Wall clock time and date at job start Mon Mar 30 2020 06:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86799 * 119.99918 * 2 1 4 4 H 1.48503 * 109.47214 * 270.00247 * 3 2 1 5 5 H 1.48505 * 109.47385 * 29.99831 * 3 2 1 6 6 H 1.48501 * 109.47209 * 149.99956 * 3 2 1 7 7 C 1.37878 * 120.00516 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00332 * 187.64087 * 7 2 1 9 9 C 1.50707 * 119.99474 * 7.63458 * 7 2 1 10 10 H 1.08997 * 109.70133 * 26.26172 * 9 7 2 11 11 C 1.53624 * 109.65855 * 146.84818 * 9 7 2 12 12 C 1.53048 * 109.23838 * 174.54941 * 11 9 7 13 13 C 1.53039 * 109.53544 * 298.51151 * 12 11 9 14 14 C 1.53190 * 109.31371 * 61.36953 * 13 12 11 15 15 N 1.46920 * 109.58693 * 265.90087 * 9 7 2 16 16 C 1.34778 * 120.63502 * 6.63060 * 15 9 7 17 17 O 1.21635 * 119.99628 * 4.92214 * 16 15 9 18 18 C 1.47263 * 120.00189 * 184.92033 * 16 15 9 19 19 C 1.35209 * 123.14036 * 172.55591 * 18 16 15 20 20 S 1.70937 * 108.82754 * 180.02562 * 19 18 16 21 21 C 1.70764 * 91.12933 * 0.02562 * 20 19 18 22 22 N 1.28644 * 110.56169 * 359.97438 * 21 20 19 23 23 H 0.97006 * 120.00376 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.63302 * 54.56445 * 11 9 7 25 25 H 1.08993 * 109.46324 * 294.43268 * 11 9 7 26 26 H 1.08996 * 109.45635 * 178.49099 * 12 11 9 27 27 H 1.08996 * 109.45547 * 58.53395 * 12 11 9 28 28 H 1.08994 * 109.50347 * 301.41264 * 13 12 11 29 29 H 1.09004 * 109.49406 * 181.31328 * 13 12 11 30 30 H 1.09003 * 109.59139 * 185.57554 * 14 13 12 31 31 H 1.09000 * 109.59127 * 65.14563 * 14 13 12 32 32 H 1.08006 * 125.58702 * 0.06123 * 19 18 16 33 33 H 1.08006 * 124.72386 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0774 -1.1982 0.1238 9 6 1.2610 -2.4933 -0.1745 10 1 0.3386 -2.3175 -0.7279 11 6 2.1414 -3.4943 -0.9381 12 6 1.4338 -4.8503 -0.9908 13 6 1.2293 -5.3765 0.4316 14 6 0.3438 -4.3991 1.2110 15 7 0.9445 -3.0600 1.1435 16 6 1.1952 -2.3624 2.2692 17 8 1.6041 -1.2191 2.1977 18 6 0.9740 -2.9844 3.5856 19 6 1.3396 -2.4013 4.7494 20 16 0.9136 -3.4354 6.0421 21 6 0.2731 -4.5861 4.9551 22 7 0.3945 -4.1776 3.7413 23 1 -0.4851 0.8401 -0.0004 24 1 3.0988 -3.6031 -0.4285 25 1 2.3082 -3.1313 -1.9522 26 1 2.0433 -5.5562 -1.5550 27 1 0.4657 -4.7360 -1.4785 28 1 2.1952 -5.4676 0.9283 29 1 0.7463 -6.3529 0.3924 30 1 0.2760 -4.7172 2.2513 31 1 -0.6520 -4.3756 0.7683 32 1 1.8213 -1.4395 4.8464 33 1 -0.1719 -5.5262 5.2461 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259907865.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:05 Heat of formation + Delta-G solvation = 39.183404 kcal Electronic energy + Delta-G solvation = -18799.351870 eV Core-core repulsion = 15953.152654 eV Total energy + Delta-G solvation = -2846.199216 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.04259 -38.03553 -35.99130 -32.65203 -31.68020 -30.17430 -29.85988 -25.96592 -25.18816 -23.61534 -21.89639 -21.15980 -19.51880 -18.82631 -17.59596 -16.18537 -15.78460 -15.11648 -14.67088 -14.46138 -14.09574 -13.60674 -13.32097 -13.02790 -12.94047 -12.63160 -12.34475 -11.81892 -11.73966 -11.51954 -10.92515 -10.80872 -10.58615 -10.33358 -10.12463 -10.00755 -9.51681 -9.43182 -9.25252 -8.82864 -8.64313 -8.52480 -7.72796 -6.99852 -5.84955 -3.66210 0.86380 1.49424 1.84388 2.57855 3.44558 3.51190 3.57688 4.25705 4.49501 4.59102 4.67028 5.31015 5.52227 5.59661 5.65882 5.68937 5.75096 5.92837 6.09016 6.23791 6.31467 6.42253 6.63891 6.76441 6.90960 6.97560 7.06522 7.15732 7.67129 7.74661 8.06219 8.16006 8.32700 9.01485 9.16755 9.73735 9.82264 11.25740 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017753 B = 0.008845 C = 0.006321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.815116 B = 3164.714212 C = 4428.555244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.092 3.908 3 Si 0.896 3.104 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.476 4.476 8 H 0.053 0.947 9 C 0.256 3.744 10 H 0.056 0.944 11 C -0.120 4.120 12 C -0.121 4.121 13 C -0.124 4.124 14 C 0.046 3.954 15 N -0.580 5.580 16 C 0.576 3.424 17 O -0.476 6.476 18 C 0.023 3.977 19 C -0.233 4.233 20 S 0.166 5.834 21 C -0.014 4.014 22 N -0.429 5.429 23 H 0.257 0.743 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.149 0.851 31 H 0.042 0.958 32 H 0.185 0.815 33 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.147 -10.820 9.545 14.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.112 4.112 3 Si 0.725 3.275 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.515 4.515 8 H 0.072 0.928 9 C 0.158 3.842 10 H 0.074 0.926 11 C -0.159 4.159 12 C -0.159 4.159 13 C -0.162 4.162 14 C -0.079 4.079 15 N -0.313 5.313 16 C 0.356 3.644 17 O -0.348 6.348 18 C -0.111 4.111 19 C -0.374 4.374 20 S 0.419 5.581 21 C -0.311 4.311 22 N -0.145 5.145 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.165 0.835 31 H 0.060 0.940 32 H 0.202 0.798 33 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 0.116 -10.353 10.101 14.465 hybrid contribution 0.399 1.065 -0.811 1.397 sum 0.515 -9.289 9.290 13.147 Atomic orbital electron populations 1.69944 1.06188 1.26301 1.49773 1.24729 0.94424 0.98852 0.93187 0.86540 0.80169 0.83642 0.77123 1.21326 1.21691 1.20004 1.20755 0.93221 0.89572 1.47915 0.92848 1.19257 0.95147 0.90222 0.79570 0.92570 1.22046 0.99071 0.94325 1.00427 1.21607 1.00271 0.97713 0.96303 1.21810 1.00049 0.97962 0.96407 1.23074 0.94596 0.83889 1.06325 1.48806 1.59804 1.15514 1.07159 1.17281 0.80379 0.85583 0.81136 1.90957 1.43772 1.15610 1.84435 1.22130 1.00311 0.90528 0.98175 1.26513 1.08556 1.07015 0.95268 1.82620 1.52591 1.10711 1.12140 1.28760 1.05208 1.05348 0.91817 1.66762 1.15688 1.12618 1.19387 0.93371 0.93370 0.92239 0.93694 0.92646 0.92851 0.92704 0.83516 0.93964 0.79760 0.78458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.84 12.90 55.43 0.72 -26.12 16 2 C 0.09 2.70 3.89 -17.82 -0.07 2.63 16 3 Si 0.90 23.26 29.54 -169.99 -5.02 18.24 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 6 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 7 C -0.48 -13.67 5.70 -34.44 -0.20 -13.87 16 8 H 0.05 1.57 7.83 -52.49 -0.41 1.16 16 9 C 0.26 6.61 2.93 -68.53 -0.20 6.41 16 10 H 0.06 1.61 7.48 -51.93 -0.39 1.22 16 11 C -0.12 -2.58 5.38 -26.38 -0.14 -2.73 16 12 C -0.12 -2.18 5.88 -26.69 -0.16 -2.34 16 13 C -0.12 -2.14 6.08 -26.61 -0.16 -2.30 16 14 C 0.05 0.91 6.29 -3.71 -0.02 0.88 16 15 N -0.58 -13.91 2.97 -167.59 -0.50 -14.41 16 16 C 0.58 14.27 7.55 -12.59 -0.10 14.18 16 17 O -0.48 -13.48 12.52 5.25 0.07 -13.41 16 18 C 0.02 0.44 6.56 -84.53 -0.55 -0.11 16 19 C -0.23 -3.85 10.62 29.65 0.31 -3.53 16 20 S 0.17 1.88 22.96 -107.50 -2.47 -0.59 16 21 C -0.01 -0.16 12.17 51.43 0.63 0.46 16 22 N -0.43 -7.17 6.64 -12.36 -0.08 -7.25 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.15 2.73 3.45 -95.27 -0.33 2.40 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.19 3.03 8.04 -52.48 -0.42 2.61 16 33 H 0.20 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 282.05 15.07 4.25 4.25 Total: -1.00 -33.27 282.05 -7.76 -41.03 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -4.07 Total: -1.43 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -0.66 Total: -0.32 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.14 Total: -47.78 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.07 Total: -13.41 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.24 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.47 Total: -0.59 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.27 -7.76 -41.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259907865.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.215 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds