Wall clock time and date at job start Mon Mar 30 2020 08:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99794 * 2 1 4 4 H 1.48497 * 109.47100 * 270.00123 * 3 2 1 5 5 H 1.48501 * 109.47303 * 30.00372 * 3 2 1 6 6 H 1.48501 * 109.46754 * 150.00142 * 3 2 1 7 7 C 1.37872 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00322 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99906 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.57445 * 60.15913 * 9 7 2 11 11 C 1.53123 * 109.52244 * 300.00011 * 9 7 2 12 12 C 1.53039 * 109.31189 * 297.77266 * 11 9 7 13 13 N 1.46856 * 109.51787 * 300.79882 * 12 11 9 14 14 C 1.46846 * 111.19871 * 61.74404 * 13 12 11 15 15 H 1.09004 * 109.46012 * 58.27074 * 14 13 12 16 16 C 1.50696 * 109.46446 * 178.23649 * 14 13 12 17 17 C 1.38660 * 120.79152 * 24.72383 * 16 14 13 18 18 C 1.38183 * 119.17419 * 179.73092 * 17 16 14 19 19 N 1.31883 * 120.79498 * 0.54974 * 18 17 16 20 20 C 1.31839 * 121.74131 * 359.72247 * 19 18 17 21 21 C 1.38356 * 120.74393 * 0.02562 * 20 19 18 22 22 Cl 1.73598 * 120.43546 * 179.97438 * 21 20 19 23 23 C 1.53030 * 109.52435 * 298.25760 * 14 13 12 24 24 H 0.97001 * 119.99881 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.50371 * 177.80816 * 11 9 7 26 26 H 1.09003 * 109.50070 * 57.72976 * 11 9 7 27 27 H 1.09000 * 109.46148 * 60.81334 * 12 11 9 28 28 H 1.09002 * 109.46208 * 180.79044 * 12 11 9 29 29 H 1.00903 * 110.99558 * 185.83726 * 13 12 11 30 30 H 1.07991 * 120.40930 * 359.97438 * 17 16 14 31 31 H 1.08000 * 119.60391 * 180.27664 * 18 17 16 32 32 H 1.07996 * 119.63166 * 179.97438 * 20 19 18 33 33 H 1.08997 * 109.50569 * 179.12357 * 23 14 13 34 34 H 1.09005 * 109.50161 * 299.23539 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6256 -2.5597 -0.8911 11 6 0.3708 -2.5818 1.2496 12 6 1.2583 -2.5571 2.4961 13 7 2.1906 -3.6911 2.4572 14 6 3.0789 -3.6084 1.2908 15 1 3.6339 -2.6707 1.3227 16 6 4.0453 -4.7645 1.3126 17 6 3.7300 -5.9408 1.9756 18 6 4.6387 -6.9818 1.9695 19 7 5.7981 -6.8624 1.3524 20 6 6.1348 -5.7577 0.7165 21 6 5.2743 -4.6751 0.6751 22 17 5.7261 -3.2241 -0.1640 23 6 2.2458 -3.6643 0.0084 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2033 -3.5081 1.2299 26 1 -0.3110 -1.7315 1.2715 27 1 1.8218 -1.6244 2.5223 28 1 0.6349 -2.6299 3.3873 29 1 2.7220 -3.7518 3.3128 30 1 2.7844 -6.0434 2.4870 31 1 4.3984 -7.9027 2.4798 32 1 7.0935 -5.6967 0.2229 33 1 2.9040 -3.5872 -0.8569 34 1 1.7012 -4.6078 -0.0309 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259901935.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:11:43 Heat of formation + Delta-G solvation = 4.393514 kcal Electronic energy + Delta-G solvation = -18353.250182 eV Core-core repulsion = 15503.498657 eV Total energy + Delta-G solvation = -2849.751525 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.41799 -39.42594 -37.57428 -35.38089 -33.81591 -32.48596 -31.91349 -30.43458 -27.22844 -25.37993 -24.51897 -23.57610 -22.37743 -20.46658 -18.27476 -17.76519 -17.66346 -17.00907 -16.59365 -16.45039 -15.34223 -15.20138 -14.94975 -14.77772 -14.58804 -14.00074 -13.92425 -13.25781 -13.00979 -12.97891 -12.90988 -12.86091 -12.47306 -12.19988 -12.16421 -11.74715 -11.28924 -11.02373 -10.80589 -10.53309 -10.47720 -10.28435 -9.90695 -9.27313 -8.06636 -6.16619 -0.03385 0.14668 1.10073 1.36124 1.39294 1.46514 2.41906 2.70613 3.15840 3.21463 3.51596 3.66660 3.92865 4.00099 4.27165 4.34005 4.50710 4.56809 4.66298 4.75568 4.79928 4.93556 4.99877 5.10925 5.21351 5.26253 5.41753 5.59696 5.60179 5.64614 5.81077 5.99315 6.29618 6.42002 6.63492 6.85287 6.92601 7.49447 8.98129 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.024613 B = 0.007035 C = 0.005878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.358652 B = 3978.972287 C = 4762.170535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.020 3.980 3 Si 0.935 3.065 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.508 4.508 8 H 0.050 0.950 9 C 0.040 3.960 10 H -0.009 1.009 11 C -0.102 4.102 12 C 0.084 3.916 13 N -0.671 5.671 14 C 0.141 3.859 15 H 0.045 0.955 16 C -0.036 4.036 17 C -0.138 4.138 18 C 0.101 3.899 19 N -0.490 5.490 20 C 0.109 3.891 21 C -0.101 4.101 22 Cl -0.061 7.061 23 C -0.080 4.080 24 H 0.259 0.741 25 H 0.031 0.969 26 H 0.065 0.935 27 H 0.015 0.985 28 H 0.074 0.926 29 H 0.343 0.657 30 H 0.165 0.835 31 H 0.196 0.804 32 H 0.180 0.820 33 H 0.045 0.955 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.721 -10.951 5.445 15.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.179 4.179 3 Si 0.762 3.238 4 H -0.206 1.206 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.546 4.546 8 H 0.068 0.932 9 C 0.022 3.978 10 H 0.009 0.991 11 C -0.140 4.140 12 C -0.045 4.045 13 N -0.303 5.303 14 C 0.031 3.969 15 H 0.063 0.937 16 C -0.045 4.045 17 C -0.157 4.157 18 C -0.055 4.055 19 N -0.199 5.199 20 C -0.049 4.049 21 C -0.130 4.130 22 Cl -0.032 7.032 23 C -0.118 4.118 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.092 0.908 29 H 0.161 0.839 30 H 0.183 0.817 31 H 0.212 0.788 32 H 0.197 0.803 33 H 0.063 0.937 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.744 -11.803 5.080 15.543 hybrid contribution 0.174 2.927 -0.232 2.942 sum 8.917 -8.876 4.848 13.484 Atomic orbital electron populations 1.69987 1.06844 1.26748 1.51863 1.25540 0.95419 1.01505 0.95426 0.85912 0.78977 0.80913 0.78039 1.20647 1.20921 1.19681 1.21354 0.92578 0.91422 1.49268 0.93168 1.18712 0.93037 0.92480 0.93608 0.99089 1.21423 0.98119 0.99189 0.95263 1.21635 0.94241 0.90529 0.98111 1.60374 1.20694 1.44804 1.04392 1.20136 0.90969 0.93204 0.92560 0.93692 1.20471 0.92479 0.97058 0.94535 1.22312 1.02485 0.91615 0.99327 1.23422 0.88046 0.99517 0.94524 1.67867 1.19519 1.23793 1.08754 1.22965 0.99401 0.86619 0.95898 1.22182 0.97177 0.91377 1.02305 1.98397 1.92218 1.36274 1.76326 1.21413 0.97323 0.98232 0.94845 0.93204 0.95002 0.91682 0.96618 0.90764 0.83922 0.81719 0.78758 0.80314 0.93660 0.93211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.63 11.31 21.45 0.24 -51.39 16 2 C 0.02 1.06 5.30 84.65 0.45 1.51 16 3 Si 0.93 43.27 29.54 68.60 2.03 45.30 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.51 -26.84 6.74 25.60 0.17 -26.67 16 8 H 0.05 2.66 6.88 -2.91 -0.02 2.64 16 9 C 0.04 1.97 2.62 -11.43 -0.03 1.94 16 10 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 11 C -0.10 -4.65 5.41 30.65 0.17 -4.48 16 12 C 0.08 3.25 6.34 86.32 0.55 3.80 16 13 N -0.67 -22.00 5.39 -495.55 -2.67 -24.67 16 14 C 0.14 5.03 2.01 44.19 0.09 5.12 16 15 H 0.05 1.85 5.89 -2.38 -0.01 1.84 16 16 C -0.04 -1.08 5.01 -19.65 -0.10 -1.18 16 17 C -0.14 -3.28 9.30 22.36 0.21 -3.07 16 18 C 0.10 2.10 11.18 84.67 0.95 3.04 16 19 N -0.49 -11.89 10.36 -195.75 -2.03 -13.92 16 20 C 0.11 2.69 10.99 84.72 0.93 3.62 16 21 C -0.10 -2.91 6.34 22.42 0.14 -2.77 16 22 Cl -0.06 -1.90 27.49 -2.72 -0.07 -1.97 16 23 C -0.08 -3.28 4.82 30.67 0.15 -3.14 16 24 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 25 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.06 3.39 6.02 -2.39 -0.01 3.37 16 27 H 0.02 0.69 7.31 -2.39 -0.02 0.67 16 28 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.34 9.45 8.65 -89.69 -0.78 8.68 16 30 H 0.17 3.54 7.36 -2.92 -0.02 3.52 16 31 H 0.20 2.54 8.06 -2.91 -0.02 2.52 16 32 H 0.18 3.56 8.06 -2.91 -0.02 3.53 16 33 H 0.04 1.90 8.05 -2.39 -0.02 1.88 16 34 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -59.28 288.60 1.51 -57.77 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 0.34 Total: 11.16 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: 3.67 Total: -22.28 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -4.46 Total: -89.97 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.07 Total: -1.97 kcal Total: -59.28 1.51 -57.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259901935.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.163 kcal (2) G-P(sol) polarization free energy of solvation -59.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds