * 6 5 3 27 27 H 1.08998 * 109.47162 * 149.99848 * 6 5 3 28 28 H 0.97006 * 119.99633 * 179.97438 * 10 9 7 29 29 H 1.09002 * 110.55132 * 241.40539 * 15 5 3 30 30 H 1.09002 * 110.67686 * 118.65065 * 15 5 3 31 31 H 1.07998 * 122.54399 * 0.25181 * 19 18 16 32 32 H 1.08000 * 122.53671 * 180.02562 * 20 19 18 33 33 H 1.08007 * 125.20125 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2411 1.0917 0.0000 4 8 1.7947 2.2225 0.0005 5 7 3.5537 0.8246 0.0005 6 6 4.6236 1.8255 0.0001 7 6 4.9907 2.1677 -1.4208 8 1 4.4787 1.6874 -2.2415 9 6 5.9811 3.0932 -1.6731 10 7 6.6056 3.6770 -0.6737 11 14 6.4368 3.5170 -3.4344 12 1 5.5939 2.7269 -4.3675 13 1 6.2115 4.9659 -3.6691 14 1 7.8675 3.1944 -3.6669 15 6 3.7503 -0.6326 0.0016 16 6 2.3170 -1.1986 0.0005 17 1 2.1412 -1.7952 0.8958 18 6 2.0730 -2.0216 -1.2381 19 6 2.1234 -3.3531 -1.2988 20 6 1.8689 -3.8900 -2.5492 21 6 1.6125 -2.9944 -3.5038 22 16 1.6876 -1.3728 -2.8269 23 1 -0.3634 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3635 -0.8900 -0.5139 26 1 4.2807 2.7240 0.5133 27 1 5.4967 1.4242 0.5145 28 1 7.3026 4.3279 -0.8513 29 1 4.2853 -0.9459 0.8981 30 1 4.2866 -0.9493 -0.8930 31 1 2.3461 -3.9660 -0.4379 32 1 1.8774 -4.9535 -2.7374 33 1 1.3931 -3.2290 -4.5350 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259403912.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:02 Heat of formation + Delta-G solvation = 8.589152 kcal Electronic energy + Delta-G solvation = -18085.720072 eV Core-core repulsion = 15238.194189 eV Total energy + Delta-G solvation = -2847.525882 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.03972 -38.77369 -37.25138 -36.26413 -34.53739 -32.06677 -30.31636 -28.12081 -27.57105 -25.40941 -24.42163 -22.98511 -20.81534 -20.20863 -18.75976 -18.57049 -17.67182 -17.17169 -16.75479 -16.31894 -15.98945 -15.44569 -14.93902 -14.81228 -14.53742 -14.06636 -13.89842 -13.53981 -13.41634 -13.23932 -13.16068 -13.01014 -12.78661 -12.71816 -12.58969 -12.22719 -11.73307 -11.51193 -11.17037 -10.66712 -10.09227 -9.58382 -9.41688 -9.28314 -8.24611 -6.39770 0.07101 0.72517 1.22064 1.34325 1.36728 1.48311 1.62464 1.93421 2.19175 2.37336 2.93948 3.04344 3.53806 3.65116 3.98334 4.20601 4.29347 4.55439 4.60007 4.62623 4.76444 4.79052 4.84081 4.86057 5.10478 5.19513 5.37727 5.41285 5.58526 5.66131 5.82181 5.95874 6.03957 6.68713 6.78505 7.27605 7.66185 8.81820 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.020002 B = 0.006751 C = 0.005794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.526334 B = 4146.507910 C = 4831.354922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.634 5.634 3 C 0.683 3.317 4 O -0.643 6.643 5 N -0.624 5.624 6 C 0.293 3.707 7 C -0.546 4.546 8 H 0.047 0.953 9 C 0.013 3.987 10 N -0.925 5.925 11 Si 0.965 3.035 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.265 1.265 15 C 0.097 3.903 16 C 0.203 3.797 17 H 0.146 0.854 18 C -0.202 4.202 19 C -0.109 4.109 20 C -0.135 4.135 21 C -0.212 4.212 22 S 0.046 5.954 23 H 0.071 0.929 24 H 0.052 0.948 25 H 0.093 0.907 26 H 0.000 1.000 27 H 0.036 0.964 28 H 0.269 0.731 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.175 0.825 32 H 0.171 0.829 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.732 -20.131 -1.266 22.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.372 5.372 3 C 0.385 3.615 4 O -0.525 6.525 5 N -0.360 5.360 6 C 0.173 3.827 7 C -0.584 4.584 8 H 0.065 0.935 9 C -0.187 4.187 10 N -0.565 5.565 11 Si 0.789 3.211 12 H -0.196 1.196 13 H -0.205 1.205 14 H -0.190 1.190 15 C -0.027 4.027 16 C 0.098 3.902 17 H 0.163 0.837 18 C -0.320 4.320 19 C -0.140 4.140 20 C -0.165 4.165 21 C -0.348 4.348 22 S 0.309 5.691 23 H 0.089 0.911 24 H 0.071 0.929 25 H 0.112 0.888 26 H 0.018 0.982 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.126 0.874 30 H 0.092 0.908 31 H 0.193 0.807 32 H 0.188 0.812 33 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -10.053 -17.879 -1.812 20.591 hybrid contribution 0.611 -0.432 -0.400 0.849 sum -9.442 -18.311 -2.212 20.720 Atomic orbital electron populations 1.21453 0.74805 1.02967 1.02568 1.47271 1.06735 1.04787 1.78396 1.16237 0.82650 0.84574 0.78059 1.90805 1.77180 1.23542 1.61002 1.47581 1.04897 1.07842 1.75635 1.18579 0.83093 0.85008 0.96039 1.21715 1.19402 1.24295 0.93022 0.93463 1.25786 0.95719 0.95227 1.01937 1.70036 1.25207 1.28392 1.32822 0.85412 0.78482 0.78014 0.79197 1.19630 1.20457 1.18978 1.22641 0.96393 0.79474 1.04163 1.20474 0.88086 0.85899 0.95740 0.83666 1.24725 1.12418 0.97919 0.96928 1.20459 1.01073 0.92355 1.00143 1.20517 1.02262 1.02078 0.91691 1.26004 1.09633 0.94252 1.04910 1.85341 1.69520 1.10418 1.03774 0.91095 0.92863 0.88834 0.98212 0.94622 0.92180 0.87376 0.90847 0.80731 0.81161 0.80226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.27 10.89 127.77 1.39 4.66 16 2 N -0.63 -21.32 2.80 -843.49 -2.37 -23.69 16 3 C 0.68 32.03 8.29 179.57 1.49 33.52 16 4 O -0.64 -36.89 17.02 -3.97 -0.07 -36.96 16 5 N -0.62 -28.86 2.94 -842.74 -2.48 -31.34 16 6 C 0.29 16.38 5.75 85.63 0.49 16.87 16 7 C -0.55 -32.59 9.39 25.60 0.24 -32.35 16 8 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 9 C 0.01 0.74 5.46 84.65 0.46 1.21 16 10 N -0.92 -56.21 13.29 21.45 0.28 -55.92 16 11 Si 0.96 45.95 29.54 68.60 2.03 47.98 16 12 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 14 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 15 C 0.10 3.14 7.32 86.65 0.63 3.77 16 16 C 0.20 5.24 3.87 44.51 0.17 5.41 16 17 H 0.15 2.51 8.14 -2.38 -0.02 2.49 16 18 C -0.20 -4.75 4.89 24.59 0.12 -4.63 16 19 C -0.11 -1.83 10.05 21.22 0.21 -1.62 16 20 C -0.14 -2.16 10.18 21.22 0.22 -1.94 16 21 C -0.21 -4.17 11.23 66.72 0.75 -3.42 16 22 S 0.05 1.28 23.02 -56.49 -1.30 -0.02 16 23 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.05 1.65 7.92 -2.38 -0.02 1.63 16 25 H 0.09 1.93 7.82 -2.38 -0.02 1.91 16 26 H 0.00 -0.01 7.91 -2.39 -0.02 -0.03 16 27 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 29 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.07 2.49 7.72 -2.39 -0.02 2.47 16 31 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 33 H 0.18 2.70 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -79.28 301.48 3.39 -75.90 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: 1.10 Total: 2.57 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: 6.18 Total: 21.48 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -4.56 Total: -110.95 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -0.07 Total: -36.96 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -1.30 Total: -0.02 kcal Total: -79.28 3.39 -75.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259403912.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.488 kcal (2) G-P(sol) polarization free energy of solvation -79.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds