Wall clock time and date at job start Mon Mar 30 2020 06:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00119 * 2 1 4 4 H 1.48503 * 109.47175 * 240.00070 * 3 2 1 5 5 H 1.48504 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47447 * 120.00026 * 3 2 1 7 7 C 1.37880 * 119.99632 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99584 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00143 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46929 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47233 * 180.02562 * 10 9 7 12 12 C 1.50704 * 109.47557 * 179.97438 * 11 10 9 13 13 C 1.38260 * 120.12432 * 265.00337 * 12 11 10 14 14 C 1.37941 * 120.36273 * 179.87214 * 13 12 11 15 15 C 1.39298 * 120.27065 * 0.02562 * 14 13 12 16 16 C 1.38862 * 118.87881 * 0.26175 * 15 14 13 17 17 C 1.37854 * 120.78272 * 359.54408 * 16 15 14 18 18 Cl 1.73597 * 120.02096 * 180.29418 * 17 16 15 19 19 C 1.51645 * 107.03618 * 179.54175 * 16 15 14 20 20 C 1.54717 * 101.93768 * 344.30747 * 19 16 15 21 21 O 1.36138 * 129.86792 * 180.48619 * 15 14 13 22 22 H 0.96998 * 119.99492 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46931 * 60.00023 * 9 7 2 24 24 H 1.09002 * 109.47038 * 299.99803 * 9 7 2 25 25 H 1.09001 * 109.47131 * 60.00346 * 10 9 7 26 26 H 1.09002 * 109.47263 * 299.99866 * 10 9 7 27 27 H 1.09008 * 109.47153 * 60.00000 * 11 10 9 28 28 H 1.09004 * 109.47290 * 300.00361 * 11 10 9 29 29 H 1.08000 * 119.82104 * 359.89469 * 13 12 11 30 30 H 1.07998 * 119.86351 * 179.97438 * 14 13 12 31 31 H 1.09002 * 110.94318 * 102.47964 * 19 16 15 32 32 H 1.08997 * 110.94282 * 226.13742 * 19 16 15 33 33 H 1.09001 * 110.74594 * 143.69649 * 20 19 16 34 34 H 1.08994 * 110.74472 * 267.04584 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4594 -6.1326 -0.0007 13 6 2.8311 -6.7271 -1.1924 14 6 3.7290 -7.7742 -1.1989 15 6 4.2697 -8.2431 -0.0038 16 6 3.8848 -7.6425 1.1876 17 6 2.9903 -6.5936 1.1922 18 17 2.5287 -5.8524 2.6925 19 6 4.6172 -8.3610 2.3042 20 6 5.0995 -9.6483 1.5942 21 8 5.1660 -9.2441 0.2152 22 1 -0.4849 0.8401 0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8718 -3.6044 0.8906 26 1 2.8718 -3.6044 -0.8895 27 1 0.8538 -5.0446 -0.8904 28 1 0.8532 -5.0451 0.8896 29 1 2.4164 -6.3695 -2.1233 30 1 4.0134 -8.2330 -2.1344 31 1 5.4627 -7.7712 2.6583 32 1 3.9400 -8.5990 3.1244 33 1 6.0833 -9.9445 1.9582 34 1 4.3787 -10.4551 1.7261 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259570518.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:46 Heat of formation + Delta-G solvation = -37.345829 kcal Electronic energy + Delta-G solvation = -17258.778923 eV Core-core repulsion = 14374.924694 eV Total energy + Delta-G solvation = -2883.854230 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.19825 -38.16331 -36.19876 -34.46196 -32.76729 -32.34609 -29.92811 -29.25433 -26.64972 -23.91172 -23.26918 -21.98668 -21.04725 -19.97134 -17.59595 -17.04596 -16.37528 -16.21935 -15.16149 -14.65131 -14.44716 -14.09725 -13.54667 -13.48596 -13.35676 -12.97913 -12.44612 -12.15520 -12.00822 -11.68114 -11.61865 -11.39497 -11.05188 -10.89949 -10.80470 -10.66419 -10.47024 -10.33424 -9.60642 -9.28887 -9.05775 -8.73498 -8.29770 -8.00307 -5.95334 -3.97138 1.11209 1.24582 2.25676 3.08076 3.36387 3.40367 3.43279 3.54982 4.24290 4.36119 4.50034 4.74525 4.86604 5.00604 5.13456 5.22760 5.31700 5.40373 5.50391 5.57088 5.67017 5.85545 6.06726 6.11070 6.15166 6.32325 6.42528 6.54452 6.84589 6.94269 7.01341 7.19407 7.73173 7.88771 8.05491 8.48631 9.09795 9.66468 11.16001 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.032041 B = 0.004147 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.656989 B = 6750.216898 C = 6996.437950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.053 0.947 9 C 0.022 3.978 10 C -0.102 4.102 11 C -0.084 4.084 12 C -0.082 4.082 13 C -0.075 4.075 14 C -0.131 4.131 15 C 0.101 3.899 16 C -0.170 4.170 17 C 0.013 3.987 18 Cl -0.058 7.058 19 C -0.107 4.107 20 C 0.053 3.947 21 O -0.304 6.304 22 H 0.260 0.740 23 H 0.015 0.985 24 H 0.016 0.984 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.142 0.858 30 H 0.131 0.869 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.485 -19.764 2.599 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.140 4.140 11 C -0.121 4.121 12 C -0.083 4.083 13 C -0.093 4.093 14 C -0.149 4.149 15 C 0.056 3.944 16 C -0.171 4.171 17 C -0.014 4.014 18 Cl -0.029 7.029 19 C -0.144 4.144 20 C -0.022 4.022 21 O -0.219 6.219 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.035 0.965 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.160 0.840 30 H 0.149 0.851 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.124 0.876 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.445 -19.692 2.598 21.212 hybrid contribution 0.420 1.046 0.339 1.177 sum 7.865 -18.646 2.937 20.449 Atomic orbital electron populations 1.69956 1.06020 1.26600 1.51031 1.25012 0.94827 0.99151 0.95430 0.86686 0.79607 0.83260 0.78612 1.20262 1.21315 1.20284 1.21231 0.92994 0.91136 1.50349 0.92824 1.19092 0.93956 0.91209 0.97192 1.21614 0.99051 0.92688 1.00610 1.20813 0.95940 0.92230 1.03108 1.20022 0.99453 0.98096 0.90689 1.20810 0.96294 0.94285 0.97902 1.20313 0.99187 0.99619 0.95825 1.19320 0.91158 0.89917 0.94035 1.20413 1.01639 0.99270 0.95798 1.19992 0.98286 0.95144 0.87935 1.98377 1.91175 1.81666 1.31651 1.21776 1.00269 0.95211 0.97124 1.23833 1.02975 0.96601 0.78773 1.86833 1.54823 1.50665 1.29546 0.93020 0.96632 0.96546 0.93047 0.93388 0.90953 0.90710 0.84048 0.85065 0.88869 0.88851 0.87580 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.10 -2.14 5.13 -26.73 -0.14 -2.28 16 11 C -0.08 -1.44 4.87 -27.88 -0.14 -1.58 16 12 C -0.08 -1.25 5.14 -104.53 -0.54 -1.79 16 13 C -0.07 -0.99 9.66 -39.68 -0.38 -1.38 16 14 C -0.13 -1.63 10.06 -39.30 -0.40 -2.03 16 15 C 0.10 1.33 7.04 -38.96 -0.27 1.06 16 16 C -0.17 -2.26 6.13 -104.07 -0.64 -2.90 16 17 C 0.01 0.20 6.30 -39.64 -0.25 -0.05 16 18 Cl -0.06 -0.88 27.06 -51.86 -1.40 -2.28 16 19 C -0.11 -1.05 6.93 -26.51 -0.18 -1.23 16 20 C 0.05 0.45 8.02 38.06 0.31 0.75 16 21 O -0.30 -3.69 11.10 -20.18 -0.22 -3.91 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 1.10 7.92 -51.93 -0.41 0.69 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.07 1.17 8.05 -51.92 -0.42 0.75 16 28 H 0.07 1.31 7.14 -51.93 -0.37 0.94 16 29 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 303.41 15.07 4.57 4.57 Total: -1.00 -31.58 303.41 -9.07 -40.64 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: -4.55 Total: -4.80 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: -3.18 Total: -24.68 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.74 Total: -26.50 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.22 Total: -3.91 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.40 Total: -2.28 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.58 -9.07 -40.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259570518.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.296 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds