Wall clock time and date at job start Mon Mar 30 2020 06:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99935 * 2 1 4 4 H 1.48498 * 109.46843 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47027 * 299.99720 * 3 2 1 6 6 H 1.48496 * 109.47403 * 60.00112 * 3 2 1 7 7 C 1.37877 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99847 * 166.30572 * 7 2 1 9 9 C 1.50693 * 119.99959 * 346.29637 * 7 2 1 10 10 H 1.09003 * 109.69811 * 53.45027 * 9 7 2 11 11 C 1.53189 * 109.58641 * 173.80043 * 9 7 2 12 12 C 1.53042 * 109.34209 * 174.43982 * 11 9 7 13 13 C 1.53038 * 109.53696 * 298.62066 * 12 11 9 14 14 C 1.53192 * 109.31436 * 61.36344 * 13 12 11 15 15 N 1.46920 * 108.77459 * 305.36558 * 14 13 12 16 16 C 1.34778 * 120.63213 * 233.63033 * 15 14 13 17 17 O 1.21683 * 120.00527 * 163.87489 * 16 15 14 18 18 C 1.46689 * 119.99790 * 343.87165 * 16 15 14 19 19 C 1.35659 * 126.13054 * 170.04744 * 18 16 15 20 20 N 1.30937 * 114.19198 * 180.02562 * 19 18 16 21 21 C 1.29436 * 117.36341 * 0.02562 * 20 19 18 22 22 S 1.70953 * 110.38781 * 359.71929 * 21 20 19 23 23 H 0.97002 * 119.99935 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.49984 * 54.47343 * 11 9 7 25 25 H 1.09002 * 109.50232 * 294.41042 * 11 9 7 26 26 H 1.09006 * 109.45842 * 58.64307 * 12 11 9 27 27 H 1.08996 * 109.46032 * 178.60930 * 12 11 9 28 28 H 1.09001 * 109.49489 * 181.31484 * 13 12 11 29 29 H 1.08995 * 109.49800 * 301.40705 * 13 12 11 30 30 H 1.09002 * 109.58589 * 65.14833 * 14 13 12 31 31 H 1.08991 * 109.58636 * 185.42991 * 14 13 12 32 32 H 1.07998 * 122.90369 * 0.04220 * 19 18 16 33 33 H 1.08001 * 124.80374 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0615 -1.2073 -0.2220 9 6 1.2832 -2.4807 0.3081 10 1 0.4164 -2.5817 -0.3452 11 6 2.2302 -3.6651 0.0915 12 6 1.5386 -4.9553 0.5379 13 6 1.2076 -4.8688 2.0295 14 6 0.2486 -3.6984 2.2687 15 7 0.8449 -2.4769 1.7112 16 6 0.9880 -1.3736 2.4719 17 8 1.7317 -0.4797 2.1136 18 6 0.2470 -1.2503 3.7319 19 6 0.4334 -0.2977 4.6795 20 7 -0.3593 -0.4092 5.7157 21 6 -1.2049 -1.3892 5.7151 22 16 -1.0487 -2.3097 4.2830 23 1 -0.4850 0.8401 0.0004 24 1 3.1376 -3.5173 0.6773 25 1 2.4873 -3.7370 -0.9653 26 1 0.6187 -5.0897 -0.0311 27 1 2.2016 -5.8023 0.3617 28 1 0.7362 -5.7972 2.3519 29 1 2.1245 -4.7097 2.5970 30 1 -0.7026 -3.8987 1.7753 31 1 0.0856 -3.5725 3.3390 32 1 1.1715 0.4853 4.5871 33 1 -1.9125 -1.5933 6.5050 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259871888.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:07 Heat of formation + Delta-G solvation = 38.975922 kcal Electronic energy + Delta-G solvation = -18950.333356 eV Core-core repulsion = 16104.125144 eV Total energy + Delta-G solvation = -2846.208213 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.50989 -38.68647 -36.17508 -32.93563 -32.02396 -30.31472 -29.60418 -26.13171 -25.09810 -23.74598 -22.20874 -20.99983 -19.54025 -18.85846 -17.66512 -16.26831 -15.64496 -15.30447 -14.60914 -14.43826 -14.26163 -13.77669 -13.61645 -13.53140 -12.94850 -12.79778 -12.43245 -12.07101 -11.95073 -11.31172 -11.04002 -10.80413 -10.67022 -10.31677 -10.26843 -10.08253 -9.81658 -9.35536 -9.10752 -9.07313 -8.76002 -8.54257 -7.68698 -7.16279 -6.00174 -3.83347 0.80566 1.67329 2.05672 3.05566 3.45211 3.57244 3.59905 4.12707 4.27186 4.64406 4.65599 5.20346 5.34162 5.43804 5.51484 5.55484 5.69533 5.84861 5.91446 5.93753 5.99718 6.23155 6.43338 6.45314 6.52348 6.69535 6.77594 6.85403 7.49086 7.90459 7.93799 8.01848 8.12389 8.82415 8.96788 9.53652 9.68960 11.07649 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016295 B = 0.011329 C = 0.007336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.880762 B = 2470.885672 C = 3815.890005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.115 3.885 3 Si 0.910 3.090 4 H -0.276 1.276 5 H -0.300 1.300 6 H -0.284 1.284 7 C -0.494 4.494 8 H 0.060 0.940 9 C 0.266 3.734 10 H 0.049 0.951 11 C -0.123 4.123 12 C -0.119 4.119 13 C -0.125 4.125 14 C 0.098 3.902 15 N -0.596 5.596 16 C 0.587 3.413 17 O -0.469 6.469 18 C -0.245 4.245 19 C 0.072 3.928 20 N -0.477 5.477 21 C -0.026 4.026 22 S 0.160 5.840 23 H 0.259 0.741 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.180 0.820 33 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.789 -9.275 6.918 11.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.090 4.090 3 Si 0.740 3.260 4 H -0.201 1.201 5 H -0.228 1.228 6 H -0.210 1.210 7 C -0.532 4.532 8 H 0.078 0.922 9 C 0.169 3.831 10 H 0.066 0.934 11 C -0.162 4.162 12 C -0.156 4.156 13 C -0.163 4.163 14 C -0.028 4.028 15 N -0.330 5.330 16 C 0.371 3.629 17 O -0.343 6.343 18 C -0.370 4.370 19 C -0.082 4.082 20 N -0.190 5.190 21 C -0.320 4.320 22 S 0.414 5.586 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.197 0.803 33 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -3.073 -9.206 6.838 11.872 hybrid contribution 0.652 1.582 0.331 1.743 sum -2.421 -7.624 7.169 10.742 Atomic orbital electron populations 1.69999 1.06327 1.26823 1.49619 1.24777 0.94472 0.99348 0.90419 0.86322 0.80237 0.83292 0.76184 1.20128 1.22769 1.21008 1.20905 0.95478 0.90419 1.46371 0.92221 1.19001 0.93507 0.93388 0.77225 0.93378 1.21971 0.99431 0.94457 1.00297 1.21555 1.00382 0.98403 0.95283 1.21822 0.99663 0.97165 0.97667 1.21831 0.96451 0.87158 0.97365 1.48690 1.62094 1.09428 1.12786 1.16708 0.81874 0.83323 0.80958 1.90753 1.36516 1.41538 1.65523 1.27335 1.03062 1.02017 1.04568 1.22050 0.99270 0.98985 0.87940 1.66227 1.05989 1.20370 1.26433 1.28843 1.02397 0.96358 1.04429 1.84159 1.30990 1.29281 1.14160 0.93152 0.92725 0.92073 0.92363 0.93024 0.91881 0.91961 0.92183 0.91478 0.80344 0.79249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.72 12.65 55.43 0.70 -25.02 16 2 C 0.11 3.24 3.04 -17.82 -0.05 3.19 16 3 Si 0.91 23.66 28.11 -169.99 -4.78 18.88 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.28 -7.57 7.11 56.52 0.40 -7.17 16 7 C -0.49 -13.51 6.78 -34.44 -0.23 -13.74 16 8 H 0.06 1.66 7.79 -52.49 -0.41 1.25 16 9 C 0.27 6.32 2.69 -68.72 -0.19 6.14 16 10 H 0.05 1.25 8.03 -51.93 -0.42 0.83 16 11 C -0.12 -2.39 5.31 -26.61 -0.14 -2.53 16 12 C -0.12 -1.83 5.88 -26.69 -0.16 -1.99 16 13 C -0.12 -1.83 6.08 -26.61 -0.16 -1.99 16 14 C 0.10 1.67 5.30 -3.71 -0.02 1.65 16 15 N -0.60 -13.14 2.97 -168.02 -0.50 -13.64 16 16 C 0.59 14.02 6.66 -12.85 -0.09 13.93 16 17 O -0.47 -12.78 10.54 5.20 0.05 -12.73 16 18 C -0.25 -4.97 6.13 -37.09 -0.23 -5.20 16 19 C 0.07 1.41 11.11 -18.86 -0.21 1.20 16 20 N -0.48 -8.46 10.51 -15.38 -0.16 -8.62 16 21 C -0.03 -0.37 12.22 51.75 0.63 0.26 16 22 S 0.16 2.44 18.86 -107.50 -2.03 0.41 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 24 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.06 3.84 -22.36 -0.09 0.98 16 32 H 0.18 3.48 8.06 -52.49 -0.42 3.06 16 33 H 0.19 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 277.26 15.07 4.18 4.18 Total: -1.00 -31.34 277.26 -7.23 -38.57 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -3.85 Total: -2.95 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -0.84 Total: 0.91 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.04 Total: -47.28 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.05 Total: -12.73 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -4.78 Total: 18.88 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.03 Total: 0.41 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.34 -7.23 -38.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259871888.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.543 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds