Wall clock time and date at job start Mon Mar 30 2020 08:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00228 * 2 1 4 4 H 1.48495 * 109.47196 * 85.08690 * 3 2 1 5 5 H 1.48503 * 109.47281 * 205.08901 * 3 2 1 6 6 H 1.48505 * 109.47148 * 325.08714 * 3 2 1 7 7 C 1.37878 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00121 * 172.56398 * 7 2 1 9 9 C 1.50703 * 120.00140 * 352.57016 * 7 2 1 10 10 H 1.09001 * 109.52303 * 56.22012 * 9 7 2 11 11 C 1.53126 * 109.51835 * 296.10201 * 9 7 2 12 12 C 1.53044 * 109.27741 * 182.44258 * 11 9 7 13 13 N 1.46844 * 109.52324 * 59.17351 * 12 11 9 14 14 C 1.46848 * 111.19979 * 298.26129 * 13 12 11 15 15 H 1.09001 * 109.46360 * 301.73254 * 14 13 12 16 16 C 1.50700 * 109.46081 * 181.76172 * 14 13 12 17 17 C 1.38658 * 120.79480 * 339.71482 * 16 14 13 18 18 C 1.38187 * 119.17709 * 179.73120 * 17 16 14 19 19 N 1.31888 * 120.79306 * 0.56012 * 18 17 16 20 20 C 1.31847 * 121.73656 * 359.71829 * 19 18 17 21 21 C 1.38348 * 120.74759 * 359.97438 * 20 19 18 22 22 Cl 1.73593 * 120.43315 * 179.97438 * 21 20 19 23 23 C 1.53044 * 109.57590 * 61.71208 * 14 13 12 24 24 H 0.96997 * 119.99828 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.50240 * 302.37487 * 11 9 7 26 26 H 1.08992 * 109.50592 * 62.50102 * 11 9 7 27 27 H 1.08993 * 109.46035 * 179.19423 * 12 11 9 28 28 H 1.09001 * 109.45571 * 299.15951 * 12 11 9 29 29 H 1.00903 * 110.99930 * 62.35836 * 13 12 11 30 30 H 1.07996 * 120.40977 * 359.97438 * 17 16 14 31 31 H 1.07996 * 119.60558 * 180.27717 * 18 17 16 32 32 H 1.07997 * 119.62210 * 180.02562 * 20 19 18 33 33 H 1.09001 * 109.55387 * 180.94215 * 23 14 13 34 34 H 1.09000 * 109.45148 * 60.82398 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3929 2.1063 1.3949 5 1 3.5948 1.4123 -0.5937 6 1 1.5024 2.6205 -0.8013 7 6 2.0045 -1.1941 -0.0005 8 1 3.0777 -1.1980 -0.1216 9 6 1.2605 -2.4938 0.1677 10 1 0.4924 -2.5760 -0.6014 11 6 0.6054 -2.5330 1.5512 12 6 -0.0972 -3.8795 1.7396 13 7 0.8820 -4.9662 1.6108 14 6 1.4898 -4.9777 0.2740 15 1 0.7094 -5.0881 -0.4789 16 6 2.4539 -6.1314 0.1707 17 6 2.9751 -6.7252 1.3102 18 6 3.8522 -7.7846 1.1767 19 7 4.2030 -8.2245 -0.0162 20 6 3.7325 -7.6814 -1.1216 21 6 2.8454 -6.6212 -1.0668 22 17 2.2315 -5.9120 -2.5275 23 6 2.2396 -3.6641 0.0404 24 1 -0.4850 0.8400 0.0004 25 1 1.3693 -2.4106 2.3191 26 1 -0.1244 -1.7274 1.6313 27 1 -0.5525 -3.9162 2.7292 28 1 -0.8702 -3.9952 0.9798 29 1 1.5883 -4.9035 2.3286 30 1 2.6959 -6.3667 2.2899 31 1 4.2588 -8.2552 2.0596 32 1 4.0426 -8.0691 -2.0807 33 1 2.6765 -3.6661 -0.9582 34 1 3.0298 -3.5600 0.7838 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259901946.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:11:55 Heat of formation + Delta-G solvation = -0.778366 kcal Electronic energy + Delta-G solvation = -18048.026264 eV Core-core repulsion = 15198.050470 eV Total energy + Delta-G solvation = -2849.975794 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.48213 -39.54216 -37.59815 -35.50047 -34.01809 -32.41185 -31.88173 -30.55488 -27.32640 -25.37376 -24.56202 -23.33255 -22.36526 -21.07110 -18.70741 -17.96237 -17.65880 -16.90228 -16.58465 -15.96565 -15.48733 -15.30252 -15.11208 -14.78278 -14.71675 -14.16297 -13.84308 -13.39131 -13.20304 -13.01036 -12.84046 -12.60844 -12.58422 -12.28142 -12.14055 -12.00801 -11.38899 -11.33509 -10.94756 -10.53702 -10.50647 -10.46611 -9.93321 -9.27569 -8.14492 -6.25793 -0.03866 0.13434 1.07776 1.36409 1.38434 1.47795 2.39428 2.69124 3.11935 3.14351 3.50628 3.61869 3.83819 3.97271 4.09502 4.28968 4.38191 4.48768 4.57523 4.63923 4.69165 4.76419 4.88106 5.00587 5.14834 5.17158 5.22401 5.40418 5.56049 5.57546 5.85635 5.91952 6.14640 6.31479 6.47661 6.84647 6.85544 7.41664 8.91461 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.024714 B = 0.005687 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.681497 B = 4922.004817 C = 5303.288988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.018 3.982 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.284 1.284 7 C -0.535 4.535 8 H 0.046 0.954 9 C 0.050 3.950 10 H -0.006 1.006 11 C -0.132 4.132 12 C 0.067 3.933 13 N -0.666 5.666 14 C 0.130 3.870 15 H 0.079 0.921 16 C -0.026 4.026 17 C -0.147 4.147 18 C 0.104 3.896 19 N -0.492 5.492 20 C 0.110 3.890 21 C -0.101 4.101 22 Cl -0.059 7.059 23 C -0.116 4.116 24 H 0.261 0.739 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.345 0.655 30 H 0.164 0.836 31 H 0.196 0.804 32 H 0.181 0.819 33 H 0.048 0.952 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.012 -14.287 2.664 15.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.181 4.181 3 Si 0.773 3.227 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.210 1.210 7 C -0.573 4.573 8 H 0.065 0.935 9 C 0.031 3.969 10 H 0.012 0.988 11 C -0.172 4.172 12 C -0.063 4.063 13 N -0.296 5.296 14 C 0.020 3.980 15 H 0.097 0.903 16 C -0.035 4.035 17 C -0.167 4.167 18 C -0.052 4.052 19 N -0.201 5.201 20 C -0.047 4.047 21 C -0.130 4.130 22 Cl -0.031 7.031 23 C -0.155 4.155 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.164 0.836 30 H 0.181 0.819 31 H 0.213 0.787 32 H 0.198 0.802 33 H 0.067 0.933 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.902 -15.287 2.322 16.221 hybrid contribution 0.063 2.971 -0.395 2.998 sum 4.964 -12.316 1.927 13.418 Atomic orbital electron populations 1.70058 1.07109 1.27212 1.50999 1.25662 0.95554 1.02131 0.94765 0.85716 0.78853 0.79950 0.78204 1.19950 1.19581 1.20980 1.21504 0.93465 0.92490 1.49880 0.93524 1.18588 0.93160 0.91924 0.93234 0.98774 1.22067 0.99336 0.97683 0.98091 1.21963 0.94354 0.88094 1.01853 1.60943 1.19193 1.46309 1.03130 1.20358 0.94049 0.90585 0.93029 0.90264 1.20304 0.95377 0.95407 0.92432 1.22240 0.97700 0.97289 0.99481 1.23399 0.92944 0.92830 0.96030 1.67877 1.24086 1.29154 0.98980 1.22992 0.91915 0.90916 0.98863 1.22098 1.02715 0.99890 0.88325 1.98388 1.86559 1.83256 1.34864 1.22087 0.98382 0.94377 1.00647 0.93003 0.94366 0.93254 0.89330 0.92667 0.83620 0.81901 0.78693 0.80218 0.93336 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.65 11.98 21.45 0.26 -52.39 16 2 C 0.02 1.00 5.24 84.66 0.44 1.44 16 3 Si 0.95 43.54 29.54 68.60 2.03 45.57 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.54 -29.37 8.51 25.60 0.22 -29.15 16 8 H 0.05 2.56 7.76 -2.91 -0.02 2.53 16 9 C 0.05 2.42 2.05 -11.46 -0.02 2.40 16 10 H -0.01 -0.33 8.13 -2.39 -0.02 -0.35 16 11 C -0.13 -5.82 5.15 30.65 0.16 -5.66 16 12 C 0.07 2.32 6.55 86.33 0.57 2.88 16 13 N -0.67 -20.12 6.07 -495.55 -3.01 -23.13 16 14 C 0.13 4.32 2.15 44.19 0.10 4.42 16 15 H 0.08 2.91 7.46 -2.39 -0.02 2.89 16 16 C -0.03 -0.74 5.12 -19.64 -0.10 -0.84 16 17 C -0.15 -3.30 9.32 22.36 0.21 -3.09 16 18 C 0.10 2.08 11.18 84.67 0.95 3.02 16 19 N -0.49 -11.64 10.36 -195.75 -2.03 -13.66 16 20 C 0.11 2.65 10.99 84.72 0.93 3.58 16 21 C -0.10 -2.78 6.34 22.42 0.14 -2.63 16 22 Cl -0.06 -1.72 26.93 -2.72 -0.07 -1.80 16 23 C -0.12 -4.63 4.54 30.65 0.14 -4.49 16 24 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 25 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.05 2.49 6.76 -2.39 -0.02 2.48 16 27 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.34 9.11 7.04 -89.69 -0.63 8.48 16 30 H 0.16 2.98 6.33 -2.91 -0.02 2.96 16 31 H 0.20 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.18 3.43 8.06 -2.91 -0.02 3.40 16 33 H 0.05 2.02 7.37 -2.39 -0.02 2.00 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -61.63 291.18 1.38 -60.25 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.48 Total: 13.30 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: 3.72 Total: -28.13 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -4.78 Total: -89.18 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.07 Total: -1.80 kcal Total: -61.63 1.38 -60.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259901946.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.468 kcal (2) G-P(sol) polarization free energy of solvation -61.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds