Wall clock time and date at job start Mon Mar 30 2020 08:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 120.00084 * 2 1 4 4 H 1.48502 * 109.46906 * 269.99463 * 3 2 1 5 5 H 1.48495 * 109.47443 * 29.99717 * 3 2 1 6 6 H 1.48500 * 109.47036 * 149.99959 * 3 2 1 7 7 C 1.37881 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99593 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00415 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.44852 * 59.97392 * 9 7 2 11 11 C 1.53030 * 109.46589 * 179.97438 * 9 7 2 12 12 C 1.53123 * 109.28009 * 60.83487 * 11 9 7 13 13 H 1.08993 * 109.52379 * 297.75279 * 12 11 9 14 14 C 1.50693 * 109.52248 * 177.55723 * 12 11 9 15 15 C 1.38170 * 119.61671 * 275.04842 * 14 12 11 16 16 C 1.38770 * 119.14571 * 179.73674 * 15 14 12 17 17 Cl 1.73601 * 120.80756 * 180.23828 * 16 15 14 18 18 C 1.38829 * 118.39545 * 0.52834 * 16 15 14 19 19 C 1.38122 * 119.14135 * 359.72946 * 18 16 15 20 20 N 1.31888 * 119.61030 * 95.32272 * 14 12 11 21 21 C 1.53118 * 109.15585 * 57.65675 * 12 11 9 22 22 C 1.53036 * 109.28007 * 302.34276 * 21 12 11 23 23 N 1.46846 * 109.52162 * 59.18140 * 22 21 12 24 24 H 0.96998 * 120.00102 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.50272 * 300.89774 * 11 9 7 26 26 H 1.09003 * 109.50540 * 180.77958 * 11 9 7 27 27 H 1.07999 * 120.42270 * 359.97438 * 15 14 12 28 28 H 1.07992 * 120.42842 * 179.75964 * 18 16 15 29 29 H 1.08000 * 119.60928 * 180.02562 * 19 18 16 30 30 H 1.09008 * 109.50062 * 182.40805 * 21 12 11 31 31 H 1.09000 * 109.50693 * 62.28496 * 21 12 11 32 32 H 1.08998 * 109.46728 * 299.16963 * 22 21 12 33 33 H 1.09003 * 109.45634 * 179.19307 * 22 21 12 34 34 H 1.00904 * 111.00089 * 62.35801 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8741 -0.6797 0.8910 11 6 4.0214 -2.6370 0.0023 12 6 3.5262 -3.3493 -1.2595 13 1 2.4368 -3.3829 -1.2551 14 6 4.0746 -4.7524 -1.2938 15 6 5.3337 -4.9809 -1.8150 16 6 5.8313 -6.2762 -1.8367 17 17 7.4102 -6.6114 -2.4759 18 6 5.0336 -7.2983 -1.3405 19 6 3.7828 -6.9929 -0.8404 20 7 3.3449 -5.7488 -0.8310 21 6 4.0094 -2.5808 -2.4926 22 6 3.4998 -1.1395 -2.4215 23 7 4.0012 -0.5016 -1.1976 24 1 -0.4850 0.8400 -0.0004 25 1 3.6448 -3.1553 0.8842 26 1 5.1113 -2.6379 0.0167 27 1 5.9244 -4.1615 -2.1969 28 1 5.3866 -8.3189 -1.3451 29 1 3.1561 -7.7822 -0.4521 30 1 3.6242 -3.0589 -3.3934 31 1 5.0991 -2.5807 -2.5175 32 1 2.4099 -1.1397 -2.4106 33 1 3.8542 -0.5858 -3.2910 34 1 5.0091 -0.4541 -1.2014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259899707.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:07 Heat of formation + Delta-G solvation = 22.954922 kcal Electronic energy + Delta-G solvation = -18087.681245 eV Core-core repulsion = 15238.734603 eV Total energy + Delta-G solvation = -2848.946642 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.47428 -38.11028 -36.85582 -33.28340 -32.25247 -31.98366 -30.21401 -29.40134 -25.45681 -24.09549 -23.67787 -21.84434 -21.01336 -19.01293 -17.21447 -16.57742 -16.44667 -15.65637 -14.99100 -14.50037 -14.18435 -13.91026 -13.78322 -13.60254 -13.03622 -12.64095 -12.52710 -12.21778 -12.03759 -11.61064 -11.55716 -11.11079 -10.82438 -10.63688 -10.36824 -9.95554 -9.80608 -9.64621 -9.52649 -9.42126 -9.08217 -8.84658 -8.45688 -7.34212 -5.96023 -4.03476 1.00082 1.01880 1.78159 3.59338 3.63155 3.68654 3.75978 4.26886 4.62081 4.68618 4.77715 5.00305 5.13835 5.32880 5.36802 5.46046 5.54840 5.68906 5.76446 5.83061 5.89326 6.05367 6.13352 6.29719 6.35798 6.54960 6.67029 6.75417 6.78126 6.99176 7.23745 7.67467 8.01514 8.02444 8.39986 8.68571 9.04653 9.68284 11.13330 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.034988 B = 0.005150 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.087727 B = 5435.361505 C = 5903.001155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.080 3.920 3 Si 0.930 3.070 4 H -0.281 1.281 5 H -0.320 1.320 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.074 0.926 9 C 0.177 3.823 10 H 0.046 0.954 11 C -0.117 4.117 12 C -0.034 4.034 13 H 0.109 0.891 14 C 0.169 3.831 15 C -0.167 4.167 16 C 0.009 3.991 17 Cl -0.063 7.063 18 C -0.184 4.184 19 C 0.116 3.884 20 N -0.475 5.475 21 C -0.141 4.141 22 C 0.069 3.931 23 N -0.684 5.684 24 H 0.262 0.738 25 H 0.062 0.938 26 H 0.037 0.963 27 H 0.145 0.855 28 H 0.141 0.859 29 H 0.163 0.837 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.612 -12.165 -4.912 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.124 4.124 3 Si 0.763 3.237 4 H -0.207 1.207 5 H -0.249 1.249 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.092 0.908 9 C 0.070 3.930 10 H 0.064 0.936 11 C -0.157 4.157 12 C -0.053 4.053 13 H 0.127 0.873 14 C 0.031 3.969 15 C -0.187 4.187 16 C -0.025 4.025 17 Cl -0.034 7.034 18 C -0.205 4.205 19 C -0.041 4.041 20 N -0.183 5.183 21 C -0.181 4.181 22 C -0.061 4.061 23 N -0.313 5.313 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.163 0.837 28 H 0.158 0.842 29 H 0.180 0.820 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.271 -11.440 -4.618 16.710 hybrid contribution 2.012 -0.415 -0.486 2.111 sum 13.283 -11.855 -5.104 18.521 Atomic orbital electron populations 1.69967 1.06779 1.27172 1.49978 1.25023 0.94524 0.99966 0.92868 0.85957 0.78593 0.81185 0.78004 1.20704 1.24947 1.19887 1.20852 0.87873 0.94415 1.52136 0.90787 1.19726 0.96956 0.87243 0.89093 0.93635 1.22085 0.97578 0.99909 0.96106 1.20208 1.02959 0.85739 0.96376 0.87266 1.21804 0.89108 0.96249 0.89748 1.22028 0.97901 0.95819 1.02987 1.21308 0.87667 0.94997 0.98550 1.98379 1.24597 1.95514 1.84941 1.22024 0.96030 0.99735 1.02727 1.22849 0.92731 0.94052 0.94489 1.67645 1.35952 0.99720 1.15013 1.22324 0.99565 0.99341 0.96856 1.21797 1.02902 0.89574 0.91805 1.60898 1.11958 1.54976 1.03464 0.92888 0.91897 0.94475 0.83740 0.84152 0.82002 0.92363 0.92976 0.88815 0.92816 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 2 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 3 Si 0.93 23.39 26.03 -169.99 -4.42 18.96 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.32 -8.22 7.11 56.52 0.40 -7.82 16 6 H -0.27 -6.65 6.54 56.52 0.37 -6.28 16 7 C -0.51 -13.71 7.05 -34.44 -0.24 -13.96 16 8 H 0.07 2.16 7.01 -52.48 -0.37 1.80 16 9 C 0.18 3.91 2.45 -68.88 -0.17 3.74 16 10 H 0.05 1.06 7.20 -51.93 -0.37 0.68 16 11 C -0.12 -2.22 4.82 -26.65 -0.13 -2.34 16 12 C -0.03 -0.60 2.32 -91.65 -0.21 -0.82 16 13 H 0.11 2.32 6.73 -51.93 -0.35 1.97 16 14 C 0.17 2.71 5.80 -82.60 -0.48 2.23 16 15 C -0.17 -2.30 9.00 -39.41 -0.35 -2.65 16 16 C 0.01 0.12 6.37 -39.17 -0.25 -0.13 16 17 Cl -0.06 -0.68 29.02 -51.86 -1.50 -2.18 16 18 C -0.18 -2.06 9.94 -39.41 -0.39 -2.46 16 19 C 0.12 1.45 11.18 -17.56 -0.20 1.26 16 20 N -0.47 -7.72 10.27 -9.49 -0.10 -7.81 16 21 C -0.14 -2.25 4.85 -26.65 -0.13 -2.38 16 22 C 0.07 1.29 6.31 -3.84 -0.02 1.26 16 23 N -0.68 -13.79 4.20 -107.99 -0.45 -14.24 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.14 1.83 6.25 -52.49 -0.33 1.50 16 28 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 31 H 0.05 0.73 6.37 -51.93 -0.33 0.40 16 32 H 0.09 2.08 6.99 -51.93 -0.36 1.71 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.31 5.40 8.86 -39.29 -0.35 5.05 16 LS Contribution 286.18 15.07 4.31 4.31 Total: -1.00 -29.98 286.18 -8.23 -38.21 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -4.16 Total: 3.34 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -2.67 Total: -14.10 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.22 Total: -48.54 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.42 Total: 18.96 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.98 -8.23 -38.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259899707.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.164 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds