Wall clock time and date at job start Mon Mar 30 2020 06:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38267 * 120.12495 * 2 1 4 4 C 1.37940 * 120.36459 * 179.55755 * 3 2 1 5 5 C 1.50699 * 119.86805 * 180.26069 * 4 3 2 6 6 C 1.53000 * 109.46851 * 265.29543 * 5 4 3 7 7 C 1.50699 * 109.46851 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99885 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99853 * 180.02562 * 7 6 5 10 10 N 1.31505 * 119.99920 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99915 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47120 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.46936 * 119.99564 * 11 9 7 14 14 H 1.48491 * 109.47105 * 240.00043 * 11 9 7 15 15 C 1.39299 * 120.26628 * 0.55400 * 4 3 2 16 16 C 1.38865 * 118.88495 * 0.05042 * 15 4 3 17 17 C 1.37858 * 120.77382 * 359.50331 * 16 15 4 18 18 Cl 1.73608 * 120.01944 * 180.35738 * 17 16 15 19 19 C 1.51643 * 107.04711 * 179.05748 * 16 15 4 20 20 C 1.54711 * 101.92382 * 344.66387 * 19 16 15 21 21 O 1.36135 * 129.88369 * 180.29697 * 15 4 3 22 22 H 1.09002 * 109.47152 * 269.72606 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.72706 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.72687 * 1 2 3 25 25 H 1.07997 * 119.81463 * 359.82903 * 3 2 1 26 26 H 1.09004 * 109.46737 * 25.29201 * 5 4 3 27 27 H 1.08993 * 109.47058 * 145.29178 * 5 4 3 28 28 H 1.08998 * 109.46739 * 299.99361 * 6 5 4 29 29 H 1.08993 * 109.47588 * 59.99959 * 6 5 4 30 30 H 0.97001 * 120.00173 * 180.02562 * 10 9 7 31 31 H 1.08993 * 110.93785 * 102.82168 * 19 16 15 32 32 H 1.09005 * 110.93427 * 226.51215 * 19 16 15 33 33 H 1.09001 * 110.75252 * 266.95206 * 20 19 16 34 34 H 1.09008 * 110.90284 * 143.67345 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.1959 0.0000 4 6 3.5803 1.2017 0.0092 5 6 4.3253 2.5117 0.0150 6 6 4.6898 2.8974 -1.4200 7 6 5.4353 4.2070 -1.4141 8 1 5.6293 4.7138 -0.4802 9 6 5.8688 4.7589 -2.6010 10 7 5.6321 4.1421 -3.7380 11 14 6.7923 6.3827 -2.5937 12 1 6.9279 6.8688 -1.1971 13 1 8.1411 6.1876 -3.1835 14 1 6.0417 7.3826 -3.3947 15 6 4.2875 0.0016 0.0069 16 6 3.5805 -1.1936 -0.0058 17 6 2.2019 -1.1976 -0.0057 18 17 1.3378 -2.7034 -0.0123 19 6 4.6020 -2.3141 -0.0290 20 6 5.8935 -1.5611 -0.4272 21 8 5.6306 -0.2203 0.0200 22 1 -0.3633 -0.0049 1.0277 23 1 -0.3633 -0.8875 -0.5181 24 1 -0.3633 0.8925 -0.5096 25 1 1.6600 2.1306 -0.0028 26 1 3.6943 3.2865 0.4504 27 1 5.2353 2.4095 0.6062 28 1 5.3208 2.1226 -1.8553 29 1 3.7798 2.9996 -2.0111 30 1 5.9374 4.5301 -4.5730 31 1 4.7041 -2.7686 0.9563 32 1 4.3415 -3.0631 -0.7770 33 1 6.0381 -1.5866 -1.5072 34 1 6.7602 -1.9768 0.0869 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259482514.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:25 Heat of formation + Delta-G solvation = -54.473507 kcal Electronic energy + Delta-G solvation = -17681.130871 eV Core-core repulsion = 14796.533930 eV Total energy + Delta-G solvation = -2884.596942 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.17238 -39.09505 -37.54062 -36.04024 -34.30561 -33.48099 -31.53859 -30.01859 -27.70180 -26.90272 -24.31922 -23.54506 -22.22748 -21.24104 -18.60232 -18.44699 -18.00105 -17.14849 -16.51711 -16.20915 -15.22024 -14.99551 -14.92170 -14.61883 -14.41891 -14.18885 -13.93427 -13.50069 -13.23714 -13.17820 -12.95911 -12.81256 -12.72025 -12.60429 -12.40213 -12.07754 -11.85098 -11.73684 -11.65293 -11.28833 -11.13786 -10.57135 -9.58475 -8.96668 -8.20037 -6.32191 0.09899 0.21354 1.07371 1.39970 1.40552 1.54272 2.27075 2.40683 2.58952 3.12763 3.37551 3.55958 3.81842 4.00584 4.11180 4.18879 4.31171 4.42508 4.53455 4.64331 4.74058 4.81263 4.82557 4.84728 4.90653 5.05737 5.06189 5.19893 5.29767 5.40993 5.48005 5.59495 5.75317 5.82388 6.13495 6.22643 6.83977 7.37094 8.91973 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026471 B = 0.004969 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.498293 B = 5633.266070 C = 6278.273599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.104 4.104 3 C -0.084 4.084 4 C -0.098 4.098 5 C -0.060 4.060 6 C 0.042 3.958 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.000 4.000 10 N -0.934 5.934 11 Si 0.967 3.033 12 H -0.261 1.261 13 H -0.279 1.279 14 H -0.276 1.276 15 C 0.091 3.909 16 C -0.172 4.172 17 C -0.007 4.007 18 Cl -0.053 7.053 19 C -0.095 4.095 20 C 0.042 3.958 21 O -0.324 6.324 22 H 0.088 0.912 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.151 0.849 26 H 0.073 0.927 27 H 0.053 0.947 28 H -0.018 1.018 29 H -0.007 1.007 30 H 0.264 0.736 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.733 -14.302 8.708 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.105 4.105 3 C -0.102 4.102 4 C -0.098 4.098 5 C -0.097 4.097 6 C 0.005 3.995 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.197 4.197 10 N -0.574 5.574 11 Si 0.791 3.209 12 H -0.184 1.184 13 H -0.204 1.204 14 H -0.201 1.201 15 C 0.046 3.954 16 C -0.174 4.174 17 C -0.033 4.033 18 Cl -0.024 7.024 19 C -0.132 4.132 20 C -0.032 4.032 21 O -0.238 6.238 22 H 0.107 0.893 23 H 0.095 0.905 24 H 0.099 0.901 25 H 0.169 0.831 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.000 1.000 29 H 0.011 0.989 30 H 0.072 0.928 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.092 0.908 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.596 -14.297 8.592 18.328 hybrid contribution 0.649 0.598 -0.525 1.027 sum -6.947 -13.699 8.067 17.349 Atomic orbital electron populations 1.20826 0.87699 1.04066 1.03807 1.19939 0.98270 0.90209 1.02073 1.20846 0.91453 0.98753 0.99108 1.19696 0.94105 0.93372 1.02675 1.20450 0.98387 0.92378 0.98476 1.18844 0.94522 0.94710 0.91383 1.21704 1.36151 1.06853 0.93291 0.91994 1.25996 0.97019 1.01649 0.95068 1.70118 1.47924 1.40968 0.98436 0.85366 0.78055 0.78742 0.78696 1.18449 1.20437 1.20111 1.19425 0.83672 0.93834 0.98490 1.20782 0.93399 0.95853 1.07357 1.19931 0.89794 0.87568 1.06039 1.98323 1.76416 1.30873 1.96826 1.21831 0.90395 0.95913 1.05046 1.24159 0.99724 0.78251 1.01091 1.86863 1.19800 1.35112 1.82065 0.89342 0.90528 0.90113 0.83127 0.90865 0.92854 0.99990 0.98910 0.92760 0.87111 0.87225 0.90759 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 9.63 71.24 0.69 -1.52 16 2 C -0.10 -2.93 5.89 -19.80 -0.12 -3.05 16 3 C -0.08 -2.75 9.30 22.21 0.21 -2.54 16 4 C -0.10 -3.84 5.16 -19.68 -0.10 -3.94 16 5 C -0.06 -2.67 5.24 29.85 0.16 -2.52 16 6 C 0.04 2.37 4.95 29.85 0.15 2.52 16 7 C -0.54 -31.89 9.11 25.60 0.23 -31.66 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.00 0.02 5.46 84.66 0.46 0.48 16 10 N -0.93 -58.29 13.28 21.45 0.28 -58.01 16 11 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 12 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 14 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 15 C 0.09 3.43 6.74 22.68 0.15 3.59 16 16 C -0.17 -5.28 6.13 -19.50 -0.12 -5.40 16 17 C -0.01 -0.19 6.30 22.23 0.14 -0.05 16 18 Cl -0.05 -1.20 27.17 -2.72 -0.07 -1.27 16 19 C -0.10 -2.16 6.94 30.73 0.21 -1.94 16 20 C 0.04 1.07 8.01 72.57 0.58 1.65 16 21 O -0.32 -12.17 11.05 -95.08 -1.05 -13.22 16 22 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.08 1.46 6.92 -2.39 -0.02 1.45 16 24 H 0.08 1.51 8.09 -2.38 -0.02 1.49 16 25 H 0.15 4.41 8.06 -2.91 -0.02 4.39 16 26 H 0.07 3.02 8.05 -2.38 -0.02 3.00 16 27 H 0.05 2.44 8.12 -2.39 -0.02 2.42 16 28 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 29 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.14 2.51 8.14 -2.38 -0.02 2.49 16 Total: -1.00 -70.11 303.50 4.92 -65.19 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: 1.09 Total: 4.62 kcal Atomic # 6 Polarization: -47.02 SS G_CDS: 2.64 Total: -44.38 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.28 Total: -58.01 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -1.05 Total: -13.22 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.07 Total: -1.27 kcal Total: -70.11 4.92 -65.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259482514.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.717 kcal (2) G-P(sol) polarization free energy of solvation -70.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds