Wall clock time and date at job start Mon Mar 30 2020 06:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00119 * 2 1 4 4 H 1.48503 * 109.47175 * 240.00070 * 3 2 1 5 5 H 1.48504 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47447 * 120.00026 * 3 2 1 7 7 C 1.37880 * 119.99632 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99584 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00143 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46929 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47233 * 180.02562 * 10 9 7 12 12 C 1.50704 * 109.47557 * 179.97438 * 11 10 9 13 13 C 1.38260 * 120.12432 * 265.00337 * 12 11 10 14 14 C 1.37941 * 120.36273 * 179.87214 * 13 12 11 15 15 C 1.39298 * 120.27065 * 0.02562 * 14 13 12 16 16 C 1.38862 * 118.87881 * 0.26175 * 15 14 13 17 17 C 1.37854 * 120.78272 * 359.54408 * 16 15 14 18 18 Cl 1.73597 * 120.02096 * 180.29418 * 17 16 15 19 19 C 1.51645 * 107.03618 * 179.54175 * 16 15 14 20 20 C 1.54717 * 101.93768 * 344.30747 * 19 16 15 21 21 O 1.36138 * 129.86792 * 180.48619 * 15 14 13 22 22 H 0.96998 * 119.99492 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46931 * 60.00023 * 9 7 2 24 24 H 1.09002 * 109.47038 * 299.99803 * 9 7 2 25 25 H 1.09001 * 109.47131 * 60.00346 * 10 9 7 26 26 H 1.09002 * 109.47263 * 299.99866 * 10 9 7 27 27 H 1.09008 * 109.47153 * 60.00000 * 11 10 9 28 28 H 1.09004 * 109.47290 * 300.00361 * 11 10 9 29 29 H 1.08000 * 119.82104 * 359.89469 * 13 12 11 30 30 H 1.07998 * 119.86351 * 179.97438 * 14 13 12 31 31 H 1.09002 * 110.94318 * 102.47964 * 19 16 15 32 32 H 1.08997 * 110.94282 * 226.13742 * 19 16 15 33 33 H 1.09001 * 110.74594 * 143.69649 * 20 19 16 34 34 H 1.08994 * 110.74472 * 267.04584 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4594 -6.1326 -0.0007 13 6 2.8311 -6.7271 -1.1924 14 6 3.7290 -7.7742 -1.1989 15 6 4.2697 -8.2431 -0.0038 16 6 3.8848 -7.6425 1.1876 17 6 2.9903 -6.5936 1.1922 18 17 2.5287 -5.8524 2.6925 19 6 4.6172 -8.3610 2.3042 20 6 5.0995 -9.6483 1.5942 21 8 5.1660 -9.2441 0.2152 22 1 -0.4849 0.8401 0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8718 -3.6044 0.8906 26 1 2.8718 -3.6044 -0.8895 27 1 0.8538 -5.0446 -0.8904 28 1 0.8532 -5.0451 0.8896 29 1 2.4164 -6.3695 -2.1233 30 1 4.0134 -8.2330 -2.1344 31 1 5.4627 -7.7712 2.6583 32 1 3.9400 -8.5990 3.1244 33 1 6.0833 -9.9445 1.9582 34 1 4.3787 -10.4551 1.7261 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259570518.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:46 Heat of formation + Delta-G solvation = -54.185807 kcal Electronic energy + Delta-G solvation = -17259.509160 eV Core-core repulsion = 14374.924694 eV Total energy + Delta-G solvation = -2884.584466 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.11340 -39.22751 -37.33137 -36.21044 -34.33827 -33.55894 -31.47508 -30.14499 -28.31459 -25.48768 -24.31077 -22.97440 -22.46449 -21.54654 -18.51729 -18.45929 -17.98933 -17.13840 -16.60922 -16.25461 -15.63850 -15.52048 -14.72142 -14.67462 -14.32855 -14.30239 -13.94164 -13.64107 -13.17544 -13.07844 -12.79036 -12.65385 -12.58383 -12.53614 -12.37930 -12.06744 -11.89253 -11.53615 -11.40934 -11.28538 -11.05652 -10.52843 -9.75720 -9.07089 -8.18108 -6.28937 0.09275 0.18792 1.14369 1.39804 1.42866 1.50787 2.23485 2.41716 2.52990 3.14599 3.39051 3.56755 3.84210 4.01402 4.11658 4.16862 4.32626 4.38861 4.51350 4.54696 4.71478 4.81193 4.83221 4.89946 4.96876 5.10124 5.17406 5.25108 5.28356 5.45374 5.48168 5.55348 5.80325 5.88636 6.08480 6.28288 6.87503 7.39798 8.93316 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.032041 B = 0.004147 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.656989 B = 6750.216898 C = 6996.437950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.086 4.086 11 C -0.072 4.072 12 C -0.104 4.104 13 C -0.073 4.073 14 C -0.130 4.130 15 C 0.098 3.902 16 C -0.179 4.179 17 C -0.001 4.001 18 Cl -0.070 7.070 19 C -0.108 4.108 20 C 0.052 3.948 21 O -0.315 6.315 22 H 0.263 0.737 23 H -0.004 1.004 24 H -0.010 1.010 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.159 0.841 30 H 0.156 0.844 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.136 0.864 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.206 -20.805 2.325 22.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.786 3.214 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.582 4.582 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.124 4.124 11 C -0.110 4.110 12 C -0.105 4.105 13 C -0.091 4.091 14 C -0.149 4.149 15 C 0.052 3.948 16 C -0.181 4.181 17 C -0.027 4.027 18 Cl -0.041 7.041 19 C -0.144 4.144 20 C -0.022 4.022 21 O -0.229 6.229 22 H 0.072 0.928 23 H 0.014 0.986 24 H 0.009 0.991 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.177 0.823 30 H 0.174 0.826 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.153 0.847 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.178 -20.753 2.328 22.811 hybrid contribution -0.096 1.278 0.436 1.354 sum 9.081 -19.475 2.764 21.666 Atomic orbital electron populations 1.70088 1.07709 1.27767 1.51712 1.25946 0.95758 1.03192 0.94764 0.85552 0.78354 0.78318 0.79147 1.19088 1.20665 1.19420 1.21672 0.93407 0.92581 1.50516 0.92580 1.18993 0.94342 0.92818 0.94897 1.21357 0.97877 0.92897 1.00278 1.20566 0.96053 0.91251 1.03104 1.19873 1.00222 0.98439 0.91918 1.21014 0.96168 0.94175 0.97766 1.20597 0.98417 0.99038 0.96830 1.19573 0.90939 0.90063 0.94189 1.20752 1.01136 0.98704 0.97512 1.20127 0.99217 0.95999 0.87382 1.98367 1.91363 1.81989 1.32347 1.21905 1.00287 0.95599 0.96653 1.24148 1.05207 0.96105 0.76719 1.86823 1.54340 1.50144 1.31629 0.92777 0.98564 0.99144 0.93766 0.93119 0.90161 0.91611 0.82312 0.82588 0.88358 0.87738 0.84659 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 2 C 0.00 0.06 5.46 84.65 0.46 0.53 16 3 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.54 -31.82 9.11 25.60 0.23 -31.59 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.09 -3.70 5.13 30.59 0.16 -3.54 16 11 C -0.07 -2.53 4.87 29.85 0.15 -2.39 16 12 C -0.10 -3.13 5.14 -19.80 -0.10 -3.23 16 13 C -0.07 -1.84 9.66 22.20 0.21 -1.62 16 14 C -0.13 -2.97 10.06 22.45 0.23 -2.74 16 15 C 0.10 2.39 7.04 22.67 0.16 2.54 16 16 C -0.18 -4.52 6.13 -19.50 -0.12 -4.64 16 17 C 0.00 -0.02 6.30 22.23 0.14 0.12 16 18 Cl -0.07 -2.12 27.06 -2.72 -0.07 -2.20 16 19 C -0.11 -1.88 6.93 30.73 0.21 -1.67 16 20 C 0.05 0.72 8.02 72.57 0.58 1.30 16 21 O -0.31 -6.78 11.10 -95.12 -1.06 -7.84 16 22 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 23 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 24 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 25 H 0.04 1.92 7.92 -2.39 -0.02 1.91 16 26 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.08 2.62 8.05 -2.38 -0.02 2.60 16 28 H 0.07 2.39 7.14 -2.39 -0.02 2.37 16 29 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 30 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -68.22 303.41 4.73 -63.49 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: 1.09 Total: 2.12 kcal Atomic # 6 Polarization: -47.81 SS G_CDS: 2.46 Total: -45.35 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.28 Total: -57.33 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -1.06 Total: -7.84 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -0.07 Total: -2.20 kcal Total: -68.22 4.73 -63.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259570518.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.302 kcal (2) G-P(sol) polarization free energy of solvation -68.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds