Wall clock time and date at job start Mon Mar 30 2020 08:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99794 * 2 1 4 4 H 1.48497 * 109.47100 * 270.00123 * 3 2 1 5 5 H 1.48501 * 109.47303 * 30.00372 * 3 2 1 6 6 H 1.48501 * 109.46754 * 150.00142 * 3 2 1 7 7 C 1.37872 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00322 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99906 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.57445 * 60.15913 * 9 7 2 11 11 C 1.53123 * 109.52244 * 300.00011 * 9 7 2 12 12 C 1.53039 * 109.31189 * 297.77266 * 11 9 7 13 13 N 1.46856 * 109.51787 * 300.79882 * 12 11 9 14 14 C 1.46846 * 111.19871 * 61.74404 * 13 12 11 15 15 H 1.09004 * 109.46012 * 58.27074 * 14 13 12 16 16 C 1.50696 * 109.46446 * 178.23649 * 14 13 12 17 17 C 1.38660 * 120.79152 * 24.72383 * 16 14 13 18 18 C 1.38183 * 119.17419 * 179.73092 * 17 16 14 19 19 N 1.31883 * 120.79498 * 0.54974 * 18 17 16 20 20 C 1.31839 * 121.74131 * 359.72247 * 19 18 17 21 21 C 1.38356 * 120.74393 * 0.02562 * 20 19 18 22 22 Cl 1.73598 * 120.43546 * 179.97438 * 21 20 19 23 23 C 1.53030 * 109.52435 * 298.25760 * 14 13 12 24 24 H 0.97001 * 119.99881 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.50371 * 177.80816 * 11 9 7 26 26 H 1.09003 * 109.50070 * 57.72976 * 11 9 7 27 27 H 1.09000 * 109.46148 * 60.81334 * 12 11 9 28 28 H 1.09002 * 109.46208 * 180.79044 * 12 11 9 29 29 H 1.00903 * 110.99558 * 185.83726 * 13 12 11 30 30 H 1.07991 * 120.40930 * 359.97438 * 17 16 14 31 31 H 1.08000 * 119.60391 * 180.27664 * 18 17 16 32 32 H 1.07996 * 119.63166 * 179.97438 * 20 19 18 33 33 H 1.08997 * 109.50569 * 179.12357 * 23 14 13 34 34 H 1.09005 * 109.50161 * 299.23539 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6256 -2.5597 -0.8911 11 6 0.3708 -2.5818 1.2496 12 6 1.2583 -2.5571 2.4961 13 7 2.1906 -3.6911 2.4572 14 6 3.0789 -3.6084 1.2908 15 1 3.6339 -2.6707 1.3227 16 6 4.0453 -4.7645 1.3126 17 6 3.7300 -5.9408 1.9756 18 6 4.6387 -6.9818 1.9695 19 7 5.7981 -6.8624 1.3524 20 6 6.1348 -5.7577 0.7165 21 6 5.2743 -4.6751 0.6751 22 17 5.7261 -3.2241 -0.1640 23 6 2.2458 -3.6643 0.0084 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2033 -3.5081 1.2299 26 1 -0.3110 -1.7315 1.2715 27 1 1.8218 -1.6244 2.5223 28 1 0.6349 -2.6299 3.3873 29 1 2.7220 -3.7518 3.3128 30 1 2.7844 -6.0434 2.4870 31 1 4.3984 -7.9027 2.4798 32 1 7.0935 -5.6967 0.2229 33 1 2.9040 -3.5872 -0.8569 34 1 1.7012 -4.6078 -0.0309 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259901935.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:11:46 Heat of formation + Delta-G solvation = 20.540377 kcal Electronic energy + Delta-G solvation = -18352.550002 eV Core-core repulsion = 15503.498657 eV Total energy + Delta-G solvation = -2849.051344 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.27020 -37.87078 -36.39375 -33.69765 -32.29675 -30.99468 -30.53989 -28.93975 -25.27423 -24.01052 -23.36065 -21.93608 -20.98721 -18.65508 -17.02785 -16.50319 -15.86045 -15.78403 -15.13025 -14.66915 -14.13472 -13.92176 -13.50084 -13.34896 -12.81753 -12.34952 -12.18547 -11.91550 -11.85928 -11.51651 -11.20471 -10.98183 -10.95317 -10.60836 -10.40950 -9.90602 -9.67343 -9.47598 -9.17620 -9.06102 -8.85908 -8.80052 -8.35328 -7.72055 -6.01658 -4.06700 1.02812 1.26884 2.25240 3.26196 3.33744 3.36312 3.76403 4.40245 4.45975 4.51069 4.86872 5.08564 5.10610 5.29197 5.40388 5.75419 5.85781 5.94371 6.06620 6.21611 6.31955 6.41630 6.57507 6.64542 6.67072 6.84546 6.96038 7.16554 7.44815 7.56239 7.66695 7.86412 7.88945 8.04696 8.13243 8.42792 8.96207 9.57321 11.04007 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.024613 B = 0.007035 C = 0.005878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.358652 B = 3978.972287 C = 4762.170535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.882 3.118 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.506 4.506 8 H 0.055 0.945 9 C 0.045 3.955 10 H 0.028 0.972 11 C -0.107 4.107 12 C 0.074 3.926 13 N -0.686 5.686 14 C 0.130 3.870 15 H 0.070 0.930 16 C -0.020 4.020 17 C -0.142 4.142 18 C 0.090 3.910 19 N -0.482 5.482 20 C 0.105 3.895 21 C -0.091 4.091 22 Cl -0.047 7.047 23 C -0.089 4.089 24 H 0.259 0.741 25 H 0.023 0.977 26 H 0.095 0.905 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.324 0.676 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.053 0.947 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.569 -9.349 4.156 12.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.710 3.290 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.027 3.973 10 H 0.047 0.953 11 C -0.145 4.145 12 C -0.054 4.054 13 N -0.316 5.316 14 C 0.020 3.980 15 H 0.088 0.912 16 C -0.029 4.029 17 C -0.162 4.162 18 C -0.066 4.066 19 N -0.191 5.191 20 C -0.053 4.053 21 C -0.120 4.120 22 Cl -0.018 7.018 23 C -0.127 4.127 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.113 0.887 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.140 0.860 30 H 0.171 0.829 31 H 0.175 0.825 32 H 0.177 0.823 33 H 0.071 0.929 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.572 -10.193 3.783 13.250 hybrid contribution 0.537 2.522 0.178 2.584 sum 8.109 -7.672 3.960 11.845 Atomic orbital electron populations 1.69859 1.05776 1.26279 1.50894 1.24917 0.94746 0.98753 0.95336 0.86754 0.79961 0.84105 0.78188 1.20705 1.21259 1.20066 1.21169 0.92759 0.90462 1.50065 0.92685 1.18733 0.92566 0.91552 0.94464 0.95342 1.21585 0.98275 1.00184 0.94479 1.21840 0.94191 0.90748 0.98668 1.60457 1.20860 1.46602 1.03686 1.20470 0.91164 0.92794 0.93528 0.91190 1.20665 0.92568 0.97049 0.92589 1.22176 1.01794 0.92331 0.99943 1.22848 0.89191 0.98743 0.95821 1.67750 1.18839 1.23989 1.08554 1.22655 0.98965 0.87303 0.96371 1.22077 0.96802 0.91303 1.01822 1.98403 1.92133 1.35289 1.75942 1.21599 0.97959 0.99683 0.93472 0.93062 0.95792 0.88706 0.94066 0.93213 0.86010 0.82876 0.82466 0.82340 0.92864 0.93861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.49 11.31 55.43 0.63 -23.86 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 3 Si 0.88 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.51 -13.09 6.74 -34.44 -0.23 -13.32 16 8 H 0.05 1.43 6.88 -52.49 -0.36 1.07 16 9 C 0.05 1.09 2.62 -91.60 -0.24 0.85 16 10 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 11 C -0.11 -2.42 5.41 -26.65 -0.14 -2.57 16 12 C 0.07 1.46 6.34 -3.83 -0.02 1.44 16 13 N -0.69 -11.86 5.39 -107.98 -0.58 -12.45 16 14 C 0.13 2.37 2.01 -68.88 -0.14 2.23 16 15 H 0.07 1.44 5.89 -51.93 -0.31 1.13 16 16 C -0.02 -0.31 5.01 -104.28 -0.52 -0.83 16 17 C -0.14 -1.93 9.30 -39.45 -0.37 -2.30 16 18 C 0.09 1.12 11.18 -17.55 -0.20 0.92 16 19 N -0.48 -6.66 10.36 -13.22 -0.14 -6.80 16 20 C 0.10 1.43 10.99 -17.51 -0.19 1.24 16 21 C -0.09 -1.37 6.34 -39.35 -0.25 -1.62 16 22 Cl -0.05 -0.73 27.49 -51.86 -1.43 -2.16 16 23 C -0.09 -1.82 4.82 -26.61 -0.13 -1.95 16 24 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 2.41 6.02 -51.93 -0.31 2.09 16 27 H 0.04 0.91 7.31 -51.93 -0.38 0.53 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.32 4.90 8.65 -39.29 -0.34 4.56 16 30 H 0.15 1.94 7.36 -52.49 -0.39 1.56 16 31 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.05 1.10 8.05 -51.93 -0.42 0.68 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 288.60 15.07 4.35 4.35 Total: -1.00 -27.35 288.60 -8.89 -36.24 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -4.17 Total: 3.18 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -2.53 Total: -14.33 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -0.09 Total: -43.11 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.43 Total: -2.16 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.35 -8.89 -36.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259901935.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.781 kcal (2) G-P(sol) polarization free energy of solvation -27.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds