Wall clock time and date at job start Mon Mar 30 2020 06:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38267 * 120.12495 * 2 1 4 4 C 1.37940 * 120.36459 * 179.55755 * 3 2 1 5 5 C 1.50699 * 119.86805 * 180.26069 * 4 3 2 6 6 C 1.53000 * 109.46851 * 265.29543 * 5 4 3 7 7 C 1.50699 * 109.46851 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99885 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99853 * 180.02562 * 7 6 5 10 10 N 1.31505 * 119.99920 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99915 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47120 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.46936 * 119.99564 * 11 9 7 14 14 H 1.48491 * 109.47105 * 240.00043 * 11 9 7 15 15 C 1.39299 * 120.26628 * 0.55400 * 4 3 2 16 16 C 1.38865 * 118.88495 * 0.05042 * 15 4 3 17 17 C 1.37858 * 120.77382 * 359.50331 * 16 15 4 18 18 Cl 1.73608 * 120.01944 * 180.35738 * 17 16 15 19 19 C 1.51643 * 107.04711 * 179.05748 * 16 15 4 20 20 C 1.54711 * 101.92382 * 344.66387 * 19 16 15 21 21 O 1.36135 * 129.88369 * 180.29697 * 15 4 3 22 22 H 1.09002 * 109.47152 * 269.72606 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.72706 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.72687 * 1 2 3 25 25 H 1.07997 * 119.81463 * 359.82903 * 3 2 1 26 26 H 1.09004 * 109.46737 * 25.29201 * 5 4 3 27 27 H 1.08993 * 109.47058 * 145.29178 * 5 4 3 28 28 H 1.08998 * 109.46739 * 299.99361 * 6 5 4 29 29 H 1.08993 * 109.47588 * 59.99959 * 6 5 4 30 30 H 0.97001 * 120.00173 * 180.02562 * 10 9 7 31 31 H 1.08993 * 110.93785 * 102.82168 * 19 16 15 32 32 H 1.09005 * 110.93427 * 226.51215 * 19 16 15 33 33 H 1.09001 * 110.75252 * 266.95206 * 20 19 16 34 34 H 1.09008 * 110.90284 * 143.67345 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.1959 0.0000 4 6 3.5803 1.2017 0.0092 5 6 4.3253 2.5117 0.0150 6 6 4.6898 2.8974 -1.4200 7 6 5.4353 4.2070 -1.4141 8 1 5.6293 4.7138 -0.4802 9 6 5.8688 4.7589 -2.6010 10 7 5.6321 4.1421 -3.7380 11 14 6.7923 6.3827 -2.5937 12 1 6.9279 6.8688 -1.1971 13 1 8.1411 6.1876 -3.1835 14 1 6.0417 7.3826 -3.3947 15 6 4.2875 0.0016 0.0069 16 6 3.5805 -1.1936 -0.0058 17 6 2.2019 -1.1976 -0.0057 18 17 1.3378 -2.7034 -0.0123 19 6 4.6020 -2.3141 -0.0290 20 6 5.8935 -1.5611 -0.4272 21 8 5.6306 -0.2203 0.0200 22 1 -0.3633 -0.0049 1.0277 23 1 -0.3633 -0.8875 -0.5181 24 1 -0.3633 0.8925 -0.5096 25 1 1.6600 2.1306 -0.0028 26 1 3.6943 3.2865 0.4504 27 1 5.2353 2.4095 0.6062 28 1 5.3208 2.1226 -1.8553 29 1 3.7798 2.9996 -2.0111 30 1 5.9374 4.5301 -4.5730 31 1 4.7041 -2.7686 0.9563 32 1 4.3415 -3.0631 -0.7770 33 1 6.0381 -1.5866 -1.5072 34 1 6.7602 -1.9768 0.0869 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259482514.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:25 Heat of formation + Delta-G solvation = -37.178462 kcal Electronic energy + Delta-G solvation = -17680.380902 eV Core-core repulsion = 14796.533930 eV Total energy + Delta-G solvation = -2883.846972 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.95414 -37.88353 -36.36955 -34.28413 -32.56108 -32.21769 -30.05958 -28.58812 -26.54674 -25.05323 -23.12636 -21.76190 -21.07050 -19.71148 -17.30130 -16.79878 -16.35660 -15.95013 -15.01684 -14.46993 -13.93516 -13.78265 -13.59588 -13.21027 -12.94968 -12.81023 -12.45546 -12.25394 -11.94689 -11.77306 -11.71929 -11.51469 -11.23590 -10.92191 -10.88067 -10.75489 -10.45540 -10.23911 -9.81436 -9.55468 -9.06611 -8.33650 -8.31086 -7.68337 -5.97635 -4.00159 1.36811 1.45570 2.22190 3.32622 3.39934 3.44095 3.45517 3.82573 4.45627 4.48015 4.61805 5.00744 5.05807 5.17283 5.29644 5.38259 5.49299 5.52269 5.67423 5.72916 5.74317 5.80657 5.96900 6.06098 6.18519 6.33131 6.55963 6.64894 6.71119 6.89844 7.05314 7.40200 7.70393 7.84521 8.02363 8.43094 9.06718 9.63562 11.13626 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026471 B = 0.004969 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.498293 B = 5633.266070 C = 6278.273599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.106 4.106 3 C -0.078 4.078 4 C -0.064 4.064 5 C -0.076 4.076 6 C 0.032 3.968 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.057 3.943 10 N -0.895 5.895 11 Si 0.891 3.109 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.118 3.882 16 C -0.171 4.171 17 C -0.001 4.001 18 Cl -0.080 7.080 19 C -0.103 4.103 20 C 0.051 3.949 21 O -0.290 6.290 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.139 0.861 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.018 0.982 29 H 0.016 0.984 30 H 0.259 0.741 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.997 -13.580 7.878 17.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.107 4.107 3 C -0.096 4.096 4 C -0.065 4.065 5 C -0.113 4.113 6 C -0.005 4.005 7 C -0.557 4.557 8 H 0.075 0.925 9 C -0.144 4.144 10 N -0.534 5.534 11 Si 0.719 3.281 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.072 3.928 16 C -0.172 4.172 17 C -0.028 4.028 18 Cl -0.052 7.052 19 C -0.141 4.141 20 C -0.024 4.024 21 O -0.204 6.204 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.157 0.843 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.851 -13.560 7.748 17.054 hybrid contribution 0.472 0.498 -0.252 0.731 sum -6.379 -13.062 7.496 16.355 Atomic orbital electron populations 1.20739 0.90288 1.03182 1.02372 1.19571 0.96474 0.90924 1.03718 1.20674 0.92338 0.97301 0.99318 1.19761 0.92954 0.94298 0.99491 1.20786 0.98208 0.90181 1.02142 1.19056 0.96603 0.96272 0.88617 1.21276 1.35688 1.05927 0.92805 0.92527 1.25013 0.96210 0.97541 0.95627 1.69980 1.46856 1.38970 0.97638 0.86544 0.79607 0.83832 0.78083 1.19691 1.21033 1.21040 1.19195 0.83182 0.92999 0.97387 1.20406 0.92605 0.95577 1.08630 1.19727 0.89671 0.86267 1.07134 1.98316 1.77116 1.32705 1.97022 1.21743 0.92276 0.96755 1.03279 1.23823 0.97870 0.79987 1.00765 1.86918 1.19486 1.32361 1.81597 0.91200 0.91275 0.91104 0.84278 0.91963 0.91751 0.96369 0.96526 0.93088 0.89278 0.89142 0.90371 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.63 36.01 0.35 -0.91 16 2 C -0.11 -1.57 5.89 -104.53 -0.62 -2.18 16 3 C -0.08 -1.28 9.30 -39.68 -0.37 -1.65 16 4 C -0.06 -1.22 5.16 -104.34 -0.54 -1.76 16 5 C -0.08 -1.63 5.24 -27.88 -0.15 -1.77 16 6 C 0.03 0.83 4.95 -27.88 -0.14 0.70 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 10 N -0.90 -27.22 13.28 55.43 0.74 -26.49 16 11 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 15 C 0.12 2.17 6.74 -38.95 -0.26 1.90 16 16 C -0.17 -2.68 6.13 -104.06 -0.64 -3.32 16 17 C 0.00 -0.02 6.30 -39.64 -0.25 -0.27 16 18 Cl -0.08 -1.01 27.17 -51.86 -1.41 -2.42 16 19 C -0.10 -1.27 6.94 -26.52 -0.18 -1.45 16 20 C 0.05 0.66 8.01 38.06 0.30 0.97 16 21 O -0.29 -5.28 11.05 -20.17 -0.22 -5.50 16 22 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.07 0.76 6.92 -51.93 -0.36 0.40 16 24 H 0.07 0.74 8.09 -51.93 -0.42 0.33 16 25 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 26 H 0.06 1.24 8.05 -51.93 -0.42 0.83 16 27 H 0.06 1.40 8.12 -51.93 -0.42 0.98 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.10 1.04 8.14 -51.92 -0.42 0.62 16 LS Contribution 303.50 15.07 4.57 4.57 Total: -1.00 -31.59 303.50 -8.79 -40.37 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -4.54 Total: -3.96 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -2.90 Total: -23.35 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.74 Total: -26.49 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.22 Total: -5.50 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.41 Total: -2.42 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.59 -8.79 -40.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259482514.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.194 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds