Wall clock time and date at job start Mon Mar 30 2020 08:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 120.00084 * 2 1 4 4 H 1.48502 * 109.46906 * 269.99463 * 3 2 1 5 5 H 1.48495 * 109.47443 * 29.99717 * 3 2 1 6 6 H 1.48500 * 109.47036 * 149.99959 * 3 2 1 7 7 C 1.37881 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99593 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00415 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.44852 * 59.97392 * 9 7 2 11 11 C 1.53030 * 109.46589 * 179.97438 * 9 7 2 12 12 C 1.53123 * 109.28009 * 60.83487 * 11 9 7 13 13 H 1.08993 * 109.52379 * 297.75279 * 12 11 9 14 14 C 1.50693 * 109.52248 * 177.55723 * 12 11 9 15 15 C 1.38170 * 119.61671 * 275.04842 * 14 12 11 16 16 C 1.38770 * 119.14571 * 179.73674 * 15 14 12 17 17 Cl 1.73601 * 120.80756 * 180.23828 * 16 15 14 18 18 C 1.38829 * 118.39545 * 0.52834 * 16 15 14 19 19 C 1.38122 * 119.14135 * 359.72946 * 18 16 15 20 20 N 1.31888 * 119.61030 * 95.32272 * 14 12 11 21 21 C 1.53118 * 109.15585 * 57.65675 * 12 11 9 22 22 C 1.53036 * 109.28007 * 302.34276 * 21 12 11 23 23 N 1.46846 * 109.52162 * 59.18140 * 22 21 12 24 24 H 0.96998 * 120.00102 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.50272 * 300.89774 * 11 9 7 26 26 H 1.09003 * 109.50540 * 180.77958 * 11 9 7 27 27 H 1.07999 * 120.42270 * 359.97438 * 15 14 12 28 28 H 1.07992 * 120.42842 * 179.75964 * 18 16 15 29 29 H 1.08000 * 119.60928 * 180.02562 * 19 18 16 30 30 H 1.09008 * 109.50062 * 182.40805 * 21 12 11 31 31 H 1.09000 * 109.50693 * 62.28496 * 21 12 11 32 32 H 1.08998 * 109.46728 * 299.16963 * 22 21 12 33 33 H 1.09003 * 109.45634 * 179.19307 * 22 21 12 34 34 H 1.00904 * 111.00089 * 62.35801 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8741 -0.6797 0.8910 11 6 4.0214 -2.6370 0.0023 12 6 3.5262 -3.3493 -1.2595 13 1 2.4368 -3.3829 -1.2551 14 6 4.0746 -4.7524 -1.2938 15 6 5.3337 -4.9809 -1.8150 16 6 5.8313 -6.2762 -1.8367 17 17 7.4102 -6.6114 -2.4759 18 6 5.0336 -7.2983 -1.3405 19 6 3.7828 -6.9929 -0.8404 20 7 3.3449 -5.7488 -0.8310 21 6 4.0094 -2.5808 -2.4926 22 6 3.4998 -1.1395 -2.4215 23 7 4.0012 -0.5016 -1.1976 24 1 -0.4850 0.8400 -0.0004 25 1 3.6448 -3.1553 0.8842 26 1 5.1113 -2.6379 0.0167 27 1 5.9244 -4.1615 -2.1969 28 1 5.3866 -8.3189 -1.3451 29 1 3.1561 -7.7822 -0.4521 30 1 3.6242 -3.0589 -3.3934 31 1 5.0991 -2.5807 -2.5175 32 1 2.4099 -1.1397 -2.4106 33 1 3.8542 -0.5858 -3.2910 34 1 5.0091 -0.4541 -1.2014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259899707.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:07 Heat of formation + Delta-G solvation = 2.956687 kcal Electronic energy + Delta-G solvation = -18088.548433 eV Core-core repulsion = 15238.734603 eV Total energy + Delta-G solvation = -2849.813830 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58939 -39.59359 -37.76131 -34.86613 -33.91388 -33.19274 -31.86951 -30.62895 -27.41281 -25.38358 -24.77703 -23.26480 -22.43384 -20.72866 -18.54876 -18.15051 -17.67384 -16.92264 -16.33250 -16.22295 -15.47938 -15.31930 -15.09091 -14.75939 -14.64868 -14.32861 -13.94600 -13.54035 -13.22109 -13.15083 -12.94297 -12.53448 -12.48561 -12.05851 -11.96044 -11.70841 -11.59666 -11.24908 -10.96128 -10.64097 -10.52625 -10.50384 -10.00534 -8.95322 -8.16008 -6.25254 -0.00890 0.03057 0.86226 1.54547 1.61031 1.73989 2.58265 2.64361 3.13242 3.21832 3.63073 3.80537 3.84664 4.00426 4.11326 4.14920 4.25767 4.44954 4.53021 4.61032 4.64662 4.74229 4.82588 4.91875 5.01320 5.12638 5.16563 5.23121 5.44867 5.53301 5.57593 5.72492 6.14265 6.54186 6.78102 6.98540 7.09949 7.49000 8.97231 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.034988 B = 0.005150 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.087727 B = 5435.361505 C = 5903.001155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.023 3.977 3 Si 0.992 3.008 4 H -0.277 1.277 5 H -0.330 1.330 6 H -0.255 1.255 7 C -0.502 4.502 8 H 0.030 0.970 9 C 0.181 3.819 10 H 0.041 0.959 11 C -0.108 4.108 12 C -0.027 4.027 13 H 0.058 0.942 14 C 0.146 3.854 15 C -0.164 4.164 16 C 0.005 3.995 17 Cl -0.044 7.044 18 C -0.168 4.168 19 C 0.109 3.891 20 N -0.517 5.517 21 C -0.129 4.129 22 C 0.070 3.930 23 N -0.691 5.691 24 H 0.260 0.740 25 H 0.040 0.960 26 H 0.069 0.931 27 H 0.158 0.842 28 H 0.175 0.825 29 H 0.190 0.810 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.272 -13.163 -5.899 21.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.175 4.175 3 Si 0.823 3.177 4 H -0.203 1.203 5 H -0.260 1.260 6 H -0.179 1.179 7 C -0.540 4.540 8 H 0.048 0.952 9 C 0.073 3.927 10 H 0.059 0.941 11 C -0.148 4.148 12 C -0.047 4.047 13 H 0.077 0.923 14 C 0.010 3.990 15 C -0.185 4.185 16 C -0.030 4.030 17 Cl -0.015 7.015 18 C -0.188 4.188 19 C -0.048 4.048 20 N -0.227 5.227 21 C -0.168 4.168 22 C -0.059 4.059 23 N -0.322 5.322 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.176 0.824 28 H 0.192 0.808 29 H 0.207 0.793 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.970 -12.453 -5.614 20.265 hybrid contribution 0.889 -0.299 -0.195 0.958 sum 15.858 -12.752 -5.810 21.163 Atomic orbital electron populations 1.70112 1.08638 1.27767 1.52950 1.25831 0.95039 1.03469 0.93113 0.84954 0.77804 0.76890 0.78086 1.20269 1.26027 1.17881 1.21056 0.90667 0.92365 1.49951 0.95212 1.19502 0.93711 0.89617 0.89917 0.94114 1.21926 0.99194 0.97621 0.96049 1.19935 1.00010 0.87981 0.96749 0.92344 1.21406 0.90407 0.95105 0.92130 1.22017 0.96866 0.97065 1.02535 1.21422 0.88570 0.94736 0.98283 1.98391 1.23151 1.95344 1.84607 1.22386 0.94922 1.01135 1.00334 1.23344 0.93858 0.93286 0.94289 1.67545 1.37493 1.01345 1.16300 1.22214 1.01391 0.97002 0.96239 1.21740 1.00199 0.91881 0.92109 1.60574 1.13799 1.54916 1.02939 0.93101 0.94114 0.91277 0.82411 0.80772 0.79300 0.91381 0.89585 0.93498 0.89976 0.84560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 2 C 0.02 1.36 5.47 84.66 0.46 1.83 16 3 Si 0.99 48.80 26.03 68.60 1.79 50.58 16 4 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 5 H -0.33 -16.63 7.11 99.48 0.71 -15.92 16 6 H -0.25 -11.60 6.54 99.48 0.65 -10.95 16 7 C -0.50 -28.01 7.05 25.60 0.18 -27.83 16 8 H 0.03 1.88 7.01 -2.91 -0.02 1.86 16 9 C 0.18 7.95 2.45 44.19 0.11 8.06 16 10 H 0.04 1.85 7.20 -2.39 -0.02 1.83 16 11 C -0.11 -4.07 4.82 30.65 0.15 -3.92 16 12 C -0.03 -0.99 2.32 -11.46 -0.03 -1.01 16 13 H 0.06 2.68 6.73 -2.39 -0.02 2.66 16 14 C 0.15 4.59 5.80 42.53 0.25 4.84 16 15 C -0.16 -4.08 9.00 22.38 0.20 -3.88 16 16 C 0.00 0.10 6.37 22.54 0.14 0.24 16 17 Cl -0.04 -0.78 29.02 -2.72 -0.08 -0.86 16 18 C -0.17 -3.18 9.94 22.38 0.22 -2.95 16 19 C 0.11 2.53 11.18 84.65 0.95 3.47 16 20 N -0.52 -16.76 10.27 -183.95 -1.89 -18.65 16 21 C -0.13 -3.90 4.85 30.65 0.15 -3.75 16 22 C 0.07 2.54 6.31 86.33 0.54 3.08 16 23 N -0.69 -26.54 4.20 -495.58 -2.08 -28.62 16 24 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 25 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.16 3.36 6.25 -2.91 -0.02 3.34 16 28 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 29 H 0.19 3.08 8.06 -2.91 -0.02 3.06 16 30 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.09 2.06 6.37 -2.39 -0.02 2.04 16 32 H 0.05 2.14 6.99 -2.39 -0.02 2.12 16 33 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.34 10.39 8.86 -89.69 -0.79 9.59 16 Total: -1.00 -69.11 286.18 1.63 -67.48 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.27 Total: 12.25 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: 3.33 Total: -21.82 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -3.67 Total: -107.63 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 1.79 Total: 50.58 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.86 kcal Total: -69.11 1.63 -67.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259899707.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.441 kcal (2) G-P(sol) polarization free energy of solvation -69.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds