Wall clock time and date at job start Mon Mar 30 2020 08:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99816 * 2 1 4 4 H 1.48500 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47243 * 300.00262 * 3 2 1 6 6 H 1.48503 * 109.46974 * 60.00081 * 3 2 1 7 7 C 1.37880 * 120.00402 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99909 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99801 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.45255 * 300.03088 * 9 7 2 11 11 C 1.53030 * 109.46254 * 180.02562 * 9 7 2 12 12 C 1.53123 * 109.28009 * 180.80258 * 11 9 7 13 13 H 1.08993 * 109.52379 * 297.75279 * 12 11 9 14 14 C 1.50693 * 109.52248 * 177.55723 * 12 11 9 15 15 C 1.38163 * 119.61772 * 275.31840 * 14 12 11 16 16 C 1.38771 * 119.15060 * 180.02562 * 15 14 12 17 17 Cl 1.73606 * 120.80774 * 179.97438 * 16 15 14 18 18 C 1.38829 * 118.39319 * 0.02562 * 16 15 14 19 19 C 1.38122 * 119.14135 * 359.97438 * 18 16 15 20 20 N 1.31888 * 119.61025 * 95.05045 * 14 12 11 21 21 C 1.53118 * 109.15585 * 57.65675 * 12 11 9 22 22 C 1.53036 * 109.28007 * 302.34276 * 21 12 11 23 23 N 1.46846 * 109.52162 * 59.18140 * 22 21 12 24 24 H 0.96995 * 120.00243 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.50272 * 60.86545 * 11 9 7 26 26 H 1.08997 * 109.53617 * 300.76528 * 11 9 7 27 27 H 1.08002 * 120.42534 * 0.02562 * 15 14 12 28 28 H 1.08000 * 120.42903 * 179.97438 * 18 16 15 29 29 H 1.08000 * 119.60928 * 180.02562 * 19 18 16 30 30 H 1.09008 * 109.50062 * 182.40805 * 21 12 11 31 31 H 1.09000 * 109.50693 * 62.28496 * 21 12 11 32 32 H 1.08998 * 109.46728 * 299.16963 * 22 21 12 33 33 H 1.09003 * 109.45634 * 179.19307 * 22 21 12 34 34 H 1.00904 * 111.00089 * 62.35801 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 1 0.6246 -2.5566 0.8895 11 6 2.2458 -3.6621 -0.0005 12 6 1.4762 -4.9857 -0.0208 13 1 0.8699 -5.0684 0.8812 14 6 2.4503 -6.1339 -0.0814 15 6 2.9452 -6.5456 -1.3039 16 6 3.8414 -7.6042 -1.3485 17 17 4.4896 -8.1572 -2.8610 18 6 4.2062 -8.2111 -0.1544 19 6 3.6691 -7.7437 1.0292 20 7 2.8245 -6.7305 1.0337 21 6 0.5677 -5.0199 -1.2529 22 6 -0.3784 -3.8175 -1.2166 23 7 0.4060 -2.5763 -1.1989 24 1 -0.4850 0.8400 0.0004 25 1 2.8625 -3.6136 0.8970 26 1 2.8821 -3.5976 -0.8832 27 1 2.6387 -6.0498 -2.2131 28 1 4.9009 -9.0380 -0.1509 29 1 3.9480 -8.2100 1.9626 30 1 -0.0147 -5.9413 -1.2502 31 1 1.1770 -4.9763 -2.1556 32 1 -0.9969 -3.8689 -0.3206 33 1 -1.0168 -3.8312 -2.1000 34 1 0.9593 -2.4861 -2.0380 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259899709.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:11 Heat of formation + Delta-G solvation = 20.011683 kcal Electronic energy + Delta-G solvation = -17789.018057 eV Core-core repulsion = 14939.943787 eV Total energy + Delta-G solvation = -2849.074270 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.48200 -37.82112 -36.83735 -33.33608 -32.30194 -32.00134 -29.94231 -29.24022 -25.20938 -23.97677 -23.66814 -21.68605 -20.89449 -19.39961 -17.29038 -16.59004 -16.39472 -15.45186 -14.61286 -14.46605 -14.11541 -14.00762 -13.70689 -13.58813 -13.25537 -12.57672 -12.49800 -12.07448 -11.97484 -11.56803 -11.14951 -11.02956 -10.85481 -10.67502 -10.49194 -10.38362 -9.79009 -9.72807 -9.54888 -9.49879 -9.09265 -8.74138 -8.38279 -6.80132 -5.84773 -3.99076 0.97220 0.99774 1.78519 3.34727 3.43284 3.46394 3.64987 4.21332 4.50515 4.59655 4.76464 4.98321 5.21194 5.31616 5.34311 5.49265 5.55432 5.66651 5.82487 5.86283 5.91521 6.07720 6.18656 6.38266 6.40341 6.52752 6.61649 6.80488 6.84301 6.94790 7.54941 7.94050 7.95332 8.25786 8.64144 8.94901 9.16450 9.69783 11.19500 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.026599 B = 0.004615 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.428981 B = 6066.099258 C = 6161.413043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.084 3.916 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.537 4.537 8 H 0.053 0.947 9 C 0.224 3.776 10 H 0.039 0.961 11 C -0.129 4.129 12 C -0.042 4.042 13 H 0.089 0.911 14 C 0.169 3.831 15 C -0.163 4.163 16 C 0.010 3.990 17 Cl -0.061 7.061 18 C -0.184 4.184 19 C 0.115 3.885 20 N -0.480 5.480 21 C -0.150 4.150 22 C 0.059 3.941 23 N -0.647 5.647 24 H 0.255 0.745 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.147 0.853 28 H 0.141 0.859 29 H 0.163 0.837 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.540 -16.240 -2.840 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.123 4.123 3 Si 0.709 3.291 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.576 4.576 8 H 0.072 0.928 9 C 0.117 3.883 10 H 0.057 0.943 11 C -0.169 4.169 12 C -0.061 4.061 13 H 0.107 0.893 14 C 0.032 3.968 15 C -0.184 4.184 16 C -0.024 4.024 17 Cl -0.032 7.032 18 C -0.204 4.204 19 C -0.042 4.042 20 N -0.189 5.189 21 C -0.190 4.190 22 C -0.072 4.072 23 N -0.275 5.275 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.164 0.836 28 H 0.159 0.841 29 H 0.180 0.820 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.567 -15.489 -1.899 16.260 hybrid contribution 1.742 -0.301 -1.208 2.141 sum 6.309 -15.790 -3.106 17.286 Atomic orbital electron populations 1.70112 1.05642 1.25528 1.46909 1.24951 0.94600 0.98529 0.94224 0.86746 0.80281 0.84603 0.77483 1.19976 1.21095 1.21145 1.20986 0.92317 0.90203 1.54056 0.92838 1.19108 0.88588 0.90574 0.90073 0.94262 1.22428 0.99760 0.93654 1.01083 1.20349 0.94202 0.91522 1.00049 0.89321 1.21672 0.93979 0.94216 0.86954 1.22024 0.98243 0.97164 1.00934 1.21312 0.96920 0.96518 0.87683 1.98384 1.85053 1.88804 1.30945 1.22020 1.03578 1.02920 0.91916 1.22805 0.91909 0.92110 0.97383 1.67594 1.12405 1.07931 1.30951 1.22503 0.98892 1.00950 0.96689 1.21997 0.95978 0.88241 1.01013 1.60938 1.30494 1.30754 1.05294 0.93539 0.92450 0.93259 0.83571 0.84105 0.82021 0.92784 0.92315 0.91930 0.92472 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.29 12.77 55.43 0.71 -23.58 16 2 C 0.08 2.30 5.39 -17.82 -0.10 2.20 16 3 Si 0.88 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.54 -14.47 8.71 -34.44 -0.30 -14.77 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.22 5.39 2.29 -68.88 -0.16 5.23 16 10 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 11 C -0.13 -2.60 4.56 -26.65 -0.12 -2.72 16 12 C -0.04 -0.72 2.57 -91.65 -0.24 -0.96 16 13 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 14 C 0.17 2.66 5.79 -82.60 -0.48 2.19 16 15 C -0.16 -2.29 9.00 -39.41 -0.35 -2.64 16 16 C 0.01 0.13 6.37 -39.17 -0.25 -0.12 16 17 Cl -0.06 -0.67 29.02 -51.86 -1.51 -2.18 16 18 C -0.18 -2.03 9.94 -39.41 -0.39 -2.42 16 19 C 0.12 1.39 11.18 -17.56 -0.20 1.19 16 20 N -0.48 -7.43 10.27 -9.50 -0.10 -7.53 16 21 C -0.15 -2.36 4.85 -26.65 -0.13 -2.49 16 22 C 0.06 1.08 6.55 -3.84 -0.03 1.05 16 23 N -0.65 -14.56 5.81 -107.99 -0.63 -15.19 16 24 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.15 1.95 6.26 -52.49 -0.33 1.62 16 28 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.05 0.77 8.14 -51.92 -0.42 0.34 16 31 H 0.06 0.87 6.37 -51.93 -0.33 0.54 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.32 7.03 8.79 -39.29 -0.35 6.68 16 LS Contribution 296.52 15.07 4.47 4.47 Total: -1.00 -28.92 296.52 -9.16 -38.08 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -4.35 Total: 4.13 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -2.74 Total: -14.26 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.02 Total: -46.30 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.51 Total: -2.18 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.92 -9.16 -38.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259899709.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.091 kcal (2) G-P(sol) polarization free energy of solvation -28.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds