Wall clock time and date at job start Mon Mar 30 2020 08:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99816 * 2 1 4 4 H 1.48500 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47243 * 300.00262 * 3 2 1 6 6 H 1.48503 * 109.46974 * 60.00081 * 3 2 1 7 7 C 1.37880 * 120.00402 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99909 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99801 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.45255 * 300.03088 * 9 7 2 11 11 C 1.53030 * 109.46254 * 180.02562 * 9 7 2 12 12 C 1.53123 * 109.28009 * 180.80258 * 11 9 7 13 13 H 1.08993 * 109.52379 * 297.75279 * 12 11 9 14 14 C 1.50693 * 109.52248 * 177.55723 * 12 11 9 15 15 C 1.38163 * 119.61772 * 275.31840 * 14 12 11 16 16 C 1.38771 * 119.15060 * 180.02562 * 15 14 12 17 17 Cl 1.73606 * 120.80774 * 179.97438 * 16 15 14 18 18 C 1.38829 * 118.39319 * 0.02562 * 16 15 14 19 19 C 1.38122 * 119.14135 * 359.97438 * 18 16 15 20 20 N 1.31888 * 119.61025 * 95.05045 * 14 12 11 21 21 C 1.53118 * 109.15585 * 57.65675 * 12 11 9 22 22 C 1.53036 * 109.28007 * 302.34276 * 21 12 11 23 23 N 1.46846 * 109.52162 * 59.18140 * 22 21 12 24 24 H 0.96995 * 120.00243 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.50272 * 60.86545 * 11 9 7 26 26 H 1.08997 * 109.53617 * 300.76528 * 11 9 7 27 27 H 1.08002 * 120.42534 * 0.02562 * 15 14 12 28 28 H 1.08000 * 120.42903 * 179.97438 * 18 16 15 29 29 H 1.08000 * 119.60928 * 180.02562 * 19 18 16 30 30 H 1.09008 * 109.50062 * 182.40805 * 21 12 11 31 31 H 1.09000 * 109.50693 * 62.28496 * 21 12 11 32 32 H 1.08998 * 109.46728 * 299.16963 * 22 21 12 33 33 H 1.09003 * 109.45634 * 179.19307 * 22 21 12 34 34 H 1.00904 * 111.00089 * 62.35801 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 1 0.6246 -2.5566 0.8895 11 6 2.2458 -3.6621 -0.0005 12 6 1.4762 -4.9857 -0.0208 13 1 0.8699 -5.0684 0.8812 14 6 2.4503 -6.1339 -0.0814 15 6 2.9452 -6.5456 -1.3039 16 6 3.8414 -7.6042 -1.3485 17 17 4.4896 -8.1572 -2.8610 18 6 4.2062 -8.2111 -0.1544 19 6 3.6691 -7.7437 1.0292 20 7 2.8245 -6.7305 1.0337 21 6 0.5677 -5.0199 -1.2529 22 6 -0.3784 -3.8175 -1.2166 23 7 0.4060 -2.5763 -1.1989 24 1 -0.4850 0.8400 0.0004 25 1 2.8625 -3.6136 0.8970 26 1 2.8821 -3.5976 -0.8832 27 1 2.6387 -6.0498 -2.2131 28 1 4.9009 -9.0380 -0.1509 29 1 3.9480 -8.2100 1.9626 30 1 -0.0147 -5.9413 -1.2502 31 1 1.1770 -4.9763 -2.1556 32 1 -0.9969 -3.8689 -0.3206 33 1 -1.0168 -3.8312 -2.1000 34 1 0.9593 -2.4861 -2.0380 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259899709.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:11 Heat of formation + Delta-G solvation = 2.020447 kcal Electronic energy + Delta-G solvation = -17789.798215 eV Core-core repulsion = 14939.943787 eV Total energy + Delta-G solvation = -2849.854429 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.56761 -39.32319 -37.76508 -35.03324 -33.76673 -33.18354 -31.67764 -30.51886 -27.10259 -25.31436 -24.73813 -23.11179 -22.48702 -20.94952 -18.70064 -17.93456 -17.65997 -16.64230 -16.41162 -15.88124 -15.44545 -15.29526 -15.09628 -14.87311 -14.70514 -14.06895 -13.95623 -13.44393 -13.20709 -12.92785 -12.84352 -12.60134 -12.46874 -12.28346 -12.02741 -11.90484 -11.56237 -11.33319 -10.86363 -10.57471 -10.52372 -10.49379 -10.01429 -8.52861 -7.93848 -6.15612 -0.02877 0.01720 0.85841 1.43972 1.46531 1.56505 2.48907 2.63007 3.13933 3.27136 3.61175 3.82677 3.93918 4.00042 4.12813 4.13291 4.27104 4.43874 4.50934 4.61212 4.67549 4.74432 4.85694 4.96883 4.97594 5.08206 5.19999 5.23837 5.35360 5.53912 5.62874 5.82397 6.25487 6.69949 6.93406 7.17101 7.20570 7.57113 9.08980 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.026599 B = 0.004615 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.428981 B = 6066.099258 C = 6161.413043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.037 3.963 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.554 4.554 8 H 0.047 0.953 9 C 0.228 3.772 10 H -0.001 1.001 11 C -0.113 4.113 12 C -0.033 4.033 13 H 0.070 0.930 14 C 0.149 3.851 15 C -0.168 4.168 16 C 0.004 3.996 17 Cl -0.046 7.046 18 C -0.167 4.167 19 C 0.112 3.888 20 N -0.511 5.511 21 C -0.136 4.136 22 C 0.060 3.940 23 N -0.667 5.667 24 H 0.255 0.745 25 H 0.039 0.961 26 H 0.050 0.950 27 H 0.150 0.850 28 H 0.176 0.824 29 H 0.196 0.804 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.925 -18.011 -3.704 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.167 4.167 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.592 4.592 8 H 0.065 0.935 9 C 0.120 3.880 10 H 0.017 0.983 11 C -0.153 4.153 12 C -0.053 4.053 13 H 0.088 0.912 14 C 0.012 3.988 15 C -0.189 4.189 16 C -0.031 4.031 17 Cl -0.017 7.017 18 C -0.188 4.188 19 C -0.045 4.045 20 N -0.221 5.221 21 C -0.176 4.176 22 C -0.070 4.070 23 N -0.295 5.295 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.168 0.832 28 H 0.193 0.807 29 H 0.213 0.787 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.956 -17.270 -2.771 18.477 hybrid contribution 1.358 0.140 -0.918 1.645 sum 7.315 -17.130 -3.689 18.988 Atomic orbital electron populations 1.70237 1.06988 1.26211 1.48086 1.25646 0.95362 1.01682 0.93979 0.85737 0.79074 0.80596 0.77443 1.19580 1.20650 1.20927 1.21344 0.92281 0.91884 1.53710 0.93465 1.18824 0.88686 0.91173 0.89297 0.98328 1.22118 0.98732 0.94336 1.00161 1.20096 0.94355 0.90824 0.99992 0.91186 1.21278 0.94936 0.94639 0.87981 1.22006 0.98764 0.97856 1.00268 1.21443 0.96601 0.96184 0.88866 1.98392 1.84704 1.88501 1.30138 1.22410 1.02711 1.02792 0.90845 1.23391 0.90793 0.91044 0.99287 1.67523 1.13844 1.09408 1.31282 1.22340 0.98267 1.00422 0.96530 1.21995 0.96025 0.87860 1.01149 1.60677 1.30517 1.33791 1.04548 0.93628 0.94214 0.93084 0.83216 0.80693 0.78731 0.90483 0.90884 0.93552 0.90492 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.63 12.77 21.45 0.27 -51.36 16 2 C 0.04 2.06 5.39 84.65 0.46 2.52 16 3 Si 0.95 43.93 29.54 68.60 2.03 45.95 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.55 -30.66 8.71 25.60 0.22 -30.44 16 8 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 9 C 0.23 11.42 2.29 44.19 0.10 11.52 16 10 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 11 C -0.11 -4.70 4.56 30.65 0.14 -4.56 16 12 C -0.03 -1.15 2.57 -11.46 -0.03 -1.18 16 13 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 14 C 0.15 4.55 5.79 42.53 0.25 4.79 16 15 C -0.17 -4.42 9.00 22.38 0.20 -4.22 16 16 C 0.00 0.08 6.37 22.54 0.14 0.23 16 17 Cl -0.05 -0.89 29.02 -2.72 -0.08 -0.97 16 18 C -0.17 -3.11 9.94 22.38 0.22 -2.88 16 19 C 0.11 2.38 11.18 84.65 0.95 3.33 16 20 N -0.51 -15.26 10.27 -183.95 -1.89 -17.15 16 21 C -0.14 -4.13 4.85 30.65 0.15 -3.98 16 22 C 0.06 2.20 6.55 86.33 0.57 2.77 16 23 N -0.67 -30.66 5.81 -495.58 -2.88 -33.54 16 24 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 25 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.15 3.70 6.26 -2.91 -0.02 3.68 16 28 H 0.18 2.02 8.06 -2.91 -0.02 1.99 16 29 H 0.20 2.66 8.06 -2.91 -0.02 2.64 16 30 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.07 2.04 6.37 -2.39 -0.02 2.03 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.32 14.31 8.79 -89.69 -0.79 13.52 16 Total: -1.00 -63.72 296.52 1.14 -62.57 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.32 Total: 16.59 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 3.37 Total: -22.10 kcal Atomic # 7 Polarization: -97.55 SS G_CDS: -4.49 Total: -102.04 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -63.72 1.14 -62.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259899709.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.595 kcal (2) G-P(sol) polarization free energy of solvation -63.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds