Wall clock time and date at job start Mon Mar 30 2020 06:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99935 * 2 1 4 4 H 1.48498 * 109.46843 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47027 * 299.99720 * 3 2 1 6 6 H 1.48496 * 109.47403 * 60.00112 * 3 2 1 7 7 C 1.37877 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99847 * 166.30572 * 7 2 1 9 9 C 1.50693 * 119.99959 * 346.29637 * 7 2 1 10 10 H 1.09003 * 109.69811 * 53.45027 * 9 7 2 11 11 C 1.53189 * 109.58641 * 173.80043 * 9 7 2 12 12 C 1.53042 * 109.34209 * 174.43982 * 11 9 7 13 13 C 1.53038 * 109.53696 * 298.62066 * 12 11 9 14 14 C 1.53192 * 109.31436 * 61.36344 * 13 12 11 15 15 N 1.46920 * 108.77459 * 305.36558 * 14 13 12 16 16 C 1.34778 * 120.63213 * 233.63033 * 15 14 13 17 17 O 1.21683 * 120.00527 * 163.87489 * 16 15 14 18 18 C 1.46689 * 119.99790 * 343.87165 * 16 15 14 19 19 C 1.35659 * 126.13054 * 170.04744 * 18 16 15 20 20 N 1.30937 * 114.19198 * 180.02562 * 19 18 16 21 21 C 1.29436 * 117.36341 * 0.02562 * 20 19 18 22 22 S 1.70953 * 110.38781 * 359.71929 * 21 20 19 23 23 H 0.97002 * 119.99935 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.49984 * 54.47343 * 11 9 7 25 25 H 1.09002 * 109.50232 * 294.41042 * 11 9 7 26 26 H 1.09006 * 109.45842 * 58.64307 * 12 11 9 27 27 H 1.08996 * 109.46032 * 178.60930 * 12 11 9 28 28 H 1.09001 * 109.49489 * 181.31484 * 13 12 11 29 29 H 1.08995 * 109.49800 * 301.40705 * 13 12 11 30 30 H 1.09002 * 109.58589 * 65.14833 * 14 13 12 31 31 H 1.08991 * 109.58636 * 185.42991 * 14 13 12 32 32 H 1.07998 * 122.90369 * 0.04220 * 19 18 16 33 33 H 1.08001 * 124.80374 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0615 -1.2073 -0.2220 9 6 1.2832 -2.4807 0.3081 10 1 0.4164 -2.5817 -0.3452 11 6 2.2302 -3.6651 0.0915 12 6 1.5386 -4.9553 0.5379 13 6 1.2076 -4.8688 2.0295 14 6 0.2486 -3.6984 2.2687 15 7 0.8449 -2.4769 1.7112 16 6 0.9880 -1.3736 2.4719 17 8 1.7317 -0.4797 2.1136 18 6 0.2470 -1.2503 3.7319 19 6 0.4334 -0.2977 4.6795 20 7 -0.3593 -0.4092 5.7157 21 6 -1.2049 -1.3892 5.7151 22 16 -1.0487 -2.3097 4.2830 23 1 -0.4850 0.8401 0.0004 24 1 3.1376 -3.5173 0.6773 25 1 2.4873 -3.7370 -0.9653 26 1 0.6187 -5.0897 -0.0311 27 1 2.2016 -5.8023 0.3617 28 1 0.7362 -5.7972 2.3519 29 1 2.1245 -4.7097 2.5970 30 1 -0.7026 -3.8987 1.7753 31 1 0.0856 -3.5725 3.3390 32 1 1.1715 0.4853 4.5871 33 1 -1.9125 -1.5933 6.5050 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259871888.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:05 Heat of formation + Delta-G solvation = 17.149582 kcal Electronic energy + Delta-G solvation = -18951.279818 eV Core-core repulsion = 16104.125144 eV Total energy + Delta-G solvation = -2847.154674 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -41.08172 -40.19160 -37.79376 -34.88111 -33.62176 -32.02148 -31.06120 -27.76534 -26.70500 -25.31709 -23.79280 -22.53482 -21.03030 -20.27683 -19.25778 -18.18746 -17.20880 -16.87802 -16.43927 -16.15114 -15.79859 -15.22720 -15.02335 -14.86923 -14.60872 -14.36723 -14.01479 -13.83865 -13.71261 -12.82170 -12.72929 -12.53309 -12.41513 -12.21039 -11.80582 -11.60255 -11.47390 -11.08167 -10.93784 -10.57599 -10.23462 -9.86711 -9.66450 -8.92282 -8.14922 -5.96873 -0.57290 0.32771 0.72672 1.31040 1.43255 1.47432 1.64715 2.42497 2.48707 2.66242 3.38611 3.49667 3.90474 4.01194 4.16502 4.25145 4.29283 4.43135 4.51002 4.58068 4.64909 4.96133 5.06751 5.09121 5.19643 5.23927 5.29467 5.38447 5.64244 5.84443 6.08423 6.26851 6.64648 6.80998 7.10647 7.56941 7.80392 8.92802 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016295 B = 0.011329 C = 0.007336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.880762 B = 2470.885672 C = 3815.890005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.088 3.912 3 Si 0.944 3.056 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.298 1.298 7 C -0.511 4.511 8 H 0.042 0.958 9 C 0.268 3.732 10 H 0.022 0.978 11 C -0.117 4.117 12 C -0.112 4.112 13 C -0.120 4.120 14 C 0.090 3.910 15 N -0.601 5.601 16 C 0.578 3.422 17 O -0.523 6.523 18 C -0.301 4.301 19 C 0.077 3.923 20 N -0.502 5.502 21 C 0.000 4.000 22 S 0.236 5.764 23 H 0.253 0.747 24 H 0.040 0.960 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.163 0.837 33 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.423 -12.023 8.827 15.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.114 4.114 3 Si 0.773 3.227 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.225 1.225 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.169 3.831 10 H 0.040 0.960 11 C -0.156 4.156 12 C -0.150 4.150 13 C -0.158 4.158 14 C -0.034 4.034 15 N -0.334 5.334 16 C 0.364 3.636 17 O -0.401 6.401 18 C -0.426 4.426 19 C -0.079 4.079 20 N -0.216 5.216 21 C -0.293 4.293 22 S 0.491 5.509 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.126 0.874 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.180 0.820 33 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -4.715 -12.003 8.734 15.576 hybrid contribution 1.073 2.342 -0.092 2.577 sum -3.642 -9.662 8.643 13.465 Atomic orbital electron populations 1.70049 1.06900 1.26494 1.51955 1.25116 0.94816 1.00898 0.90536 0.85797 0.79435 0.81761 0.75670 1.20424 1.21729 1.22521 1.21064 0.94753 0.92305 1.46705 0.94018 1.18764 0.92967 0.93600 0.77810 0.96045 1.21856 0.98185 0.95126 1.00408 1.21524 1.00839 0.96711 0.95909 1.21846 0.99147 0.97821 0.96960 1.22169 0.97393 0.85767 0.98107 1.48451 1.61940 1.10830 1.12210 1.17072 0.81690 0.82978 0.81863 1.90691 1.38602 1.42573 1.68233 1.26735 1.06730 1.05342 1.03747 1.21983 0.99091 0.98410 0.88399 1.66307 1.07161 1.22185 1.25948 1.29749 1.00759 0.94107 1.04720 1.83673 1.27503 1.26681 1.13044 0.93784 0.94082 0.91977 0.91656 0.89993 0.87390 0.92533 0.91109 0.90037 0.81983 0.74151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.81 12.65 21.45 0.27 -54.54 16 2 C 0.09 5.17 3.04 84.65 0.26 5.43 16 3 Si 0.94 50.59 28.11 68.60 1.93 52.52 16 4 H -0.28 -14.85 7.11 99.48 0.71 -14.14 16 5 H -0.29 -14.83 7.11 99.48 0.71 -14.13 16 6 H -0.30 -16.50 7.11 99.48 0.71 -15.80 16 7 C -0.51 -29.19 6.78 25.60 0.17 -29.02 16 8 H 0.04 2.45 7.79 -2.91 -0.02 2.42 16 9 C 0.27 12.99 2.69 44.21 0.12 13.11 16 10 H 0.02 1.16 8.03 -2.39 -0.02 1.14 16 11 C -0.12 -4.51 5.31 30.67 0.16 -4.35 16 12 C -0.11 -3.13 5.88 30.62 0.18 -2.95 16 13 C -0.12 -3.06 6.08 30.67 0.19 -2.87 16 14 C 0.09 2.83 5.30 86.36 0.46 3.29 16 15 N -0.60 -26.55 2.97 -803.72 -2.39 -28.94 16 16 C 0.58 28.22 6.66 86.45 0.58 28.80 16 17 O -0.52 -29.90 10.54 -4.29 -0.05 -29.94 16 18 C -0.30 -12.07 6.13 23.88 0.15 -11.93 16 19 C 0.08 3.03 11.11 84.23 0.94 3.96 16 20 N -0.50 -16.70 10.51 -202.57 -2.13 -18.83 16 21 C 0.00 0.01 12.22 130.60 1.60 1.60 16 22 S 0.24 6.34 18.86 -56.49 -1.07 5.27 16 23 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 24 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 27 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.08 2.31 3.84 -21.20 -0.08 2.22 16 32 H 0.16 6.67 8.06 -2.91 -0.02 6.65 16 33 H 0.24 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -72.99 277.26 2.41 -70.59 By element: Atomic # 1 Polarization: -2.25 SS G_CDS: 1.04 Total: -1.21 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 4.79 Total: 5.07 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -4.25 Total: -102.30 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.05 Total: -29.94 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 1.93 Total: 52.52 kcal Atomic # 16 Polarization: 6.34 SS G_CDS: -1.07 Total: 5.27 kcal Total: -72.99 2.41 -70.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259871888.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.735 kcal (2) G-P(sol) polarization free energy of solvation -72.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds