Wall clock time and date at job start Mon Mar 30 2020 06:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99471 * 2 1 4 4 H 1.48500 * 109.46981 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47111 * 299.99438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 59.99800 * 3 2 1 7 7 C 1.37870 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99702 * 174.57705 * 7 2 1 9 9 C 1.50695 * 120.00057 * 354.57279 * 7 2 1 10 10 H 1.09000 * 109.58868 * 335.06854 * 9 7 2 11 11 C 1.53167 * 109.70664 * 214.70946 * 9 7 2 12 12 C 1.53038 * 109.32999 * 185.49849 * 11 9 7 13 13 C 1.53045 * 109.52709 * 61.37197 * 12 11 9 14 14 C 1.53195 * 109.31199 * 298.64812 * 13 12 11 15 15 N 1.46922 * 108.77748 * 54.63038 * 14 13 12 16 16 C 1.34775 * 120.63290 * 126.41831 * 15 14 13 17 17 O 1.21685 * 120.00173 * 176.66604 * 16 15 14 18 18 C 1.46686 * 119.99765 * 356.66800 * 16 15 14 19 19 C 1.35665 * 126.13114 * 225.65741 * 18 16 15 20 20 N 1.30939 * 114.19098 * 179.82697 * 19 18 16 21 21 C 1.29428 * 117.36150 * 0.47864 * 20 19 18 22 22 S 1.70949 * 110.39565 * 359.73737 * 21 20 19 23 23 H 0.96998 * 120.00865 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47903 * 65.55013 * 11 9 7 25 25 H 1.08992 * 109.50431 * 305.46307 * 11 9 7 26 26 H 1.08998 * 109.46304 * 301.36408 * 12 11 9 27 27 H 1.08998 * 109.46403 * 181.38326 * 12 11 9 28 28 H 1.09004 * 109.49609 * 58.59064 * 13 12 11 29 29 H 1.08989 * 109.50250 * 178.65931 * 13 12 11 30 30 H 1.08996 * 109.59050 * 174.42326 * 14 13 12 31 31 H 1.09005 * 109.58618 * 294.70136 * 14 13 12 32 32 H 1.08004 * 122.90187 * 0.02562 * 19 18 16 33 33 H 1.08006 * 124.79941 * 179.69987 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0810 -1.1960 -0.0879 9 6 1.2562 -2.4961 0.1245 10 1 0.3055 -2.3246 0.6294 11 6 2.0913 -3.4971 0.9286 12 6 1.3873 -4.8560 0.9330 13 6 1.2641 -5.3729 -0.5023 14 6 0.4196 -4.3930 -1.3229 15 7 1.0104 -3.0523 -1.2130 16 6 1.3206 -2.3458 -2.3180 17 8 1.7529 -1.2130 -2.2145 18 6 1.1371 -2.9424 -3.6454 19 6 2.0268 -2.9056 -4.6689 20 7 1.6232 -3.5193 -5.7529 21 6 0.4504 -4.0660 -5.7254 22 16 -0.2818 -3.8287 -4.1990 23 1 -0.4851 0.8400 -0.0004 24 1 2.1995 -3.1402 1.9529 25 1 3.0759 -3.5990 0.4724 26 1 0.3931 -4.7485 1.3667 27 1 1.9674 -5.5637 1.5252 28 1 2.2565 -5.4570 -0.9451 29 1 0.7841 -6.3513 -0.4966 30 1 0.4109 -4.7039 -2.3675 31 1 -0.6001 -4.3779 -0.9378 32 1 2.9863 -2.4155 -4.5948 33 1 -0.0019 -4.5965 -6.5503 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259871890.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:09 Heat of formation + Delta-G solvation = 5.002742 kcal Electronic energy + Delta-G solvation = -18696.245104 eV Core-core repulsion = 15848.563703 eV Total energy + Delta-G solvation = -2847.681400 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.10000 -40.13363 -37.82160 -34.89213 -33.62105 -32.00770 -31.09795 -27.71059 -26.76965 -25.33349 -23.71306 -22.49495 -21.08842 -20.21489 -19.27762 -18.34605 -17.24459 -16.94306 -16.35814 -15.99859 -15.72445 -15.23460 -14.94917 -14.88152 -14.68951 -14.34756 -14.02586 -13.77813 -13.58442 -12.90150 -12.70846 -12.54386 -12.48040 -12.17532 -11.62819 -11.53857 -11.48631 -11.27609 -10.88529 -10.70911 -10.30270 -9.89828 -9.88000 -9.02448 -8.09629 -5.91705 -0.52103 0.23355 0.68642 1.32822 1.39469 1.46834 1.67232 2.31455 2.50386 2.54343 3.36214 3.45472 3.87917 3.99878 4.14966 4.26618 4.29342 4.44369 4.50779 4.61073 4.67547 4.97355 5.07037 5.07407 5.18497 5.25301 5.29169 5.38459 5.64078 5.85211 6.05891 6.25172 6.61631 6.82691 7.06649 7.57253 7.77187 9.00923 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.009036 C = 0.006784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.452335 B = 3097.841467 C = 4126.084361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.046 3.954 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.298 1.298 6 H -0.275 1.275 7 C -0.474 4.474 8 H 0.035 0.965 9 C 0.256 3.744 10 H 0.032 0.968 11 C -0.116 4.116 12 C -0.114 4.114 13 C -0.121 4.121 14 C 0.085 3.915 15 N -0.596 5.596 16 C 0.570 3.430 17 O -0.524 6.524 18 C -0.295 4.295 19 C 0.078 3.922 20 N -0.496 5.496 21 C 0.022 3.978 22 S 0.210 5.790 23 H 0.254 0.746 24 H 0.061 0.939 25 H 0.041 0.959 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.171 0.829 33 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.518 -14.601 -6.134 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.154 4.154 3 Si 0.768 3.232 4 H -0.199 1.199 5 H -0.225 1.225 6 H -0.201 1.201 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.157 3.843 10 H 0.049 0.951 11 C -0.155 4.155 12 C -0.151 4.151 13 C -0.159 4.159 14 C -0.039 4.039 15 N -0.330 5.330 16 C 0.353 3.647 17 O -0.400 6.400 18 C -0.420 4.420 19 C -0.077 4.077 20 N -0.209 5.209 21 C -0.272 4.272 22 S 0.464 5.536 23 H 0.063 0.937 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.122 0.878 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.189 0.811 33 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -3.095 -14.240 -6.137 15.812 hybrid contribution 1.276 1.904 -0.086 2.294 sum -1.818 -12.336 -6.223 13.936 Atomic orbital electron populations 1.69992 1.06955 1.26463 1.52519 1.25247 0.95111 1.01316 0.93738 0.85792 0.79304 0.81396 0.76677 1.19920 1.22535 1.20083 1.20928 0.92246 0.91253 1.46779 0.94667 1.19010 0.95118 0.90784 0.79386 0.95053 1.21867 0.98407 0.95642 0.99547 1.21540 1.00817 0.95798 0.96969 1.21839 1.00082 0.98766 0.95216 1.22191 0.97343 0.82848 1.01480 1.48800 1.60832 1.16446 1.06882 1.17362 0.79435 0.85223 0.82662 1.90941 1.45203 1.18476 1.85417 1.26468 1.01891 1.11692 1.01966 1.22029 1.01066 0.98320 0.86288 1.66263 1.15510 1.12170 1.26984 1.29528 0.93362 1.01547 1.02809 1.83804 1.17282 1.45350 1.07159 0.93675 0.92056 0.94020 0.91981 0.90117 0.92548 0.87783 0.89671 0.91516 0.81149 0.73689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.00 12.85 21.44 0.28 -55.72 16 2 C 0.05 2.70 4.06 84.65 0.34 3.04 16 3 Si 0.94 48.87 29.54 68.60 2.03 50.89 16 4 H -0.27 -14.05 7.11 99.48 0.71 -13.34 16 5 H -0.30 -15.96 7.11 99.48 0.71 -15.26 16 6 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 7 C -0.47 -27.21 5.59 25.60 0.14 -27.07 16 8 H 0.04 2.11 7.82 -2.91 -0.02 2.08 16 9 C 0.26 12.63 2.94 44.22 0.13 12.76 16 10 H 0.03 1.73 7.39 -2.39 -0.02 1.72 16 11 C -0.12 -4.57 5.36 30.66 0.16 -4.40 16 12 C -0.11 -3.30 5.89 30.62 0.18 -3.12 16 13 C -0.12 -3.18 6.08 30.67 0.19 -3.00 16 14 C 0.08 2.71 5.92 86.36 0.51 3.23 16 15 N -0.60 -26.30 2.97 -803.92 -2.39 -28.69 16 16 C 0.57 27.25 7.46 86.45 0.65 27.89 16 17 O -0.52 -30.37 12.97 -4.30 -0.06 -30.42 16 18 C -0.30 -11.06 5.46 23.88 0.13 -10.93 16 19 C 0.08 2.74 11.31 84.23 0.95 3.69 16 20 N -0.50 -14.68 10.51 -202.56 -2.13 -16.81 16 21 C 0.02 0.48 12.22 130.60 1.60 2.08 16 22 S 0.21 5.39 20.18 -56.49 -1.14 4.25 16 23 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 24 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.09 2.40 4.09 -14.82 -0.06 2.34 16 31 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.17 6.02 8.06 -2.91 -0.02 5.99 16 33 H 0.25 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -74.09 283.34 2.64 -71.46 By element: Atomic # 1 Polarization: -0.20 SS G_CDS: 1.07 Total: 0.87 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 4.98 Total: 4.17 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -4.24 Total: -101.22 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.06 Total: -30.42 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 2.03 Total: 50.89 kcal Atomic # 16 Polarization: 5.39 SS G_CDS: -1.14 Total: 4.25 kcal Total: -74.09 2.64 -71.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259871890.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.460 kcal (2) G-P(sol) polarization free energy of solvation -74.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds