Wall clock time and date at job start Mon Mar 30 2020 08:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00228 * 2 1 4 4 H 1.48495 * 109.47196 * 85.08690 * 3 2 1 5 5 H 1.48503 * 109.47281 * 205.08901 * 3 2 1 6 6 H 1.48505 * 109.47148 * 325.08714 * 3 2 1 7 7 C 1.37878 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00121 * 172.56398 * 7 2 1 9 9 C 1.50703 * 120.00140 * 352.57016 * 7 2 1 10 10 H 1.09001 * 109.52303 * 56.22012 * 9 7 2 11 11 C 1.53126 * 109.51835 * 296.10201 * 9 7 2 12 12 C 1.53044 * 109.27741 * 182.44258 * 11 9 7 13 13 N 1.46844 * 109.52324 * 59.17351 * 12 11 9 14 14 C 1.46848 * 111.19979 * 298.26129 * 13 12 11 15 15 H 1.09001 * 109.46360 * 301.73254 * 14 13 12 16 16 C 1.50700 * 109.46081 * 181.76172 * 14 13 12 17 17 C 1.38658 * 120.79480 * 339.71482 * 16 14 13 18 18 C 1.38187 * 119.17709 * 179.73120 * 17 16 14 19 19 N 1.31888 * 120.79306 * 0.56012 * 18 17 16 20 20 C 1.31847 * 121.73656 * 359.71829 * 19 18 17 21 21 C 1.38348 * 120.74759 * 359.97438 * 20 19 18 22 22 Cl 1.73593 * 120.43315 * 179.97438 * 21 20 19 23 23 C 1.53044 * 109.57590 * 61.71208 * 14 13 12 24 24 H 0.96997 * 119.99828 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.50240 * 302.37487 * 11 9 7 26 26 H 1.08992 * 109.50592 * 62.50102 * 11 9 7 27 27 H 1.08993 * 109.46035 * 179.19423 * 12 11 9 28 28 H 1.09001 * 109.45571 * 299.15951 * 12 11 9 29 29 H 1.00903 * 110.99930 * 62.35836 * 13 12 11 30 30 H 1.07996 * 120.40977 * 359.97438 * 17 16 14 31 31 H 1.07996 * 119.60558 * 180.27717 * 18 17 16 32 32 H 1.07997 * 119.62210 * 180.02562 * 20 19 18 33 33 H 1.09001 * 109.55387 * 180.94215 * 23 14 13 34 34 H 1.09000 * 109.45148 * 60.82398 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3929 2.1063 1.3949 5 1 3.5948 1.4123 -0.5937 6 1 1.5024 2.6205 -0.8013 7 6 2.0045 -1.1941 -0.0005 8 1 3.0777 -1.1980 -0.1216 9 6 1.2605 -2.4938 0.1677 10 1 0.4924 -2.5760 -0.6014 11 6 0.6054 -2.5330 1.5512 12 6 -0.0972 -3.8795 1.7396 13 7 0.8820 -4.9662 1.6108 14 6 1.4898 -4.9777 0.2740 15 1 0.7094 -5.0881 -0.4789 16 6 2.4539 -6.1314 0.1707 17 6 2.9751 -6.7252 1.3102 18 6 3.8522 -7.7846 1.1767 19 7 4.2030 -8.2245 -0.0162 20 6 3.7325 -7.6814 -1.1216 21 6 2.8454 -6.6212 -1.0668 22 17 2.2315 -5.9120 -2.5275 23 6 2.2396 -3.6641 0.0404 24 1 -0.4850 0.8400 0.0004 25 1 1.3693 -2.4106 2.3191 26 1 -0.1244 -1.7274 1.6313 27 1 -0.5525 -3.9162 2.7292 28 1 -0.8702 -3.9952 0.9798 29 1 1.5883 -4.9035 2.3286 30 1 2.6959 -6.3667 2.2899 31 1 4.2588 -8.2552 2.0596 32 1 4.0426 -8.0691 -2.0807 33 1 2.6765 -3.6661 -0.9582 34 1 3.0298 -3.5600 0.7838 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259901946.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:11:56 Heat of formation + Delta-G solvation = 16.379340 kcal Electronic energy + Delta-G solvation = -18047.282250 eV Core-core repulsion = 15198.050470 eV Total energy + Delta-G solvation = -2849.231781 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.38623 -38.08235 -36.49386 -33.78426 -32.55831 -31.09335 -30.41073 -29.14096 -25.47221 -24.01075 -23.45546 -21.76713 -21.02155 -19.38167 -17.26516 -16.60165 -16.24379 -15.77412 -14.86591 -14.43865 -14.28621 -14.04397 -13.67231 -13.46175 -13.11203 -12.52812 -12.22789 -12.06936 -11.89609 -11.66709 -11.18936 -11.03942 -10.93837 -10.76849 -10.51373 -10.20754 -9.70900 -9.60156 -9.42819 -9.29812 -9.01592 -8.90318 -8.40955 -7.76500 -6.07118 -4.10678 0.96219 1.20073 2.15994 3.25639 3.33478 3.36493 3.69472 4.37555 4.40044 4.40482 4.76390 4.91883 5.03018 5.23882 5.29655 5.54550 5.67500 5.84104 5.87482 5.95439 6.13541 6.25604 6.35621 6.43308 6.53360 6.58603 6.85592 6.96754 7.18369 7.36337 7.67394 7.76549 7.82780 7.86241 7.96473 8.35808 8.92665 9.53637 11.00737 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.024714 B = 0.005687 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.681497 B = 4922.004817 C = 5303.288988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.286 1.286 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.053 3.947 10 H 0.032 0.968 11 C -0.142 4.142 12 C 0.055 3.945 13 N -0.682 5.682 14 C 0.118 3.882 15 H 0.096 0.904 16 C -0.007 4.007 17 C -0.150 4.150 18 C 0.097 3.903 19 N -0.482 5.482 20 C 0.110 3.890 21 C -0.090 4.090 22 Cl -0.048 7.048 23 C -0.129 4.129 24 H 0.260 0.740 25 H 0.037 0.963 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.331 0.669 30 H 0.145 0.855 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.059 0.941 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.793 -12.948 1.311 13.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.034 3.966 10 H 0.050 0.950 11 C -0.181 4.181 12 C -0.074 4.074 13 N -0.311 5.311 14 C 0.007 3.993 15 H 0.114 0.886 16 C -0.016 4.016 17 C -0.170 4.170 18 C -0.060 4.060 19 N -0.191 5.191 20 C -0.048 4.048 21 C -0.119 4.119 22 Cl -0.020 7.020 23 C -0.168 4.168 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.101 0.899 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.149 0.851 30 H 0.163 0.837 31 H 0.177 0.823 32 H 0.178 0.822 33 H 0.078 0.922 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.671 -13.935 0.965 14.443 hybrid contribution 0.410 2.595 0.030 2.627 sum 4.080 -11.340 0.995 12.093 Atomic orbital electron populations 1.69939 1.05879 1.26530 1.50262 1.24943 0.94788 0.99004 0.94978 0.86657 0.80072 0.83780 0.77987 1.20731 1.19917 1.21226 1.21135 0.93552 0.90756 1.49918 0.92822 1.18646 0.93433 0.91301 0.93209 0.94957 1.22243 1.00084 0.96293 0.99500 1.22111 0.94554 0.90010 1.00707 1.60967 1.19104 1.47860 1.03171 1.20660 0.94373 0.91170 0.93050 0.88591 1.20430 0.94773 0.95265 0.91167 1.22007 0.98076 0.97376 0.99549 1.22810 0.94123 0.93680 0.95345 1.67775 1.23918 1.28976 0.98435 1.22680 0.92682 0.91622 0.97850 1.21971 1.01965 0.99172 0.88821 1.98392 1.86340 1.82996 1.34228 1.22304 0.99249 0.93962 1.01269 0.92998 0.94453 0.89940 0.92056 0.91552 0.85101 0.83749 0.82349 0.82183 0.92226 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.90 11.98 55.43 0.66 -24.24 16 2 C 0.06 1.76 5.24 -17.82 -0.09 1.66 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -13.82 8.51 -34.44 -0.29 -14.12 16 8 H 0.05 1.45 7.76 -52.49 -0.41 1.04 16 9 C 0.05 1.25 2.05 -91.65 -0.19 1.06 16 10 H 0.03 0.86 8.13 -51.93 -0.42 0.43 16 11 C -0.14 -3.08 5.15 -26.64 -0.14 -3.22 16 12 C 0.05 0.98 6.55 -3.83 -0.03 0.95 16 13 N -0.68 -10.91 6.07 -107.98 -0.66 -11.57 16 14 C 0.12 1.98 2.15 -68.87 -0.15 1.84 16 15 H 0.10 1.74 7.46 -51.93 -0.39 1.35 16 16 C -0.01 -0.11 5.12 -104.28 -0.53 -0.64 16 17 C -0.15 -1.91 9.32 -39.44 -0.37 -2.28 16 18 C 0.10 1.14 11.18 -17.55 -0.20 0.95 16 19 N -0.48 -6.42 10.36 -13.22 -0.14 -6.55 16 20 C 0.11 1.42 10.99 -17.50 -0.19 1.23 16 21 C -0.09 -1.29 6.34 -39.36 -0.25 -1.54 16 22 Cl -0.05 -0.70 26.93 -51.86 -1.40 -2.10 16 23 C -0.13 -2.56 4.54 -26.65 -0.12 -2.68 16 24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 2.03 6.76 -51.93 -0.35 1.68 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.33 4.86 7.04 -39.29 -0.28 4.58 16 30 H 0.14 1.61 6.33 -52.49 -0.33 1.27 16 31 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 33 H 0.06 1.22 7.37 -51.93 -0.38 0.83 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 291.18 15.07 4.39 4.39 Total: -1.00 -28.19 291.18 -8.93 -37.13 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -4.23 Total: 3.71 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -2.54 Total: -16.79 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -0.13 Total: -42.36 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.40 Total: -2.10 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.19 -8.93 -37.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259901946.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.507 kcal (2) G-P(sol) polarization free energy of solvation -28.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds